prot_E-fasciculatus_F_contig15451.3822.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig15451.3822.1
Unique Nameprot_E-fasciculatus_F_contig15451.3822.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length130
Homology
BLAST of mRNA_E-fasciculatus_F_contig15451.3822.1 vs. uniprot
Match: A0A835YVF9_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVF9_9STRA)

HSP 1 Score: 222 bits (565), Expect = 1.030e-64
Identity = 101/129 (78.29%), Postives = 120/129 (93.02%), Query Frame = 0
Query:    1 ESEQACVETVRALGPEGLDRSGLSRASITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHEEDRVIDHFGEQLRSAG 129
            ESE A VETVRA+G  G+++  +++AS+TLRFPRNP+IGDKFSSRHGQKGVMSILWP  DMPFTESG++PD+IINPHAFPSRMTIGMLIESMAGK+GA+HG +QDATPF+FHE++RVIDHFGEQL+SAG
Sbjct:  865 ESEMAYVETVRAVGGAGINKEAMAKASMTLRFPRNPIIGDKFSSRHGQKGVMSILWPQSDMPFTESGMTPDIIINPHAFPSRMTIGMLIESMAGKAGALHGHFQDATPFSFHEKNRVIDHFGEQLKSAG 993          
BLAST of mRNA_E-fasciculatus_F_contig15451.3822.1 vs. uniprot
Match: A0A7S3UTQ0_HETAK (DNA-directed RNA polymerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTQ0_HETAK)

HSP 1 Score: 211 bits (538), Expect = 4.530e-64
Identity = 99/130 (76.15%), Postives = 116/130 (89.23%), Query Frame = 0
Query:    1 ESEQACVETVRALGPEG-LDRSGLSRASITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHEEDRVIDHFGEQLRSAG 129
            ++E A V+ VR LG EG L ++ L+R S+TLR+PRNP+IGDKFSSRHGQKGV+SILWP E+MPFTESG++PDVIINPHAFPSRMTIGMLIESMAGK+GAMHG YQDATPF FHE+ R +DHFGEQLR+AG
Sbjct:  195 DTETAVVQDVRLLGAEGGLPQADLTRVSLTLRYPRNPIIGDKFSSRHGQKGVLSILWPQENMPFTESGMTPDVIINPHAFPSRMTIGMLIESMAGKAGAMHGHYQDATPFTFHEQRRAVDHFGEQLRAAG 324          
BLAST of mRNA_E-fasciculatus_F_contig15451.3822.1 vs. uniprot
Match: A0A7R9U7R0_9STRA (DNA-directed RNA polymerase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7R0_9STRA)

HSP 1 Score: 213 bits (542), Expect = 8.050e-64
Identity = 96/127 (75.59%), Postives = 114/127 (89.76%), Query Frame = 0
Query:    3 EQACVETVRALGPEGLDRSGLSRASITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHEEDRVIDHFGEQLRSAG 129
            E+ACV+T+R LG +G ++  L R S+TLR PRNP+IGDKFSSRHGQKGVMS+LWP EDMPF+ESG+SPDVIINPHAFPSRMTIGML+ESMAGKSGA+HG YQDATPF F+E+D  I++FGEQLR+AG
Sbjct:  290 ERACVQTIRLLGSDGKNKDKLRRVSVTLRIPRNPIIGDKFSSRHGQKGVMSVLWPQEDMPFSESGISPDVIINPHAFPSRMTIGMLVESMAGKSGALHGMYQDATPFQFNEKDTAINYFGEQLRAAG 416          
BLAST of mRNA_E-fasciculatus_F_contig15451.3822.1 vs. uniprot
Match: A0A7S2V1Y1_9STRA (DNA-directed RNA polymerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1Y1_9STRA)

HSP 1 Score: 202 bits (513), Expect = 1.500e-61
Identity = 95/132 (71.97%), Postives = 110/132 (83.33%), Query Frame = 0
Query:    3 EQACVETVRAL-----GPEGLDRSGLSRASITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHEEDRVIDHFGEQLRSAG 129
            E+ACV+ +R L       E     G++    TLR+PRNP+IGDKFSSRHGQKGV+SILWP EDMPFTESG++PDVIINPHAFPSRMTIGMLIESMAGKSGA+HG YQD+TPF FHE+DR ID+FGEQLR+AG
Sbjct:   78 EKACVQDIRVLTGKVAAQETAGIGGVTYMRYTLRYPRNPIIGDKFSSRHGQKGVLSILWPQEDMPFTESGMTPDVIINPHAFPSRMTIGMLIESMAGKSGALHGRYQDSTPFTFHEKDRAIDYFGEQLRAAG 209          
BLAST of mRNA_E-fasciculatus_F_contig15451.3822.1 vs. uniprot
Match: W7TET2_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TET2_9STRA)

HSP 1 Score: 212 bits (539), Expect = 3.790e-61
Identity = 102/131 (77.86%), Postives = 113/131 (86.26%), Query Frame = 0
Query:    1 ESEQACVETVRALGPEGLDRSG--LSRASITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHEEDRVIDHFGEQLRSAG 129
            ESE ACVE VR LG EG   +   L   SITLRFPR P+IGDKFSSRHGQKGV+SILWP EDMPFTESG+SPD+IINPHAFPSRMTIGMLIESMAGKSG++HG YQDATPF+FHE+ R ID+FGEQLR+AG
Sbjct:  924 ESEVACVEAVRLLGLEGTSGATEPLDTVSITLRFPRRPIIGDKFSSRHGQKGVLSILWPQEDMPFTESGMSPDIIINPHAFPSRMTIGMLIESMAGKSGSLHGMYQDATPFSFHEDRRAIDYFGEQLRAAG 1054          
BLAST of mRNA_E-fasciculatus_F_contig15451.3822.1 vs. uniprot
Match: A0A7S1YVL7_TRICV (DNA-directed RNA polymerase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YVL7_TRICV)

HSP 1 Score: 200 bits (509), Expect = 8.780e-61
Identity = 101/139 (72.66%), Postives = 112/139 (80.58%), Query Frame = 0
Query:    1 ESEQACVETVRALGPEGLDRSGLSRAS--------ITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHE--EDRVIDHFGEQLRSAG 129
            E E+ACV++VR LG       G SRAS        ITLRFPRNPVIGDKFSSRHGQKGVMSILWP  DMPF+E+G+ PDVIINPHAFPSRMTIGMLIESMAGKSGA+HG YQDATPF+FHE  +   +DHFGEQLR+AG
Sbjct:   78 EKEKACVQSVRRLGQPVKVARGASRASANQDDAISITLRFPRNPVIGDKFSSRHGQKGVMSILWPQVDMPFSETGVCPDVIINPHAFPSRMTIGMLIESMAGKSGALHGMYQDATPFSFHESGDKLAVDHFGEQLRAAG 216          
BLAST of mRNA_E-fasciculatus_F_contig15451.3822.1 vs. uniprot
Match: A0A7S3HBZ7_9STRA (DNA-directed RNA polymerase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBZ7_9STRA)

HSP 1 Score: 189 bits (481), Expect = 8.380e-57
Identity = 91/134 (67.91%), Postives = 110/134 (82.09%), Query Frame = 0
Query:    1 ESEQACVETVRALGPE--GLDR---SGLSRASITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHEEDRVIDHFGEQLRSAG 129
            + E A V TVR +G    G  R   S L + SITLR+ RNPVIGDKFSSRHGQKG +S+LWP E+MPF+ESG+SPDV+INPHAFPSRMTIGML+ESMAGKSGA+HGT+Q+ATPF FHE+ +VID+ G+QL+ AG
Sbjct:   72 DQESAFVSTVRIIGSHSGGKTRGAKSNLRKVSITLRYRRNPVIGDKFSSRHGQKGTLSVLWPQENMPFSESGMSPDVLINPHAFPSRMTIGMLVESMAGKSGAVHGTFQNATPFRFHEDQKVIDYVGQQLKEAG 205          
BLAST of mRNA_E-fasciculatus_F_contig15451.3822.1 vs. uniprot
Match: A0A7S3V7B4_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V7B4_9STRA)

HSP 1 Score: 198 bits (503), Expect = 2.760e-56
Identity = 97/134 (72.39%), Postives = 113/134 (84.33%), Query Frame = 0
Query:    1 ESEQACVETVRALGPEGLDRSGLSR---ASITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHEE-DRV-IDHFGEQLRSAG 129
            E E+AC++ VR LG     +  ++R    SITLR PRNPVIGDKFSSRHGQKGV+SILWP  DMPF+ESG+SPDVIINPHAFPSRMTIGMLIESMAGKSGAMHG +QDATPF+FHE  D++ +D+FGEQL+SAG
Sbjct:  929 EKEKACIQQVRLLGQPSASKDKVNRDDIVSITLRIPRNPVIGDKFSSRHGQKGVLSILWPQTDMPFSESGISPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGMFQDATPFSFHESGDKIAVDYFGEQLQSAG 1062          
BLAST of mRNA_E-fasciculatus_F_contig15451.3822.1 vs. uniprot
Match: A0A7S2W2W3_9STRA (DNA-directed RNA polymerase subunit beta (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W2W3_9STRA)

HSP 1 Score: 197 bits (502), Expect = 3.260e-56
Identity = 95/133 (71.43%), Postives = 109/133 (81.95%), Query Frame = 0
Query:    1 ESEQACVETVRALGPEGLDRS--GLSRASITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHEEDR--VIDHFGEQLRSAG 129
            E E+AC++ VR LG  G      G  + S+TLRFPRNPVIGDKF+SRHGQKGVMSILWP  DMPF+ESG+SPDVIINPHAFPSRMTIGMLIESMA K+GA+HG YQDATPF+FHE      +DHFGEQL++AG
Sbjct:  787 EKEKACIQAVRLLGQPGSKSGSEGNEKVSLTLRFPRNPVIGDKFASRHGQKGVMSILWPQVDMPFSESGISPDVIINPHAFPSRMTIGMLIESMAAKAGALHGIYQDATPFSFHESGSKIAVDHFGEQLQAAG 919          
BLAST of mRNA_E-fasciculatus_F_contig15451.3822.1 vs. uniprot
Match: A0A7S0CJA4_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CJA4_9STRA)

HSP 1 Score: 191 bits (485), Expect = 3.810e-56
Identity = 99/141 (70.21%), Postives = 113/141 (80.14%), Query Frame = 0
Query:    1 ESEQACVETVRALGPEGLDRSGLS----------RASITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHEE-DRV-IDHFGEQLRSAG 129
            E E   ++ VRALGP+  D+ G S          R SIT+R  RNPVIGDKFSSRHGQKGV+SILWP  DMPF+ESG+SPDVIINPHAFPSRMTIGMLIESMAGKSGA+HG YQDATPF+FHE  D++ IDHFGEQL++AG
Sbjct:  347 EKEPHYIQAVRALGPKD-DKIGSSSRKGGREHIERVSITMRVNRNPVIGDKFSSRHGQKGVLSILWPHADMPFSESGISPDVIINPHAFPSRMTIGMLIESMAGKSGALHGMYQDATPFSFHESGDKIAIDHFGEQLQAAG 486          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15451.3822.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YVF9_9STRA1.030e-6478.29DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A7S3UTQ0_HETAK4.530e-6476.15DNA-directed RNA polymerase n=1 Tax=Heterosigma ak... [more]
A0A7R9U7R0_9STRA8.050e-6475.59DNA-directed RNA polymerase n=1 Tax=Pinguiococcus ... [more]
A0A7S2V1Y1_9STRA1.500e-6171.97DNA-directed RNA polymerase n=1 Tax=Fibrocapsa jap... [more]
W7TET2_9STRA3.790e-6177.86DNA-directed RNA polymerase subunit beta n=2 Tax=M... [more]
A0A7S1YVL7_TRICV8.780e-6172.66DNA-directed RNA polymerase n=1 Tax=Trieres chinen... [more]
A0A7S3HBZ7_9STRA8.380e-5767.91DNA-directed RNA polymerase n=1 Tax=Spumella elong... [more]
A0A7S3V7B4_9STRA2.760e-5672.39DNA-directed RNA polymerase subunit beta n=1 Tax=C... [more]
A0A7S2W2W3_9STRA3.260e-5671.43DNA-directed RNA polymerase subunit beta (Fragment... [more]
A0A7S0CJA4_9STRA3.810e-5670.21DNA-directed RNA polymerase (Fragment) n=1 Tax=Pro... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007120DNA-directed RNA polymerase, subunit 2, hybrid-binding domainPFAMPF00562RNA_pol_Rpb2_6coord: 4..125
e-value: 9.9E-42
score: 143.4
IPR037033DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyGENE3D2.40.270.10coord: 2..129
e-value: 4.0E-39
score: 136.3
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 2..129
NoneNo IPR availablePANTHERPTHR20856:SF5DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA2coord: 2..129
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 3..129
IPR007121RNA polymerase, beta subunit, conserved sitePROSITEPS01166RNA_POL_BETAcoord: 39..51

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15451contigE-fasciculatus_F_contig15451:1932..3022 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15451.3822.1mRNA_E-fasciculatus_F_contig15451.3822.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig15451 1932..3022 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig15451.3822.1 ID=prot_E-fasciculatus_F_contig15451.3822.1|Name=mRNA_E-fasciculatus_F_contig15451.3822.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=130bp
ESEQACVETVRALGPEGLDRSGLSRASITLRFPRNPVIGDKFSSRHGQKG
VMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMH
GTYQDATPFAFHEEDRVIDHFGEQLRSAG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007121RNA_pol_bsu_CS
IPR015712DNA-dir_RNA_pol_su2
IPR037033DNA-dir_RNAP_su2_hyb_sf
IPR007120DNA-dir_RNAP_su2_dom