mRNA_E-fasciculatus_F_contig1563.3905.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1563.3905.1
Unique NamemRNA_E-fasciculatus_F_contig1563.3905.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1563.3905.1 vs. uniprot
Match: D8LTG5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTG5_ECTSI)

HSP 1 Score: 296 bits (759), Expect = 6.280e-101
Identity = 155/179 (86.59%), Postives = 157/179 (87.71%), Query Frame = 1 
Query:    1 MHSVIRIARREQPPKDPPAGHVTKDGSERLFDNRVSEALLHRGNNLDQQASLLAQAMDVHQAVAPLLWICLVCLIDLHALEARVSDIFIINAGCQVLHRCIRINARHTAVVEQGCRAIAVMSEPSFTSRTRFMVEKIQDAIHEARPTPDTSTMSHKLVGDRTNYLLGRVLKLLPSPPRP 537
            MHSVIRIARREQ PKDPPAGHVTKDG ERL DNRVSEAL HRGN LDQQASLLAQ MDVHQAVAPLLWICLVCLIDLHALEARVSDIFIINAGCQVLHRCIRINARHTAVVEQ CR +AVMSEPSFTSRTRFMVE IQDAIHE           HKLVGDRTNY+LGRVLKLLP PP P
Sbjct:    1 MHSVIRIARREQSPKDPPAGHVTKDGPERLSDNRVSEAL-HRGNKLDQQASLLAQVMDVHQAVAPLLWICLVCLIDLHALEARVSDIFIINAGCQVLHRCIRINARHTAVVEQVCRVVAVMSEPSFTSRTRFMVENIQDAIHE-----------HKLVGDRTNYVLGRVLKLLPLPPPP 167
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1563.3905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTG5_ECTSI6.280e-10186.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1563contigE-fasciculatus_F_contig1563:1180..2164 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_005530.1
Exons3
Model size537
Cds size537
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1563.3905.1prot_E-fasciculatus_F_contig1563.3905.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1563 1180..2164 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928037.2662187-CDS-E-fasciculatus_F_contig1563:1179..14751622928037.2662187-CDS-E-fasciculatus_F_contig1563:1179..1475Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1563 1180..1475 +
1695995798.2062366-CDS-E-fasciculatus_F_contig1563:1179..14751695995798.2062366-CDS-E-fasciculatus_F_contig1563:1179..1475Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1563 1180..1475 +
1622928037.2826257-CDS-E-fasciculatus_F_contig1563:1659..18251622928037.2826257-CDS-E-fasciculatus_F_contig1563:1659..1825Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1563 1660..1825 +
1695995798.2147245-CDS-E-fasciculatus_F_contig1563:1659..18251695995798.2147245-CDS-E-fasciculatus_F_contig1563:1659..1825Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1563 1660..1825 +
1622928037.29523-CDS-E-fasciculatus_F_contig1563:2089..21641622928037.29523-CDS-E-fasciculatus_F_contig1563:2089..2164Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1563 2090..2164 +
1695995798.2265024-CDS-E-fasciculatus_F_contig1563:2089..21641695995798.2265024-CDS-E-fasciculatus_F_contig1563:2089..2164Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1563 2090..2164 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1563.3905.1

>prot_E-fasciculatus_F_contig1563.3905.1 ID=prot_E-fasciculatus_F_contig1563.3905.1|Name=mRNA_E-fasciculatus_F_contig1563.3905.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=179bp
MHSVIRIARREQPPKDPPAGHVTKDGSERLFDNRVSEALLHRGNNLDQQA
SLLAQAMDVHQAVAPLLWICLVCLIDLHALEARVSDIFIINAGCQVLHRC
IRINARHTAVVEQGCRAIAVMSEPSFTSRTRFMVEKIQDAIHEARPTPDT
STMSHKLVGDRTNYLLGRVLKLLPSPPRP
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mRNA from alignment at E-fasciculatus_F_contig1563:1180..2164+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1563.3905.1 ID=mRNA_E-fasciculatus_F_contig1563.3905.1|Name=mRNA_E-fasciculatus_F_contig1563.3905.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=985bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1563:1180..2164+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCATTCCGTCATTCGCATCGCACGGCGGGAACAACCGCCGAAGGATCC
ACCTGCGGGGCACGTGACCAAAGATGGCTCGGAGAGGTTGTTCGACAACC
GCGTTTCAGAAGCGTTGCTCCACCGGGGGAACAACCTTGACCAACAGGCG
TCACTCTTGGCTCAGGCGATGGACGTTCACCAGGCCGTGGCACCCTTGCT
ATGGATCTGTCTCGTTTGTTTGATCGATCTGCATGCGCTGGAGGCCAGGG
TGTCGGACATTTTCATAATCAACGCCGGCTGCCAGGTGCTGCACAGGTAC
GTGCGGTAAAATGACTTGCTCTTCGTTCACGTACTCCGACGCAAGCATCT
TAGTTTGCTCATTTTTTTTTGCTCCCAATCATGATTAGCCCCGAAAAGGT
ACACGGTTGGTTGACCTCGCGTCCCCCGGCCGGGGCTATCTAATTGACTT
CGTTTCGGAACATTTCTGTAACCCCGCAAGGTGCATCCGCATCAACGCAC
GGCACACTGCCGTCGTGGAGCAGGGCTGCCGGGCAATCGCGGTCATGAGC
GAGCCTAGCTTTACGTCACGTACGCGATTCATGGTGGAGAAGATTCAAGA
CGCCATCCACGAGGCACGCCCGACGCCCGACACAAGTACAATGAGCGTTC
AAGAACGGTCACCGTCTCTAGAGCTACAGCACCCTCATTTTGAAACATAG
CATATCTATTGTAAGTGTCGAGAGGTTTCTAGTTTCTAGGGTACAGCTAC
CGACAGGAATCTTTCTGTACTCCATCCTAGCCTGTACGCCTTGCTCTTAT
GGACTCCAGCAGTAACGGTTAATGTCCACTAAGGTCATCATCTCTGTCTC
TACCTGTAGCACGACTGGTGATACACGACAATTCATTGTACCATGTTCCT
TTGTAATGAGCACAAACTGGTGGGAGATCGCACGAACTACTTGTTGGGGC
GAGTTCTCAAGCTTCTTCCCTCGCCCCCCCGACCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1563:1180..2164+

>mRNA_E-fasciculatus_F_contig1563.3905.1 ID=mRNA_E-fasciculatus_F_contig1563.3905.1|Name=mRNA_E-fasciculatus_F_contig1563.3905.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1074bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1563:1180..2164+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCATTCCGTCATTCGCATCGCACGGCGGGAACAACCGCCGAAGGATCC
ACCTGCGGGGCACGTGACCAAAGATGGCTCGGAGAGGTTGTTCGACAACC
GCGTTTCAGAAGCGTTGCTCCACCGGGGGAACAACCTTGACCAACAGGCG
TCACTCTTGGCTCAGGCGATGGACGTTCACCAGGCCGTGGCACCCTTGCT
ATGGATCTGTCTCGTTTGTTTGATCGATCTGCATGCGCTGGAGGCCAGGG
TGTCGGACATTTTCATAATCAACGCCGGCTGCCAGGTGCTGCACAGATGC
ATTCCGTCATTCGCATCGCACGGCGGGAACAACCGCCGAAGGATCCACCT
GCGGGGCACGTGACCAAAGATGGCTCGGAGAGGTTGTTCGACAACCGCGT
TTCAGAAGCGTTGCTCCACCGGGGGAACAACCTTGACCAACAGGCGTCAC
TCTTGGCTCAGGCGATGGACGTTCACCAGGCCGTGGCACCCTTGCTATGG
ATCTGTCTCGTTTGTTTGATCGATCTGCATGCGCTGGAGGCCAGGGTGTC
GGACATTTTCATAATCAACGCCGGCTGCCAGGTGCTGCACAGGTGCATCC
GCATCAACGCACGGCACACTGCCGTCGTGGAGCAGGGCTGCCGGGCAATC
GCGGTCATGAGCGAGCCTAGCTTTACGTCACGTACGCGATTCATGGTGGA
GAAGATTCAAGACGCCATCCACGAGGCACGCCCGACGCCCGACACAAGTA
CAATGAGCGTGCATCCGCATCAACGCACGGCACACTGCCGTCGTGGAGCA
GGGCTGCCGGGCAATCGCGGTCATGAGCGAGCCTAGCTTTACGTCACGTA
CGCGATTCATGGTGGAGAAGATTCAAGACGCCATCCACGAGGCACGCCCG
ACGCCCGACACAAGTACAATGAGCCACAAACTGGTGGGAGATCGCACGAA
CTACTTGTTGGGGCGAGTTCTCAAGCTTCTTCCCTCGCCCCCCCGACCCC
ACAAACTGGTGGGAGATCGCACGAACTACTTGTTGGGGCGAGTTCTCAAG
CTTCTTCCCTCGCCCCCCCGACCC
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