mRNA_E-fasciculatus_F_contig1572.3951.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1572.3951.1 vs. uniprot
Match: D8LC02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC02_ECTSI) HSP 1 Score: 183 bits (464), Expect = 3.190e-53 Identity = 98/102 (96.08%), Postives = 101/102 (99.02%), Query Frame = 1
Query: 259 MVDQDIIYGGLVAVAGLAVGAGMVALTERAGVRSEERGAVSYERKMKMQAMFMEDDVVETTDVDDVRYNMRKALRANQTEEELLALTADARKRAEEEADDGW 564
MV+QDIIYGGLVAVAGLAVGAGMVALTE+AGVRSEERGA+SYERKMKMQAMFMEDDVVE TDVDDVRYNMRKALRANQTEEELLALTADARKRAEEEADDGW
Sbjct: 1 MVEQDIIYGGLVAVAGLAVGAGMVALTEQAGVRSEERGALSYERKMKMQAMFMEDDVVEETDVDDVRYNMRKALRANQTEEELLALTADARKRAEEEADDGW 102
BLAST of mRNA_E-fasciculatus_F_contig1572.3951.1 vs. uniprot
Match: K0TE04_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TE04_THAOC) HSP 1 Score: 67.8 bits (164), Expect = 7.670e-10 Identity = 47/113 (41.59%), Postives = 67/113 (59.29%), Query Frame = 1
Query: 235 RHARSSLTMVDQDIIYGGLVAVAGLAVGAGMVALTERAGVRSEERGA-VSYERKMKMQAMFMEDDVVETT-DVDDVRYNMRKAL-RANQTEEELLALTADARKRAEEEADDGW 564
R RSSL+MVD +II GG +AV G+ G G+VA E G RS+ERG +S + ++ MED V++ D+ + + AL + E+E L L+ + +KR EEADDGW
Sbjct: 44 RRPRSSLSMVDTNIILGGGIAVGGVVAGIGLVAFAENMGERSKERGGGLSDDMATRITGGLMEDVEVDSVGDLSSLTDKLEAALMESGGAEQEQLQLSEEDKKRIAEEADDGW 156
BLAST of mRNA_E-fasciculatus_F_contig1572.3951.1 vs. uniprot
Match: A0A7S4ECZ2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4ECZ2_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 2.520e-9 Identity = 49/114 (42.98%), Postives = 63/114 (55.26%), Query Frame = 1
Query: 232 RRHARSS-LTMVDQDIIYGGLVAVAGLAVGAGMVALTERAGVRSEERG--AVSYERKMKMQAMFMEDDVVETTDVDDVRYNMRKALRANQTEEELLALTADARKRAEEEADDGW 564
RR A SS L M+D +I GG AV GLAVG GM +E+ + E+RG AVS + KM AMFMED+V+ T +DD M AL A + E A+ ++ DDGW
Sbjct: 44 RRQASSSQLQMLDAAVIQGGAAAVGGLAVGLGMAWFSEQQVEQGEQRGSDAVSEATRAKMSAMFMEDEVLPDTTLDDTVSRMEAALAAAKGE---AAVEEKVEEKPASSIDDGW 154
BLAST of mRNA_E-fasciculatus_F_contig1572.3951.1 vs. uniprot
Match: A0A1Z5KBT4_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KBT4_FISSO) HSP 1 Score: 63.9 bits (154), Expect = 1.150e-8 Identity = 43/110 (39.09%), Postives = 65/110 (59.09%), Query Frame = 1
Query: 247 SSLTMVDQDIIYGGLVAVAGLAVGAGMVALTERAGVRSEERGA-VSYERKMKMQAMFMEDDVVETTDVDDV---RYNMRKALRANQTEEELLALTADARKRAEEEADDGW 564
+SL MVDQ+++ G V V GLA G G+VA TE+ G R++ERG +S ++ +ED VE + VDD+ + ALR E ++ +A+++A E+ADDGW
Sbjct: 32 TSLQMVDQNVLLGAAVGVGGLAFGIGLVAFTEQQGERAKERGGGLSESMSTRIAGGLLED--VEVSSVDDLGSLTAQLENALRQTGKTGESFEVSEEAKRKALEDADDGW 139
BLAST of mRNA_E-fasciculatus_F_contig1572.3951.1 vs. uniprot
Match: B7FYG2_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FYG2_PHATC) HSP 1 Score: 60.1 bits (144), Expect = 3.140e-7 Identity = 42/114 (36.84%), Postives = 67/114 (58.77%), Query Frame = 1
Query: 241 ARSSLTM---VDQDIIYGGLVAVAGLAVGAGMVALTERAGVRSEERGA-VSYERKMKMQAMFMED-DVVETTDVDDVRYNMRKALR-ANQTEEELLALTADARKRAEEEADDGW 564
AR SL + +DQ ++ G + VAGLA G G+VA TE G R++ERG +S ++ +ED +V D+ + + KALR + ++E+ +T + +KR ++EADDGW
Sbjct: 36 ARPSLALNLELDQQVLQGIGIGVAGLAAGVGLVAFTEAQGERAKERGGGLSEGMSTRITGGLLEDVEVSSVEDLGSLTSQLEKALRESGGAKDEVFEMTEEEKKRIQDEADDGW 149 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1572.3951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1572.3951.1 >prot_E-fasciculatus_F_contig1572.3951.1 ID=prot_E-fasciculatus_F_contig1572.3951.1|Name=mRNA_E-fasciculatus_F_contig1572.3951.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=159bp MRSIGALLFFLPFTSAFLAPTASLLRSSGRATSPFVGGVQASSQQQQRRHback to top mRNA from alignment at E-fasciculatus_F_contig1572:13158..17110+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1572.3951.1 ID=mRNA_E-fasciculatus_F_contig1572.3951.1|Name=mRNA_E-fasciculatus_F_contig1572.3951.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3953bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1572:13158..17110+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1572:13158..17110+ >mRNA_E-fasciculatus_F_contig1572.3951.1 ID=mRNA_E-fasciculatus_F_contig1572.3951.1|Name=mRNA_E-fasciculatus_F_contig1572.3951.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=954bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1572:13158..17110+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |