mRNA_E-fasciculatus_F_contig15632.3908.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15632.3908.1
Unique NamemRNA_E-fasciculatus_F_contig15632.3908.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig15632.3908.1 vs. uniprot
Match: D7FRT2_ECTSI (EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRT2_ECTSI)

HSP 1 Score: 295 bits (756), Expect = 6.540e-93
Identity = 157/224 (70.09%), Postives = 169/224 (75.45%), Query Frame = 1
Query:    1 GSRDPSEVDGVDSAITGVHVQGMVLKNAGKECLRMRYFATNCVVQVNEIGPCGIEDFQQGSDGSNGEGVYIGTALNQIDEKNGDDVVDECTGNVVMNNEIDTQACIPYLPGSEGVDIKEGSYGNVVYGNTISGQMDEETGGISLRGDANIVVDNNVIEGAGTCIRIGGFEEDGVQYGEDNEVYENTLDRCQNSAIKVNESPQLICDNTIDISENPNDDDLVRGE 672
            GSRDPSEVDGVDS+ITGV+VQGMVLKNAGKECLR+RYFATNCVVQVNEIGPCGI+DFQQ SDGSNGEGVYIGTALNQIDEKNGDDVVDECTG VVMNNEIDTQ       GSEGVDIKE                                       G+GTCIR+GGFEEDGVQYGEDNEVYENTLD C NSA+KVNESPQLICDNT+ ++ +P DD+L  GE
Sbjct:  153 GSRDPSEVDGVDSSITGVNVQGMVLKNAGKECLRIRYFATNCVVQVNEIGPCGIQDFQQDSDGSNGEGVYIGTALNQIDEKNGDDVVDECTGIVVMNNEIDTQ-------GSEGVDIKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGTCIRVGGFEEDGVQYGEDNEVYENTLDGCLNSAVKVNESPQLICDNTVILAADPTDDELRGGE 369          
BLAST of mRNA_E-fasciculatus_F_contig15632.3908.1 vs. uniprot
Match: A0A0G0AZ49_9BACT (Secreted protein n=1 Tax=Parcubacteria group bacterium GW2011_GWC2_32_10 TaxID=1618918 RepID=A0A0G0AZ49_9BACT)

HSP 1 Score: 150 bits (380), Expect = 6.430e-39
Identity = 88/198 (44.44%), Postives = 118/198 (59.60%), Query Frame = 1
Query:   37 SAITGVHVQGMVLKNAGKECLRMRYFATNCVVQVNEIGPCGIEDFQQGSDGSNGEGVYIGTALNQIDEKNGDDVVDECTGNVVMNNEIDTQACIPYLPGSEGVDIKEGSYGNVVYGNTISGQMDEETGGISLRGDANIVVDNNVIEGAGTCIRIGGFEEDGVQYGEDNEVYENTLDRCQNSAIKVNESPQ-LICDNTI 627
            + +TG+ +  M +KN+G EC+R++YFA N  +  N I  CGI DF+  + G NGEG+YIGTA  Q+  KN    +D+   N + NN I T        G+EGVDIKEGS GN+V  N I GQ D E+GG+  RGD+NI   N+V E  G  IR GG    GVQYG++N  Y N +   +  A K+  +PQ  IC N +
Sbjct:  166 NGVTGLKITDMNIKNSGGECIRLKYFAQNNEIANNVIQNCGIYDFKFSAGGKNGEGIYIGTAPEQL-SKNPTLDIDKSNNNYIHNNSIQTN-------GNEGVDIKEGSTGNIVEYNIIRGQKDSESGGLDSRGDSNIFRYNDVAESLGAGIRFGGDNYKGVQYGKNNIAYGNKITNNKFGAFKIQATPQGNICGNIL 355          
BLAST of mRNA_E-fasciculatus_F_contig15632.3908.1 vs. uniprot
Match: A0A1G2MDL9_9BACT (F5/8 type C domain-containing protein n=1 Tax=Candidatus Taylorbacteria bacterium RIFCSPHIGHO2_02_49_25 TaxID=1802305 RepID=A0A1G2MDL9_9BACT)

HSP 1 Score: 149 bits (375), Expect = 2.250e-38
Identity = 88/189 (46.56%), Postives = 115/189 (60.85%), Query Frame = 1
Query:   67 MVLKNAGKECLRMRYFATNCVVQVNEIGPCGIEDFQQGSDGSNGEGVYIGTALNQI-DEKNGDDVVDECTGNVVMNNEIDTQACIPYLPGSEGVDIKEGSYGNVVYGNTISGQMDEETGGISLRGDANIVVDNNVIEGAGTCIRIGGFEEDGVQYGEDNEVYENTLDRCQNSAIKVNESPQ-LICDNTI 627
            M LKN+G ECLR+RYFAT   +  N I  CG  DF   + G NGEG+YIGT+  Q  D KN  +  DE   N+V +N IDTQ       G+E +DIKEG+  N++  NT  GQ D E+GG   RGD NI   N+V    G  IR+GG   +G+QYG++N+VYENT+   +N  I+   +PQ  IC NT+
Sbjct:    1 MTLKNSGGECLRLRYFATKSEIAYNTIANCGAYDFLFNAGGKNGEGIYIGTSNKQWGDGKNPTNDPDETKDNLVHHNYIDTQ-------GNECIDIKEGATANIIEYNTCRGQKDSESGGFDSRGDGNIFRYNDVRGSVGGGIRLGGASVNGIQYGKNNDVYENTIVDNKNGGIRFQTTPQGKICGNTM 182          
BLAST of mRNA_E-fasciculatus_F_contig15632.3908.1 vs. uniprot
Match: A0A0G1XWI5_9BACT (Beta_helix domain-containing protein n=3 Tax=Candidatus Moranbacteria TaxID=1752737 RepID=A0A0G1XWI5_9BACT)

HSP 1 Score: 145 bits (365), Expect = 5.360e-38
Identity = 93/202 (46.04%), Postives = 116/202 (57.43%), Query Frame = 1
Query:   28 GVDSAITGVHVQGMVLKNAGKECLRMRYFATNCVVQVNEIGPCGIEDFQQGSDGSNGEGVYIGTALNQIDE-KNGDDVVDECTGNVVMNNEIDTQACIPYLPGSEGVDIKEGSYGNVVYGNTISGQMDEETGGISLRGDANIVVDNNVIEGAGTCIRIGGFEEDGVQYGEDNEVYENTLDRCQNSAIKVNESPQ-LICDNTI 627
            G    +TG+ V  M LKNAG EC+R+RYFA    +  N I  CG  DF     G NGEG+YIGTA  Q D+ KN  D  D   GN V  N IDTQ       G+E VD+KEGS GN+V  N  +GQ D E+GG+  RG+ NI  +N V   AG  IR+GG E+D    G++N+VY NT+   +   IKV   PQ  IC N +
Sbjct:  173 GDGKGVTGLKVLKMSLKNAGGECVRLRYFAQKNEIADNTITGCGAYDFLLDGKGKNGEGIYIGTAPEQTDDGKNPTDERDHSNGNWVHGNTIDTQ-------GNECVDVKEGSSGNLVENNVCTGQKDSESGGLDSRGNGNIFRNNLVYGNAGAGIRLGGDEDDD---GKNNDVYLNTIRDNEGVGIKVQRYPQGKICGNVL 364          
BLAST of mRNA_E-fasciculatus_F_contig15632.3908.1 vs. uniprot
Match: A0A0G0APH1_9BACT (Beta_helix domain-containing protein n=2 Tax=Candidatus Moranbacteria TaxID=1752737 RepID=A0A0G0APH1_9BACT)

HSP 1 Score: 144 bits (364), Expect = 1.140e-37
Identity = 86/199 (43.22%), Postives = 118/199 (59.30%), Query Frame = 1
Query:   37 SAITGVHVQGMVLKNAGKECLRMRYFATNCVVQVNEIGPCGIEDFQQGSDGSNGEGVYIGTALNQI-DEKNGDDVVDECTGNVVMNNEIDTQACIPYLPGSEGVDIKEGSYGNVVYGNTISGQMDEETGGISLRGDANIVVDNNVIEGAGTCIRIGGFEE-DGVQYGEDNEVYENTLDRCQNSAIKVNESPQLICDNTI 627
            + +TG+ ++ M +KNAG EC+R+RYFAT   +  N I  CG+EDF+   DG NGEG+Y+GTA  Q+ D KN     D+   N + +N IDTQ       G+E VDIKE S GN+V  N  +GQ D E+ G+  RG  N   +N +    G  +R+GG E+ DGV     N V +N +   +N  +KV  SPQ+IC NTI
Sbjct:  197 NGVTGLRIKNMNIKNAGGECIRLRYFATKNEIVNNLIENCGVEDFKFDGDGKNGEGIYVGTAPEQLKDGKNPTQDPDQSNENWIHDNVIDTQ-------GNECVDIKEASSGNIVEKNKCTGQKDPESAGLDARGSGNTFRNNQIFGCLGAGVRLGGDEKTDGVN----NVVSDNNIYNNKNGGVKVMRSPQVICGNTI 384          
BLAST of mRNA_E-fasciculatus_F_contig15632.3908.1 vs. uniprot
Match: A0A1F7IHP9_9BACT (Uncharacterized protein n=1 Tax=Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_01_FULL_35_13 TaxID=1802055 RepID=A0A1F7IHP9_9BACT)

HSP 1 Score: 143 bits (361), Expect = 2.320e-37
Identity = 87/199 (43.72%), Postives = 118/199 (59.30%), Query Frame = 1
Query:   43 ITGVHVQGMVLKNAGKECLRMRYFATNCVVQVNEIGPCGIEDFQQGSDGSNGEGVYIGTALNQI-DEKNGDDVVDECTGNVVMNNEIDTQACIPYLPGSEGVDIKEGSYGNVVYGNTISGQMDEETGGISLRGDANIVVDNNVIEGAGTCIRIGGFEE-DGVQYGEDNEVYENTLDRCQNSAIKVNESPQ-LICDNTID 630
            +TG+ +  M +KNAG EC+R+RYFA N  +  N I  CGI DF+    G NGEG+YIGTA  Q+ D KN    +DE   N++ +N I+TQ       G+E VDIKEGS GN+V  N  +GQ D+E+ G+  RG  NI   N V    G  +R+GG E+ DG+     N+VYENT+    +  IK   +PQ  IC N ++
Sbjct:  183 VTGLKILSMNIKNAGGECVRLRYFAQNNEIAYNSINRCGIVDFEFKGGGKNGEGIYIGTAPEQLKDGKNPTSDIDESNNNLIHHNTINTQ-------GNECVDIKEGSSGNIVEYNNCTGQKDKESAGLDSRGSKNIFRYNEVYGNLGAGVRLGGDEDNDGIN----NDVYENTIKNNVSGGIKFQRAPQGKICGNKME 370          
BLAST of mRNA_E-fasciculatus_F_contig15632.3908.1 vs. uniprot
Match: A0A1F7I8U6_9BACT (Uncharacterized protein n=1 Tax=Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_01_FULL_37_12 TaxID=1802056 RepID=A0A1F7I8U6_9BACT)

HSP 1 Score: 141 bits (355), Expect = 3.010e-37
Identity = 87/199 (43.72%), Postives = 117/199 (58.79%), Query Frame = 1
Query:   43 ITGVHVQGMVLKNAGKECLRMRYFATNCVVQVNEIGPCGIEDFQQGSDGSNGEGVYIGTALNQI-DEKNGDDVVDECTGNVVMNNEIDTQACIPYLPGSEGVDIKEGSYGNVVYGNTISGQMDEETGGISLRGDANIVVDNNVIEGAGTCIRIGGFEE-DGVQYGEDNEVYENTLDRCQNSAIKVNESPQ-LICDNTID 630
            +TG+ +  M +KNAG EC+R+RYFA    +  N I  CG+ DF     G NGEGVYIGTA  Q+ D KN     DE   N++ +N I+T        G+E VDIKEGS+GN+V  N  +GQ D+E+GG+  RG+ NI   N V   +G  +R+GG E  DG+     N+VYENT+    +  IK   SPQ  IC N ++
Sbjct:   99 VTGLKIMSMSIKNAGGECIRLRYFAQRNEIAYNTIIRCGVSDFSFSGGGKNGEGVYIGTAPEQLKDGKNPTKDRDESNNNLIHHNTINTL-------GNECVDIKEGSWGNIVEYNNCTGQKDKESGGMDSRGNRNIFRFNEVYGNSGAGVRLGGDENSDGIN----NDVYENTIRNNASGGIKFQRSPQGKICGNKME 286          
BLAST of mRNA_E-fasciculatus_F_contig15632.3908.1 vs. uniprot
Match: D8LJ29_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ29_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 2.630e-34
Identity = 86/202 (42.57%), Postives = 114/202 (56.44%), Query Frame = 1
Query:   31 VDSAITGVHVQGMVLKNAGKECLRMRYFATNCVVQVNEIGPCGIEDFQQGSDGSNGEGVYIGTALNQIDEKNGDDVVDECTG---NVVMNNEIDTQACIPYLPGSEGVDIKEGSYGNVVYGNTISGQMDEETGGISLRGDANIVVDNNVIEGAGTCIRIGGFEEDGVQYGEDNEVYENTLDRCQNSAIKVNESPQ-LICDNT 624
            V+SA+ G  + G+ ++N G EC+RMR F TN V+Q N+I  CGI DF+   DG  GE +YIGT+ NQ ++  GD V +   G   N+V  NE+     +P   G+E VDIKEG+  NVV  N    Q D E+G    RG+ N    N  I+  G  IR+GG   DG  YG DN VY N     +  +IK    PQ +ICDN+
Sbjct:    9 VESALIGTVIDGLKIQNCGMECIRMRNFVTNAVIQNNDIENCGIYDFRFQFDGKIGEAIYIGTSSNQWEDGTGDRVTNGPDGSNYNLVTGNEL-----VPR--GNECVDIKEGATMNVVEYNECEDQRDAESGCYDSRGNENTFRYNTAIQCLGAGIRLGGHTIDGFVYGVDNHVYGNEFLETEAGSIKSRVEPQGVICDNS 203          
BLAST of mRNA_E-fasciculatus_F_contig15632.3908.1 vs. uniprot
Match: A0A1F7IR59_9BACT (Uncharacterized protein n=1 Tax=Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_01_FULL_38_12 TaxID=1802061 RepID=A0A1F7IR59_9BACT)

HSP 1 Score: 132 bits (333), Expect = 3.700e-34
Identity = 85/200 (42.50%), Postives = 112/200 (56.00%), Query Frame = 1
Query:   28 GVDSAITGVHVQGMVLKNAGKECLRMRYFATNCVVQVNEIGPCGIEDFQQGSDGSNGEGVYIGTALNQIDE-KNGDDVVDECTGNVVMNNEIDTQACIPYLPGSEGVDIKEGSYGNVVYGNTISGQMDEETGGISLRGDANIVVDNNVIEGAGTCIRIGGFEEDGVQYGEDNEVYENTLDRCQNSAIKVNESPQ-LICDN 621
            G    + G+ +  M +KNAG EC+R+RY+A N  +  N I  CG  D++    G NGEGVYIGTA  Q D+ KN  +  DE  GN + +N  DTQ       G+E VDIKE S  N+V  N  +GQ D E+GG+  RG  NI   NN+   +G  IR+GG   D V     NEVYEN +   +   IK+  +PQ  +CDN
Sbjct:   78 GQHDGVNGLKILNMTIKNAGGECVRLRYYAQNNEIAYNTITSCGRHDYKFDDGGKNGEGVYIGTAPEQRDDGKNPTNDNDESNGNWIHHNFFDTQ-------GNECVDIKENSKYNIVENNECTGQKDPESGGLDSRGGYNIFRYNNIYGNSGAGIRLGG---DTVDENIMNEVYENIIVNNKKGGIKIMTAPQGKMCDN 267          
BLAST of mRNA_E-fasciculatus_F_contig15632.3908.1 vs. uniprot
Match: A0A350ALB2_9CHLR (DUF1565 domain-containing protein n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A350ALB2_9CHLR)

HSP 1 Score: 133 bits (335), Expect = 4.800e-34
Identity = 81/197 (41.12%), Postives = 114/197 (57.87%), Query Frame = 1
Query:   43 ITGVHVQGMVLKNAGKECLRMRYFATNCVVQVNEIGPCGIEDFQQGSDGSNGEGVYIGTALNQI-DEKNGDDVVDECTGNVVMNNEIDTQACIPYLPGSEGVDIKEGSYGNVVYGNTISGQMDEETGGISLRGDANIVVDNNVIEGAGTCIRIGGFEEDGVQYGEDNEVYENTLDRCQNSAIKVNESPQ-LICDNTI 627
            +T + +  M+LKN+G+E +R+RYFA +  +  N I  CG+ DF+ G    NGEG+YIGTA NQ+ D +N  + +D+   N + +N IDTQ       G+E VDIKEGS GN+V  NT SGQ +  T G+  RG  N+  +N +   AG  IR+G    D    G +N+VYEN +    +  IK    PQ  +C N I
Sbjct:  124 VTDLRILNMILKNSGEEAVRLRYFAHDNEIAWNTITNCGVYDFKFGGGADNGEGIYIGTAPNQLNDGRNSTNDLDQSDNNWIHHNTIDTQ-------GAECVDIKEGSSGNIVEYNTCSGQQNPNTAGLQSRGTFNVFRNNTIFGNAGAGIRLG---SDMATEGINNDVYENDIHDNNSGGIKFMSQPQGKVCSNRI 310          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15632.3908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRT2_ECTSI6.540e-9370.09EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A0G0AZ49_9BACT6.430e-3944.44Secreted protein n=1 Tax=Parcubacteria group bacte... [more]
A0A1G2MDL9_9BACT2.250e-3846.56F5/8 type C domain-containing protein n=1 Tax=Cand... [more]
A0A0G1XWI5_9BACT5.360e-3846.04Beta_helix domain-containing protein n=3 Tax=Candi... [more]
A0A0G0APH1_9BACT1.140e-3743.22Beta_helix domain-containing protein n=2 Tax=Candi... [more]
A0A1F7IHP9_9BACT2.320e-3743.72Uncharacterized protein n=1 Tax=Candidatus Roizman... [more]
A0A1F7I8U6_9BACT3.010e-3743.72Uncharacterized protein n=1 Tax=Candidatus Roizman... [more]
D8LJ29_ECTSI2.630e-3442.57FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A1F7IR59_9BACT3.700e-3442.50Uncharacterized protein n=1 Tax=Candidatus Roizman... [more]
A0A350ALB2_9CHLR4.800e-3441.12DUF1565 domain-containing protein n=1 Tax=Dehaloco... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15632contigE-fasciculatus_F_contig15632:50..2943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score297.7
Seed ortholog evalue4.4e-78
Seed eggNOG ortholog2880.D7FRT2
KEGG koko:K06560
KEGG Pathwayko04145,ko05152,map04145,map05152
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04090,ko04091,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-164
Ec32 orthologEc-25_000290.1
Exons5
Model size672
Cds size672
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15632.3908.1prot_E-fasciculatus_F_contig15632.3908.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15632 50..2943 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928037.5747387-CDS-E-fasciculatus_F_contig15632:49..1781622928037.5747387-CDS-E-fasciculatus_F_contig15632:49..178Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15632 50..178 -
1695995798.3607738-CDS-E-fasciculatus_F_contig15632:49..1781695995798.3607738-CDS-E-fasciculatus_F_contig15632:49..178Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15632 50..178 -
1622928037.5869405-CDS-E-fasciculatus_F_contig15632:429..5511622928037.5869405-CDS-E-fasciculatus_F_contig15632:429..551Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15632 430..551 -
1695995798.3722572-CDS-E-fasciculatus_F_contig15632:429..5511695995798.3722572-CDS-E-fasciculatus_F_contig15632:429..551Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15632 430..551 -
1622928037.6022685-CDS-E-fasciculatus_F_contig15632:1224..13151622928037.6022685-CDS-E-fasciculatus_F_contig15632:1224..1315Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15632 1225..1315 -
1695995798.3823707-CDS-E-fasciculatus_F_contig15632:1224..13151695995798.3823707-CDS-E-fasciculatus_F_contig15632:1224..1315Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15632 1225..1315 -
1622928037.6247885-CDS-E-fasciculatus_F_contig15632:1802..19241622928037.6247885-CDS-E-fasciculatus_F_contig15632:1802..1924Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15632 1803..1924 -
1695995798.399318-CDS-E-fasciculatus_F_contig15632:1802..19241695995798.399318-CDS-E-fasciculatus_F_contig15632:1802..1924Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15632 1803..1924 -
1622928037.6424215-CDS-E-fasciculatus_F_contig15632:2735..29431622928037.6424215-CDS-E-fasciculatus_F_contig15632:2735..2943Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15632 2736..2943 -
1695995798.4099672-CDS-E-fasciculatus_F_contig15632:2735..29431695995798.4099672-CDS-E-fasciculatus_F_contig15632:2735..2943Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15632 2736..2943 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15632.3908.1

>prot_E-fasciculatus_F_contig15632.3908.1 ID=prot_E-fasciculatus_F_contig15632.3908.1|Name=mRNA_E-fasciculatus_F_contig15632.3908.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=224bp
GSRDPSEVDGVDSAITGVHVQGMVLKNAGKECLRMRYFATNCVVQVNEIG
PCGIEDFQQGSDGSNGEGVYIGTALNQIDEKNGDDVVDECTGNVVMNNEI
DTQACIPYLPGSEGVDIKEGSYGNVVYGNTISGQMDEETGGISLRGDANI
VVDNNVIEGAGTCIRIGGFEEDGVQYGEDNEVYENTLDRCQNSAIKVNES
PQLICDNTIDISENPNDDDLVRGE
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mRNA from alignment at E-fasciculatus_F_contig15632:50..2943-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15632.3908.1 ID=mRNA_E-fasciculatus_F_contig15632.3908.1|Name=mRNA_E-fasciculatus_F_contig15632.3908.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2894bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15632:50..2943- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTTCGAGGGACCCCAGCGAAGTCGACGGTGTTGACTCGGCGATCACCGG CGTCCACGTCCAGGGAATGGTGTTGAAAAACGCGGGCAAGGAGTGCTTGA GGATGAGGTACTTCGCCACGAACTGCGTGGTCCAGGTGAACGAGATCGGC CCCTGCGGGATAGAGGACTTCCAGCAGGGCTCTGACGGCTCCAACGGAGA GGGCGTTTGTGAGTATAGTACAGTCAGTACAGTACAATAGTGGCTATTTC ATCTTGTATGTTTAGGAAATACATATTCAACCATTATGCACATGTAATTA TAGAGAGACTGCCAATTACCCGTGCGAGATTTAACCACGGCCGTCGAAGG GGCTGGGGTATTTTACAACCACAGCTCGAGATAAATATATTAGAGGACCG TTCTTGTTAATTTTGTTCTTTTGGTCGCGAGTTTTCTGCTGGACACATGC AATGCGTTTTTCTTATTGTCAAAGAGTCGAGGTCGGCGAGATCGTCCCTT CCCTGCGGCGCTGGTGGTTACCCTGTAGTTGAGTATGACCTGGATGCCAG TTTTGCATCCTTCGCCGAAACATGTTTGTCTCCACCCCGGGGGGGGTTCT TTTGAGTTGGGTTGGATAGGAACGCGCCTGCCCTGGCCTTTTGAATCCTC TCGCCACCGTTGCTGCAAAAAGGTTGCTATGGTTTGTGATTACTCAACGC ACACACTGTAGTCTCAATCAATTAGGACTCCCATCCACATGGAGAGTCAG GGAGAGAGAGAGAGAGGGAGAGAGAGAAAAGAGCTTGAGTATTTGAACGG CAAGGCGATTGTGCTCAGGCATGCTTGAGGCACTCGCTCAGACTGGCGGG ACAAGGGCACAGCAGTAGTTGGTCAACGCGTGTCAGCAGCAAATCAAATC CGTTGCTGCCTCCCCCGAAACGTACAGGAGTACAAGTACAACGTTTGACG ATAGGTCTTCCCCCCGCCCCCGCCCCCCGCTACCGGTGGTCTCTGCATCA CCCTGTGTCTCGACGGCAGACATCGGGACGGCTTTGAATCAGATCGATGA GAAGAACGGCGACGATGTGGTGGACGAGTGCACAGGCAACGTGGTGATGA ACAACGAGATCGACACGCAGGCATGTATACCTTATTTGCCTGTGCACGTG CTGAATCGATTCTTCCTGGTGTAGTCTATGGTACCACCTCGGTGCTAATT GTAATATCTTGTTCGTCCTGCAGGACCCCCCCGCGGGTGATTGGCACGTG GCGTACGTTGTCTCCCGCCTCACTCGTTTTCTGAGTCAAGTAACGTCGGT GCGTCACGTCACCCCCAAATGGTTTGTGTTTGATGCGGTAGAGATCCTGG TTGTGTGCCGGTATATGCCCAGAAACACAGAATGACCTCGGCCATTCTGT CTGTGCCTGCCGAAAACACCGGTGCTATACCATACCGGGCAAGGGCACCA TTCGACCGGCTCTGAACCCCCCCCCCCCCCGATGTAGTCCCGTCTGTTTG AAACCGTTTCCGGACGTCCTTCGGGGGGATTTATTGTCTATCTCTCTGCG AGATCGGCATGACACCAGCCAGCCAACCAACCCCGACATTTTCCGCCATA TTTTCGCGCTGCCGTTTTGGTTGCGCAGGGTAGCGAGGGTGTTGACATCA AGGAAGGGTCGTACGGCAACGTGGTCTACGGCAACACCATCAGTGGGCAG ATGGACGAAGAAACCGGGGGTAAGCGAGCAATCAGCGACAACAGTATGCA GTACGACACTTTCTCCGTGTGTCTGGTCTGAGTCTGCGCATAGAGACGGT TTTTTTTTTCATTCCCTGTCTTGCCTTTTCCTCTCCTCCCCGGCCCCTTG GCGCAGCCGTCAGTCAATAATACCACCCTTGTATGTATAGTTAGTATACA CGCTACAGCAGTCCCACACACACTTGAGGAGAACCTCTAATTTTGGTTCA CTTGAGATCGTCTAATTTGTGTCCACCTTCAGAACCTCCTTGTTTTGGTC CCATTTGGAACCTCTAGTTTTGGCCGATGCCGGGGTTCTTAGTTCCTATT GTATTATTGTATTGTATCATAATAGGGGTACTATTGTATCATAATAGGGT TCCTATTGTATCATAATAGGGGTACTATTGTATCATAATAGGGGTACTAT TGTATCATAATAGGGGTGCTATTGTATCATAATAGGGGTACTATTGTATC ATAATAGGGTTACTATTGTATCATAATAGGGGTACTATTGTATCATAATA GGGTTACTATTGTATCATAATAGGGGTGCTACAAATGGCCGCTATACATC GGTTTTACTTGCTGTAAGGTCCCAAGCCGATAATGCTGAAGTACGTGCAT TAGAGATTTTGAAGGCTATACAACATCAATTTCTCGTTCCAGGGATCAGT CTCCGCGGAGACGCAAACATCGTCGTCGACAACAACGTCATCGAAGGCGC GGGGACGTGCATCCGGATCGGGGGCTTCGAGGAAGACGGTGTGCAATACG GAGAAGACAACGAGGTAATTATAATTTTAGTACAGAAAGATGCGTAAAAA GTTTCCTTATGGTACATTAAAGGATGTTGCTGATCGACCTGCTGTGTGGT GGCTGACTTATGACGACACCGCTAATACTGGCGTTTGCTCGTCGACATTT GACCTGGTTTCGGACCTGCTGTGTGATGGCTGACCATATGACGGCACCCC TCTAACACTGACGTTTGCTGATGGGCATTTGACCTGGCTGGTTTGTTTCA TGTTGGCCGGGACAGGTGTACGAGAACACCCTGGACCGTTGCCAGAACTC GGCCATCAAGGTCAACGAGAGCCCCCAACTCATCTGCGACAACACCATCG ACATTTCGGAAAATCCCAATGACGATGATCTGGTGAGAGGAGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15632:50..2943-

>mRNA_E-fasciculatus_F_contig15632.3908.1 ID=mRNA_E-fasciculatus_F_contig15632.3908.1|Name=mRNA_E-fasciculatus_F_contig15632.3908.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1344bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15632:50..2943- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTTCGAGGGACCCCAGCGAAGTCGACGGTGTTGACTCGGCGATCACCGG
CGTCCACGTCCAGGGAATGGTGTTGAAAAACGCGGGCAAGGAGTGCTTGA
GGATGAGGTACTTCGCCACGAACTGCGTGGTCCAGGTGAACGAGATCGGC
CCCTGCGGGATAGAGGACTTCCAGCAGGGCTCTGACGGCTCCAACGGAGA
GGGCGTTTGGTTCGAGGGACCCCAGCGAAGTCGACGGTGTTGACTCGGCG
ATCACCGGCGTCCACGTCCAGGGAATGGTGTTGAAAAACGCGGGCAAGGA
GTGCTTGAGGATGAGGTACTTCGCCACGAACTGCGTGGTCCAGGTGAACG
AGATCGGCCCCTGCGGGATAGAGGACTTCCAGCAGGGCTCTGACGGCTCC
AACGGAGAGGGCGTTTACATCGGGACGGCTTTGAATCAGATCGATGAGAA
GAACGGCGACGATGTGGTGGACGAGTGCACAGGCAACGTGGTGATGAACA
ACGAGATCGACACGCAGGCATGTATACCTTATTTGCCTACATCGGGACGG
CTTTGAATCAGATCGATGAGAAGAACGGCGACGATGTGGTGGACGAGTGC
ACAGGCAACGTGGTGATGAACAACGAGATCGACACGCAGGCATGTATACC
TTATTTGCCTGGTAGCGAGGGTGTTGACATCAAGGAAGGGTCGTACGGCA
ACGTGGTCTACGGCAACACCATCAGTGGGCAGATGGACGAAGAAACCGGG
GGGTAGCGAGGGTGTTGACATCAAGGAAGGGTCGTACGGCAACGTGGTCT
ACGGCAACACCATCAGTGGGCAGATGGACGAAGAAACCGGGGGGATCAGT
CTCCGCGGAGACGCAAACATCGTCGTCGACAACAACGTCATCGAAGGCGC
GGGGACGTGCATCCGGATCGGGGGCTTCGAGGAAGACGGTGTGCAATACG
GAGAAGACAACGAGGGATCAGTCTCCGCGGAGACGCAAACATCGTCGTCG
ACAACAACGTCATCGAAGGCGCGGGGACGTGCATCCGGATCGGGGGCTTC
GAGGAAGACGGTGTGCAATACGGAGAAGACAACGAGGTGTACGAGAACAC
CCTGGACCGTTGCCAGAACTCGGCCATCAAGGTCAACGAGAGCCCCCAAC
TCATCTGCGACAACACCATCGACATTTCGGAAAATCCCAATGACGATGAT
CTGGTGAGAGGAGAGGTGTACGAGAACACCCTGGACCGTTGCCAGAACTC
GGCCATCAAGGTCAACGAGAGCCCCCAACTCATCTGCGACAACACCATCG
ACATTTCGGAAAATCCCAATGACGATGATCTGGTGAGAGGAGAG
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