mRNA_E-fasciculatus_F_contig15451.3822.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig15451.3822.1 vs. uniprot
Match: A0A835YVF9_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVF9_9STRA) HSP 1 Score: 222 bits (565), Expect = 1.030e-64 Identity = 101/129 (78.29%), Postives = 120/129 (93.02%), Query Frame = 1
Query: 1 ESEQACVETVRALGPEGLDRSGLSRASITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHEEDRVIDHFGEQLRSAG 387
ESE A VETVRA+G G+++ +++AS+TLRFPRNP+IGDKFSSRHGQKGVMSILWP DMPFTESG++PD+IINPHAFPSRMTIGMLIESMAGK+GA+HG +QDATPF+FHE++RVIDHFGEQL+SAG
Sbjct: 865 ESEMAYVETVRAVGGAGINKEAMAKASMTLRFPRNPIIGDKFSSRHGQKGVMSILWPQSDMPFTESGMTPDIIINPHAFPSRMTIGMLIESMAGKAGALHGHFQDATPFSFHEKNRVIDHFGEQLKSAG 993
BLAST of mRNA_E-fasciculatus_F_contig15451.3822.1 vs. uniprot
Match: A0A7S3UTQ0_HETAK (DNA-directed RNA polymerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTQ0_HETAK) HSP 1 Score: 211 bits (538), Expect = 4.530e-64 Identity = 99/130 (76.15%), Postives = 116/130 (89.23%), Query Frame = 1
Query: 1 ESEQACVETVRALGPEG-LDRSGLSRASITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHEEDRVIDHFGEQLRSAG 387
++E A V+ VR LG EG L ++ L+R S+TLR+PRNP+IGDKFSSRHGQKGV+SILWP E+MPFTESG++PDVIINPHAFPSRMTIGMLIESMAGK+GAMHG YQDATPF FHE+ R +DHFGEQLR+AG
Sbjct: 195 DTETAVVQDVRLLGAEGGLPQADLTRVSLTLRYPRNPIIGDKFSSRHGQKGVLSILWPQENMPFTESGMTPDVIINPHAFPSRMTIGMLIESMAGKAGAMHGHYQDATPFTFHEQRRAVDHFGEQLRAAG 324
BLAST of mRNA_E-fasciculatus_F_contig15451.3822.1 vs. uniprot
Match: A0A7R9U7R0_9STRA (DNA-directed RNA polymerase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7R0_9STRA) HSP 1 Score: 213 bits (542), Expect = 8.050e-64 Identity = 96/127 (75.59%), Postives = 114/127 (89.76%), Query Frame = 1
Query: 7 EQACVETVRALGPEGLDRSGLSRASITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHEEDRVIDHFGEQLRSAG 387
E+ACV+T+R LG +G ++ L R S+TLR PRNP+IGDKFSSRHGQKGVMS+LWP EDMPF+ESG+SPDVIINPHAFPSRMTIGML+ESMAGKSGA+HG YQDATPF F+E+D I++FGEQLR+AG
Sbjct: 290 ERACVQTIRLLGSDGKNKDKLRRVSVTLRIPRNPIIGDKFSSRHGQKGVMSVLWPQEDMPFSESGISPDVIINPHAFPSRMTIGMLVESMAGKSGALHGMYQDATPFQFNEKDTAINYFGEQLRAAG 416
BLAST of mRNA_E-fasciculatus_F_contig15451.3822.1 vs. uniprot
Match: A0A7S2V1Y1_9STRA (DNA-directed RNA polymerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1Y1_9STRA) HSP 1 Score: 202 bits (513), Expect = 1.500e-61 Identity = 95/132 (71.97%), Postives = 110/132 (83.33%), Query Frame = 1
Query: 7 EQACVETVRAL-----GPEGLDRSGLSRASITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHEEDRVIDHFGEQLRSAG 387
E+ACV+ +R L E G++ TLR+PRNP+IGDKFSSRHGQKGV+SILWP EDMPFTESG++PDVIINPHAFPSRMTIGMLIESMAGKSGA+HG YQD+TPF FHE+DR ID+FGEQLR+AG
Sbjct: 78 EKACVQDIRVLTGKVAAQETAGIGGVTYMRYTLRYPRNPIIGDKFSSRHGQKGVLSILWPQEDMPFTESGMTPDVIINPHAFPSRMTIGMLIESMAGKSGALHGRYQDSTPFTFHEKDRAIDYFGEQLRAAG 209
BLAST of mRNA_E-fasciculatus_F_contig15451.3822.1 vs. uniprot
Match: W7TET2_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TET2_9STRA) HSP 1 Score: 212 bits (539), Expect = 3.790e-61 Identity = 102/131 (77.86%), Postives = 113/131 (86.26%), Query Frame = 1
Query: 1 ESEQACVETVRALGPEGLDRSG--LSRASITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHEEDRVIDHFGEQLRSAG 387
ESE ACVE VR LG EG + L SITLRFPR P+IGDKFSSRHGQKGV+SILWP EDMPFTESG+SPD+IINPHAFPSRMTIGMLIESMAGKSG++HG YQDATPF+FHE+ R ID+FGEQLR+AG
Sbjct: 924 ESEVACVEAVRLLGLEGTSGATEPLDTVSITLRFPRRPIIGDKFSSRHGQKGVLSILWPQEDMPFTESGMSPDIIINPHAFPSRMTIGMLIESMAGKSGSLHGMYQDATPFSFHEDRRAIDYFGEQLRAAG 1054
BLAST of mRNA_E-fasciculatus_F_contig15451.3822.1 vs. uniprot
Match: A0A7S1YVL7_TRICV (DNA-directed RNA polymerase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YVL7_TRICV) HSP 1 Score: 200 bits (509), Expect = 8.780e-61 Identity = 101/139 (72.66%), Postives = 112/139 (80.58%), Query Frame = 1
Query: 1 ESEQACVETVRALGPEGLDRSGLSRAS--------ITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHE--EDRVIDHFGEQLRSAG 387
E E+ACV++VR LG G SRAS ITLRFPRNPVIGDKFSSRHGQKGVMSILWP DMPF+E+G+ PDVIINPHAFPSRMTIGMLIESMAGKSGA+HG YQDATPF+FHE + +DHFGEQLR+AG
Sbjct: 78 EKEKACVQSVRRLGQPVKVARGASRASANQDDAISITLRFPRNPVIGDKFSSRHGQKGVMSILWPQVDMPFSETGVCPDVIINPHAFPSRMTIGMLIESMAGKSGALHGMYQDATPFSFHESGDKLAVDHFGEQLRAAG 216
BLAST of mRNA_E-fasciculatus_F_contig15451.3822.1 vs. uniprot
Match: A0A7S3HBZ7_9STRA (DNA-directed RNA polymerase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBZ7_9STRA) HSP 1 Score: 189 bits (481), Expect = 8.380e-57 Identity = 91/134 (67.91%), Postives = 110/134 (82.09%), Query Frame = 1
Query: 1 ESEQACVETVRALGPE--GLDR---SGLSRASITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHEEDRVIDHFGEQLRSAG 387
+ E A V TVR +G G R S L + SITLR+ RNPVIGDKFSSRHGQKG +S+LWP E+MPF+ESG+SPDV+INPHAFPSRMTIGML+ESMAGKSGA+HGT+Q+ATPF FHE+ +VID+ G+QL+ AG
Sbjct: 72 DQESAFVSTVRIIGSHSGGKTRGAKSNLRKVSITLRYRRNPVIGDKFSSRHGQKGTLSVLWPQENMPFSESGMSPDVLINPHAFPSRMTIGMLVESMAGKSGAVHGTFQNATPFRFHEDQKVIDYVGQQLKEAG 205
BLAST of mRNA_E-fasciculatus_F_contig15451.3822.1 vs. uniprot
Match: A0A7S3V7B4_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V7B4_9STRA) HSP 1 Score: 198 bits (503), Expect = 2.760e-56 Identity = 97/134 (72.39%), Postives = 113/134 (84.33%), Query Frame = 1
Query: 1 ESEQACVETVRALGPEGLDRSGLSR---ASITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHEE-DRV-IDHFGEQLRSAG 387
E E+AC++ VR LG + ++R SITLR PRNPVIGDKFSSRHGQKGV+SILWP DMPF+ESG+SPDVIINPHAFPSRMTIGMLIESMAGKSGAMHG +QDATPF+FHE D++ +D+FGEQL+SAG
Sbjct: 929 EKEKACIQQVRLLGQPSASKDKVNRDDIVSITLRIPRNPVIGDKFSSRHGQKGVLSILWPQTDMPFSESGISPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGMFQDATPFSFHESGDKIAVDYFGEQLQSAG 1062
BLAST of mRNA_E-fasciculatus_F_contig15451.3822.1 vs. uniprot
Match: A0A7S2W2W3_9STRA (DNA-directed RNA polymerase subunit beta (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W2W3_9STRA) HSP 1 Score: 197 bits (502), Expect = 3.260e-56 Identity = 95/133 (71.43%), Postives = 109/133 (81.95%), Query Frame = 1
Query: 1 ESEQACVETVRALGPEGLDRS--GLSRASITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHEEDR--VIDHFGEQLRSAG 387
E E+AC++ VR LG G G + S+TLRFPRNPVIGDKF+SRHGQKGVMSILWP DMPF+ESG+SPDVIINPHAFPSRMTIGMLIESMA K+GA+HG YQDATPF+FHE +DHFGEQL++AG
Sbjct: 787 EKEKACIQAVRLLGQPGSKSGSEGNEKVSLTLRFPRNPVIGDKFASRHGQKGVMSILWPQVDMPFSESGISPDVIINPHAFPSRMTIGMLIESMAAKAGALHGIYQDATPFSFHESGSKIAVDHFGEQLQAAG 919
BLAST of mRNA_E-fasciculatus_F_contig15451.3822.1 vs. uniprot
Match: A0A7S0CJA4_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CJA4_9STRA) HSP 1 Score: 191 bits (485), Expect = 3.810e-56 Identity = 99/141 (70.21%), Postives = 113/141 (80.14%), Query Frame = 1
Query: 1 ESEQACVETVRALGPEGLDRSGLS----------RASITLRFPRNPVIGDKFSSRHGQKGVMSILWPAEDMPFTESGLSPDVIINPHAFPSRMTIGMLIESMAGKSGAMHGTYQDATPFAFHEE-DRV-IDHFGEQLRSAG 387
E E ++ VRALGP+ D+ G S R SIT+R RNPVIGDKFSSRHGQKGV+SILWP DMPF+ESG+SPDVIINPHAFPSRMTIGMLIESMAGKSGA+HG YQDATPF+FHE D++ IDHFGEQL++AG
Sbjct: 347 EKEPHYIQAVRALGPKD-DKIGSSSRKGGREHIERVSITMRVNRNPVIGDKFSSRHGQKGVLSILWPHADMPFSESGISPDVIINPHAFPSRMTIGMLIESMAGKSGALHGMYQDATPFSFHESGDKIAIDHFGEQLQAAG 486 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15451.3822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig15451.3822.1 >prot_E-fasciculatus_F_contig15451.3822.1 ID=prot_E-fasciculatus_F_contig15451.3822.1|Name=mRNA_E-fasciculatus_F_contig15451.3822.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=130bp ESEQACVETVRALGPEGLDRSGLSRASITLRFPRNPVIGDKFSSRHGQKGback to top mRNA from alignment at E-fasciculatus_F_contig15451:1932..3022- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig15451.3822.1 ID=mRNA_E-fasciculatus_F_contig15451.3822.1|Name=mRNA_E-fasciculatus_F_contig15451.3822.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1091bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15451:1932..3022- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15451:1932..3022- >mRNA_E-fasciculatus_F_contig15451.3822.1 ID=mRNA_E-fasciculatus_F_contig15451.3822.1|Name=mRNA_E-fasciculatus_F_contig15451.3822.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=780bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15451:1932..3022- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |