mRNA_E-fasciculatus_F_contig10490.391.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10490.391.1
Unique NamemRNA_E-fasciculatus_F_contig10490.391.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10490.391.1 vs. uniprot
Match: D8LN70_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN70_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 4.920e-33
Identity = 107/151 (70.86%), Postives = 108/151 (71.52%), Query Frame = 1 
Query:    1 GRLRDGGASSSSSASVAMMMGSLSIGGDQSAADQRYGGRGDLGRGXXXXXGQPEDGVVFADDYDLVGPPDGXXXXXFGFLDTPXXSNYEPRHDDRAPLQXXXXXXXXXXXXXXXXXPPTPLLPRRGVGGSPSLAPQRRRLPHDVGGFPASG 453
            GRL   GASS   ASVAMMMGSLSI GDQSAA QRYG   +LGRG     GQPEDGV FADDYDLVGPPDGXXXXX  FLD  XX              XXXXXXXXXXXXX    P TPL PRRGVGGSPSL PQ RRLPHDVGGFPASG
Sbjct:  505 GRLGGQGASSXXXASVAMMMGSLSIAGDQSAAGQRYGAGNELGRGGGGG-GQPEDGVNFADDYDLVGPPDGXXXXXXXFLDXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXQSTAPRTPLHPRRGVGGSPSLTPQPRRLPHDVGGFPASG 653
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BLAST of mRNA_E-fasciculatus_F_contig10490.391.1 vs. uniprot
Match: A0A6H5KNA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNA0_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 2.890e-20
Identity = 63/78 (80.77%), Postives = 64/78 (82.05%), Query Frame = 1 
Query:  229 FGFLDTPXXSNYEPRHDDRAPLQXXXXXXXXXXXXXXXXX---PPTPLLPRRGVGGSPSLAPQRRRLPHDVGGFPASG 453
            FGFLDTP  SNYEP HDDRAPLQ    XXXXXXXXXXXXX   P  P+LPRRGVGGSPSL PQRRRLPHDVGGFP SG
Sbjct:  583 FGFLDTPPPSNYEPGHDDRAPLQQQQHXXXXXXXXXXXXXXXAPLAPILPRRGVGGSPSLTPQRRRLPHDVGGFPVSG 660
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10490.391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN70_ECTSI4.920e-3370.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNA0_9PHAE2.890e-2080.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10490contigE-fasciculatus_F_contig10490:1385..1838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size455
Cds size453
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927546.2209601-CDS-E-fasciculatus_F_contig10490:1384..18371622927546.2209601-CDS-E-fasciculatus_F_contig10490:1384..1837Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10490 1385..1837 +
1695995588.8198776-CDS-E-fasciculatus_F_contig10490:1384..18371695995588.8198776-CDS-E-fasciculatus_F_contig10490:1384..1837Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10490 1385..1837 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10490.391.1prot_E-fasciculatus_F_contig10490.391.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10490 1385..1837 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10490.391.1

>prot_E-fasciculatus_F_contig10490.391.1 ID=prot_E-fasciculatus_F_contig10490.391.1|Name=mRNA_E-fasciculatus_F_contig10490.391.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=151bp
GRLRDGGASSSSSASVAMMMGSLSIGGDQSAADQRYGGRGDLGRGGRGGR
GQPEDGVVFADDYDLVGPPDGGGGGSFGFLDTPPPSNYEPRHDDRAPLQP
QQQPQQQEEERQQSTAPPTPLLPRRGVGGSPSLAPQRRRLPHDVGGFPAS
G
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mRNA from alignment at E-fasciculatus_F_contig10490:1385..1838+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10490.391.1 ID=mRNA_E-fasciculatus_F_contig10490.391.1|Name=mRNA_E-fasciculatus_F_contig10490.391.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=454bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10490:1385..1838+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTAGGCTGAGGGACGGGGGTGCGTCCTCCTCGTCGTCTGCTAGCGTCGC
GATGATGATGGGGTCGTTGTCGATCGGAGGGGACCAGTCGGCGGCGGACC
AGCGGTACGGGGGGAGGGGCGACCTGGGTCGCGGTGGCCGCGGCGGCCGA
GGACAGCCCGAGGACGGCGTTGTCTTCGCTGACGACTACGATCTCGTCGG
CCCACCCGACGGGGGTGGTGGCGGCAGCTTCGGCTTTCTGGATACCCCTC
CTCCCTCCAACTACGAGCCCCGACATGACGACCGCGCGCCGCTGCAGCCG
CAGCAGCAGCCTCAGCAGCAGGAGGAGGAGCGACAGCAGTCGACGGCTCC
TCCTACTCCTCTTCTCCCCCGGCGAGGAGTGGGCGGATCGCCGTCTCTTG
CCCCGCAACGGAGACGCCTCCCGCACGACGTCGGGGGCTTTCCGGCGAGC
GGCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10490:1385..1838+

>mRNA_E-fasciculatus_F_contig10490.391.1 ID=mRNA_E-fasciculatus_F_contig10490.391.1|Name=mRNA_E-fasciculatus_F_contig10490.391.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=906bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10490:1385..1838+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTAGGCTGAGGGACGGGGGTGCGTCCTCCTCGTCGTCTGCTAGCGTCGC
GATGATGATGGGGTCGTTGTCGATCGGAGGGGACCAGTCGGCGGCGGACC
AGCGGTACGGGGGGAGGGGCGACCTGGGTCGCGGTGGCCGCGGCGGCCGA
GGACAGCCCGAGGACGGCGTTGTCTTCGCTGACGACTACGATCTCGTCGG
CCCACCCGACGGGGGTGGTGGCGGCAGCTTCGGCTTTCTGGATACCCCTC
CTCCCTCCAACTACGAGCCCCGACATGACGACCGCGCGCCGCTGCAGCCG
CAGCAGCAGCCTCAGCAGCAGGAGGAGGAGCGACAGCAGTCGACGGCTCC
TCCTACTCCTCTTCTCCCCCGGCGAGGAGTGGGCGGATCGCCGTCTCTTG
CCCCGCAACGGAGACGCCTCCCGCACGACGTCGGGGGCTTTCCGGCGAGC
GGCGGTAGGCTGAGGGACGGGGGTGCGTCCTCCTCGTCGTCTGCTAGCGT
CGCGATGATGATGGGGTCGTTGTCGATCGGAGGGGACCAGTCGGCGGCGG
ACCAGCGGTACGGGGGGAGGGGCGACCTGGGTCGCGGTGGCCGCGGCGGC
CGAGGACAGCCCGAGGACGGCGTTGTCTTCGCTGACGACTACGATCTCGT
CGGCCCACCCGACGGGGGTGGTGGCGGCAGCTTCGGCTTTCTGGATACCC
CTCCTCCCTCCAACTACGAGCCCCGACATGACGACCGCGCGCCGCTGCAG
CCGCAGCAGCAGCCTCAGCAGCAGGAGGAGGAGCGACAGCAGTCGACGGC
TCCTCCTACTCCTCTTCTCCCCCGGCGAGGAGTGGGCGGATCGCCGTCTC
TTGCCCCGCAACGGAGACGCCTCCCGCACGACGTCGGGGGCTTTCCGGCG
AGCGGC
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