mRNA_E-fasciculatus_F_contig15675.3931.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15675.3931.1
Unique NamemRNA_E-fasciculatus_F_contig15675.3931.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15675.3931.1 vs. uniprot
Match: A0A835ZFY4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFY4_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.920e-12
Identity = 48/133 (36.09%), Postives = 68/133 (51.13%), Query Frame = 1 
Query:   13 VYIASLPSRGTLHGVDGYVIDHVPHFVPYDGGYPVRYRPENDEFSGPLDLYTSFSYNAVDGVTGETSVVPGVVEIHVLPKNDPPVPGNFSARIQTG-ETLIVLSGTDVDSAGGDAIVGFLVVELPRHGVLYQV 408
            +++ASLPSRGTL+ + G  +      +       +RYRP  D+FS     Y +F Y A DGVTG  S     V I V  ++DPPV    +  +     T I  +GTDVD+  GD++  + +   P  G LY V
Sbjct:  385 LWLASLPSRGTLYTLAGAAVTSAATQI---ANATLRYRPARDQFSAGGAAYATFRYVAADGVTGARSAE-ATVTIFVTAQDDPPVVVARAVTVAAAVATKICGNGTDVDA--GDSVRNYYISTAPSSGKLYYV 511
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15675.3931.1 vs. uniprot
Match: A0A7S2S457_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S457_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 3.500e-10
Identity = 48/132 (36.36%), Postives = 66/132 (50.00%), Query Frame = 1 
Query:   19 IASLPSRGTLH-GVDGYVIDHVPHFVP-YDGGYPVRYRPENDEFSGPLDLYTSFSYNAVDGVTGETSVVPGVVEIHVLPKNDPPVPGNFSA-RIQTGETLIVLSGTDVDSAGGDAIVGFLVVELPRHGVLYQ 405
            + +LP +GTL+    G  +      +P  +G Y +RYRP  D     LD   +FSY A+DGVTG  S     V + V P NDPP   N S     +  T +  + +DVD +   AI    +  LPR+GVL Q
Sbjct:    9 LQTLPLQGTLYIPATGAAVTAAGTEIPEVNGTYALRYRPPKDASGLALD---TFSYYAMDGVTGVRSAQTRTVTLDVRPCNDPPRAFNVSLWAFSSTRTTVEFNTSDVDDS---AIAAAYITRLPRNGVLLQ 134
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15675.3931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835ZFY4_9STRA2.920e-1236.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2S457_9STRA3.500e-1036.36Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15675contigE-fasciculatus_F_contig15675:2126..2536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size411
Cds size411
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928040.5492787-CDS-E-fasciculatus_F_contig15675:2125..25361622928040.5492787-CDS-E-fasciculatus_F_contig15675:2125..2536Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15675 2126..2536 +
1695995799.759205-CDS-E-fasciculatus_F_contig15675:2125..25361695995799.759205-CDS-E-fasciculatus_F_contig15675:2125..2536Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15675 2126..2536 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15675.3931.1prot_E-fasciculatus_F_contig15675.3931.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15675 2126..2536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15675.3931.1

>prot_E-fasciculatus_F_contig15675.3931.1 ID=prot_E-fasciculatus_F_contig15675.3931.1|Name=mRNA_E-fasciculatus_F_contig15675.3931.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=137bp
MLSDVYIASLPSRGTLHGVDGYVIDHVPHFVPYDGGYPVRYRPENDEFSG
PLDLYTSFSYNAVDGVTGETSVVPGVVEIHVLPKNDPPVPGNFSARIQTG
ETLIVLSGTDVDSAGGDAIVGFLVVELPRHGVLYQVS
back to top

mRNA from alignment at E-fasciculatus_F_contig15675:2126..2536+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15675.3931.1 ID=mRNA_E-fasciculatus_F_contig15675.3931.1|Name=mRNA_E-fasciculatus_F_contig15675.3931.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=411bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15675:2126..2536+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTATCTGATGTTTATATTGCCAGCCTACCATCAAGGGGCACACTCCA
CGGCGTCGATGGGTACGTCATCGACCACGTCCCCCACTTCGTCCCTTATG
ATGGCGGGTATCCTGTAAGATACCGCCCTGAAAACGACGAGTTTTCCGGG
CCTTTAGATCTGTACACCTCGTTTTCTTACAACGCTGTGGACGGGGTTAC
AGGAGAAACAAGCGTCGTCCCTGGAGTCGTCGAAATCCATGTTCTACCGA
AAAACGACCCACCTGTGCCAGGCAATTTTTCTGCAAGAATCCAGACGGGG
GAAACGTTGATAGTTCTGAGTGGAACGGACGTGGATAGCGCTGGTGGCGA
TGCCATTGTGGGTTTCCTTGTCGTGGAGCTACCAAGGCATGGAGTATTGT
ACCAGGTGAGC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15675:2126..2536+

>mRNA_E-fasciculatus_F_contig15675.3931.1 ID=mRNA_E-fasciculatus_F_contig15675.3931.1|Name=mRNA_E-fasciculatus_F_contig15675.3931.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=822bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15675:2126..2536+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTATCTGATGTTTATATTGCCAGCCTACCATCAAGGGGCACACTCCA
CGGCGTCGATGGGTACGTCATCGACCACGTCCCCCACTTCGTCCCTTATG
ATGGCGGGTATCCTGTAAGATACCGCCCTGAAAACGACGAGTTTTCCGGG
CCTTTAGATCTGTACACCTCGTTTTCTTACAACGCTGTGGACGGGGTTAC
AGGAGAAACAAGCGTCGTCCCTGGAGTCGTCGAAATCCATGTTCTACCGA
AAAACGACCCACCTGTGCCAGGCAATTTTTCTGCAAGAATCCAGACGGGG
GAAACGTTGATAGTTCTGAGTGGAACGGACGTGGATAGCGCTGGTGGCGA
TGCCATTGTGGGTTTCCTTGTCGTGGAGCTACCAAGGCATGGAGTATTGT
ACCAGGTGAGCATGCTATCTGATGTTTATATTGCCAGCCTACCATCAAGG
GGCACACTCCACGGCGTCGATGGGTACGTCATCGACCACGTCCCCCACTT
CGTCCCTTATGATGGCGGGTATCCTGTAAGATACCGCCCTGAAAACGACG
AGTTTTCCGGGCCTTTAGATCTGTACACCTCGTTTTCTTACAACGCTGTG
GACGGGGTTACAGGAGAAACAAGCGTCGTCCCTGGAGTCGTCGAAATCCA
TGTTCTACCGAAAAACGACCCACCTGTGCCAGGCAATTTTTCTGCAAGAA
TCCAGACGGGGGAAACGTTGATAGTTCTGAGTGGAACGGACGTGGATAGC
GCTGGTGGCGATGCCATTGTGGGTTTCCTTGTCGTGGAGCTACCAAGGCA
TGGAGTATTGTACCAGGTGAGC
back to top