mRNA_E-fasciculatus_F_contig15660.3926.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15660.3926.1
Unique NamemRNA_E-fasciculatus_F_contig15660.3926.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15660.3926.1 vs. uniprot
Match: A0A6H5KMV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMV2_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 4.020e-37
Identity = 90/167 (53.89%), Postives = 105/167 (62.87%), Query Frame = -3 
Query:   26 LTAVVVVRIQLVTQKVALPVAIAERSLPPAARTPPAATWVFAWWYRLGRCRTSIRQPLCCCCYRRCGV*YAWTHHAERGRIALLAAEGAAAAVADSAQRTRESTVRVEAENSIREGGKFHRAGGHTAAASCVCVFLQAEYL*HTAGE*LGAPRCT*RHLLKLQSAKS 526
            +  VVVVR++ VTQK ALPVA AE SL PA RT  A TW+F WW+R G C T+ RQ   C  YR C V Y WT+ AE+  IALL A GAAA    SAQ+TR+STVRVE ENS R GG F   GGHTAA+SCVC    A  +   +       +    HL KLQSAK+
Sbjct:    1 MLTVVVVRVEPVTQKYALPVATAENSLLPA-RTLRAVTWIFVWWHRPGWC-TNTRQRRHCG-YRCCDVLYVWTYDAEKEHIALLVARGAAAG---SAQQTRKSTVRVEVENSTRVGGTFRPEGGHTAASSCVCFSGTAAVVAIASSWGRRGRKMRRCHLFKLQSAKT 161
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BLAST of mRNA_E-fasciculatus_F_contig15660.3926.1 vs. uniprot
Match: A0A6H5KP85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP85_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 3.450e-28
Identity = 68/81 (83.95%), Postives = 70/81 (86.42%), Query Frame = 1 
Query:  640 ATSVGSNS-----VVGGTVAKPAEMTTSPDEDPTAAAHGFLAEFLDMSEEELRQLSAKYQSLPPGRRGPDEITVAGPELAA 867
            ATS GS+S     VVGGTVA+ AE T SP EDPTAAAHGFL EFLDMSEEELRQLSAKYQSLPPGRRGPDEITVAGPELAA
Sbjct:    2 ATSAGSSSSTSISVVGGTVAERAE-TNSPYEDPTAAAHGFLTEFLDMSEEELRQLSAKYQSLPPGRRGPDEITVAGPELAA 81
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BLAST of mRNA_E-fasciculatus_F_contig15660.3926.1 vs. uniprot
Match: D7G2F0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F0_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 4.070e-10
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:  763 MSEEELRQLSAKYQSLPPGRRGPDEITVAGPELAA 867
            MSEEELRQLSAKYQSLPPGRRGPDEITVAGPELAA
Sbjct:    1 MSEEELRQLSAKYQSLPPGRRGPDEITVAGPELAA 35
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15660.3926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KMV2_9PHAE4.020e-3753.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP85_9PHAE3.450e-2883.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2F0_ECTSI4.070e-10100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15660contigE-fasciculatus_F_contig15660:17..1703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.2
Seed ortholog evalue8.5e-10
Seed eggNOG ortholog2880.D7G2F0
KEGG koko:K15031,ko:K15032
EggNOG free text desc.termination of mitochondrial transcription
EggNOG OGsKOG1267@1,KOG1267@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionMitochodrial transcription termination factor
Ec32 orthologEc-24_001740.1
Exons2
Model size986
Cds size846
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15660.3926.1prot_E-fasciculatus_F_contig15660.3926.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15660 17..1565 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928039.6776762-CDS-E-fasciculatus_F_contig15660:16..2261622928039.6776762-CDS-E-fasciculatus_F_contig15660:16..226Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15660 17..226 -
1695995799.367874-CDS-E-fasciculatus_F_contig15660:16..2261695995799.367874-CDS-E-fasciculatus_F_contig15660:16..226Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15660 17..226 -
1622928039.6883574-CDS-E-fasciculatus_F_contig15660:929..15651622928039.6883574-CDS-E-fasciculatus_F_contig15660:929..1565Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15660 930..1565 -
1695995799.3802385-CDS-E-fasciculatus_F_contig15660:929..15651695995799.3802385-CDS-E-fasciculatus_F_contig15660:929..1565Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15660 930..1565 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928039.7011912-UTR-E-fasciculatus_F_contig15660:1565..17031622928039.7011912-UTR-E-fasciculatus_F_contig15660:1565..1703Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15660 1566..1703 -
1695995799.3945773-UTR-E-fasciculatus_F_contig15660:1565..17031695995799.3945773-UTR-E-fasciculatus_F_contig15660:1565..1703Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15660 1566..1703 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15660.3926.1

>prot_E-fasciculatus_F_contig15660.3926.1 ID=prot_E-fasciculatus_F_contig15660.3926.1|Name=mRNA_E-fasciculatus_F_contig15660.3926.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=282bp
MRPLCVLLLGGTYHPRVSSFLPPPAPSIPSSVVLNPPQQQQHPLRREARC
APSPRGASRRIRHRSGGSSSSTAAAGCWCGNAQGDTTRRKPTSPPAAFGR
RAVASVPRLRRAVRPSASQVEYAPLPPQSVACSAAAGDIIIQRASSRSSS
SSRRRRTSSSSSTIGATATSVGSNSVVGGTVAKPAEMTTSPDEDPTAAAH
GFLAEFLDMSEEELRQLSAKYQSLPPGRRGPDEITVAGPELAAAAAKAAE
EAAAAVIVASAGPPSLASGRGGEQRSAHGVGA
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mRNA from alignment at E-fasciculatus_F_contig15660:17..1703-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15660.3926.1 ID=mRNA_E-fasciculatus_F_contig15660.3926.1|Name=mRNA_E-fasciculatus_F_contig15660.3926.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1687bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15660:17..1703- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGTACGCTGGTACGTCACACCGAGGGACTTCGCAGACTGTAATTTAAGG
AGATGTCTTTACGTACAGCGTGGGGCACCCAGCTACTCGCCCGCGGTGTG
CTACAAGTATTCTGCTTGGAGAAACACACACACACACGATGCGGCCGCTG
TGTGTCCTCCTGCTCGGTGGAACTTACCACCCTCGCGTATCGAGTTTTCT
GCCTCCACCCGCACCGTCGATTCCCTCGTCCGTTGTGCTGAATCCGCCAC
AGCAGCAGCAGCACCCTCTGCGGCGAGAAGCGCGATGCGCCCCCTCTCCG
CGTGGTGCGTCCAGGCGTATCAGACACCGCAGCGGCGGTAGCAGCAGCAG
CACAGCGGCTGCCGGATGCTGGTGCGGCAACGCCCAAGGCGATACCACCA
GGCGAAAACCCACGTCGCCGCCGGCGGCGTTCGGGCGGCGGGCGGTAGCG
AGCGTTCCGCGATTGCGACGGGCAGTGCGACCTTCTGCGTCACAAGTTGA
ATACGCACCACTACCACCGCAGTCAGTAGCATGTTCTGCGGCGGCTGGCG
ATATCATCATCCAGCGCGCCAGCAGTCGCAGCAGCAGCAGCAGCAGAAGA
AGAAGAACCAGCAGCAGTAGCAGCACCATCGGAGCGACAGCCACCAGTGT
CGGCAGCAATTCGGTGGTTGGCGGGACTGTTGCGAAGCCGGCGGAGATGA
CGACTAGCCCGGACGAGGATCCCACAGCGGCGGCGCATGGTTTCCTTGCC
GAGTTCCTGGACATGAGCGAGGAGGTGGGTGGGGGGCATGATGCCGCAGC
AACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGTGG
CACTGCTTTGCTGTGAATCGTTTGTTGGATTGTGTGCTGCATGATGTTGG
ACAGAGCATGTCCTTACTGCCTTCAGCAGTCGTCCCAACTACGTGTCTGT
TGGGACAGATAGCATACGTCGTGTGCGTGTGCGTACAGCAGTAGAGCAAC
AACGCCATGACGTGCCGACGAGCGTCTACAAACCATACAGTTACCCACAA
CGCTGCAATGCTTGTTTGCGTCTACGCAACCTGTTGTTATCCAATACATG
AGTCCGAACATGGGTATTGCCGCATCATTGTTTGCTGCCACGATTCGGTC
CGACTACACAGGCAGTACCGAGCAGTTACCTTTGAGATTTCCTGAGCCCA
AAGCCTTCCCAAACCTAGCGATCATAGCTGCGACGTCTGTTGTGAGTCAC
CGCAGGACGGAACGGCTGCGAAACATGTTCCGTGAGCTTTGGCAGCCCTT
TGTTTCCTGCTGTCTTATCGCTCGCCGGTGCGTTGCCGCTCTGGTGGCTG
CACGGCAAGTCGATTCAATCACACACCGCACAGACACATGCGGCCCGTTT
CCGCGGAACAGCAGCGTGAGACGATCTTGGGACACCCTCCCCCCAACCTC
CCCCCCCTTACCGCCTCGCCTGACCAGGAACTCCGGCAGCTGTCAGCCAA
GTACCAGTCGTTACCCCCCGGCCGAAGAGGGCCCGACGAGATCACGGTAG
CCGGGCCGGAGCTCGCCGCCGCCGCCGCGAAGGCCGCCGAGGAGGCAGCA
GCCGCAGTTATCGTCGCATCTGCGGGGCCCCCTTCGCTTGCTTCCGGCCG
CGGGGGGGAGCAACGCTCCGCCCACGGAGTTGGGGCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15660:17..1703-

>mRNA_E-fasciculatus_F_contig15660.3926.1 ID=mRNA_E-fasciculatus_F_contig15660.3926.1|Name=mRNA_E-fasciculatus_F_contig15660.3926.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1692bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15660:17..1703- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGGCCGCTGTGTGTCCTCCTGCTCGGTGGAACTTACCACCCTCGCGT
ATCGAGTTTTCTGCCTCCACCCGCACCGTCGATTCCCTCGTCCGTTGTGC
TGAATCCGCCACAGCAGCAGCAGCACCCTCTGCGGCGAGAAGCGCGATGC
GCCCCCTCTCCGCGTGGTGCGTCCAGGCGTATCAGACACCGCAGCGGCGG
TAGCAGCAGCAGCACAGCGGCTGCCGGATGCTGGTGCGGCAACGCCCAAG
GCGATACCACCAGGCGAAAACCCACGTCGCCGCCGGCGGCGTTCGGGCGG
CGGGCGGTAGCGAGCGTTCCGCGATTGCGACGGGCAGTGCGACCTTCTGC
GTCACAAGTTGAATACGCACCACTACCACCGCAGTCAGTAGCATGTTCTG
CGGCGGCTGGCGATATCATCATCCAGCGCGCCAGCAGTCGCAGCAGCAGC
AGCAGCAGAAGAAGAAGAACCAGCAGCAGTAGCAGCACCATCGGAGCGAC
AGCCACCAGTGTCGGCAGCAATTCGGTGGTTGGCGGGACTGTTGCGAAGC
CGGCGGAGATGACGACTAGCCCGGACGAGGATCCCACAGCGGCGGCGCAT
GGTTTCCTTGCCGAGTTCCTGGACATGAGCGAGGAGATGCGGCCGCTGTG
TGTCCTCCTGCTCGGTGGAACTTACCACCCTCGCGTATCGAGTTTTCTGC
CTCCACCCGCACCGTCGATTCCCTCGTCCGTTGTGCTGAATCCGCCACAG
CAGCAGCAGCACCCTCTGCGGCGAGAAGCGCGATGCGCCCCCTCTCCGCG
TGGTGCGTCCAGGCGTATCAGACACCGCAGCGGCGGTAGCAGCAGCAGCA
CAGCGGCTGCCGGATGCTGGTGCGGCAACGCCCAAGGCGATACCACCAGG
CGAAAACCCACGTCGCCGCCGGCGGCGTTCGGGCGGCGGGCGGTAGCGAG
CGTTCCGCGATTGCGACGGGCAGTGCGACCTTCTGCGTCACAAGTTGAAT
ACGCACCACTACCACCGCAGTCAGTAGCATGTTCTGCGGCGGCTGGCGAT
ATCATCATCCAGCGCGCCAGCAGTCGCAGCAGCAGCAGCAGCAGAAGAAG
AAGAACCAGCAGCAGTAGCAGCACCATCGGAGCGACAGCCACCAGTGTCG
GCAGCAATTCGGTGGTTGGCGGGACTGTTGCGAAGCCGGCGGAGATGACG
ACTAGCCCGGACGAGGATCCCACAGCGGCGGCGCATGGTTTCCTTGCCGA
GTTCCTGGACATGAGCGAGGAGGAACTCCGGCAGCTGTCAGCCAAGTACC
AGTCGTTACCCCCCGGCCGAAGAGGGCCCGACGAGATCACGGTAGCCGGG
CCGGAGCTCGCCGCCGCCGCCGCGAAGGCCGCCGAGGAGGCAGCAGCCGC
AGTTATCGTCGCATCTGCGGGGCCCCCTTCGCTTGCTTCCGGCCGCGGGG
GGGAGCAACGCTCCGCCCACGGAGTTGGGGCGGAACTCCGGCAGCTGTCA
GCCAAGTACCAGTCGTTACCCCCCGGCCGAAGAGGGCCCGACGAGATCAC
GGTAGCCGGGCCGGAGCTCGCCGCCGCCGCCGCGAAGGCCGCCGAGGAGG
CAGCAGCCGCAGTTATCGTCGCATCTGCGGGGCCCCCTTCGCTTGCTTCC
GGCCGCGGGGGGGAGCAACGCTCCGCCCACGGAGTTGGGGCG
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