mRNA_E-fasciculatus_F_contig15448.3817.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15448.3817.1
Unique NamemRNA_E-fasciculatus_F_contig15448.3817.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15448.3817.1 vs. uniprot
Match: A0A6H5KLP2_9PHAE (J domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLP2_9PHAE)

HSP 1 Score: 624 bits (1610), Expect = 9.530e-221
Identity = 370/433 (85.45%), Postives = 384/433 (88.68%), Query Frame = 1 
Query:    1 AERNRTMGKRQRELRVELERREKEAASGSSFSSPSSRAGGLGAGGEARVAAARLDELRKKGEAERQRQSADWSVKSANAKXXXXXXXSAPSSGLSGANGXXXX-DDDGLEERTVRVKWKTKKESHSDYTLDVLFSKFGVVQSVSIEEGKGDRALVVFASAMSADAAMAAYGGREGGSETMRTSYVGKRRAKRSAFAPRRHTMSPRIPTGDGQAEGLSSFRDHESITMMNLRKEAERQALIRKMAEEEGLAVGNGKKNAAAENGAVTSTTEVGSGVEGEYQSEVSPSDSSVGSKTAGIVTTPNASQKGEVHAVGSAAGEAS---PGIGRSGSEAAGGSVRAGNRPAFPVPPSMAASEMPATSDLKARRKSDALLSAVSGGSSAGVEKRPPVPAGIGAFGIGSKSVPTTPVSRRSMVGTPIDESDILARMMAMKR 1287
            AERNRTMGKRQRELRVELERREKEAASGSSFSSPSSRAGGLGAGG ARVAAARLDELRKKGEAERQRQSADWSVKSA  K       SAPSSGLSGANG     DDDGLEERT+RVKWK KKESHSDYTLDVLFSKFGVVQSVSIEEG G+RA+VVFASA+SADAAMAAYG REGGSETMRTSYVGKRRAKRSAFAPRRHTMSPRIPTGDGQAEGLSSFRDHESITMM+LRKEAERQALIRKMAEEEGLAVG+G+K+AAA NGA TST EV SG EGE+QSEVSPSDS VGSKTAG V +P ASQ+GE HAVGSA  EAS    GIG SGSEAAGGSVRAGN PAFPV PSM+A +MPATSD KARRKSDALLSA+ GGS  GV   P VPAGIGAF IGSKSVPTTPVSRRSM GTPIDESDILARMM MKR
Sbjct:   89 AERNRTMGKRQRELRVELERREKEAASGSSFSSPSSRAGGLGAGGAARVAAARLDELRKKGEAERQRQSADWSVKSAKVKSASARKRSAPSSGLSGANGGGGVFDDDGLEERTLRVKWKNKKESHSDYTLDVLFSKFGVVQSVSIEEGTGNRAMVVFASAVSADAAMAAYGSREGGSETMRTSYVGKRRAKRSAFAPRRHTMSPRIPTGDGQAEGLSSFRDHESITMMHLRKEAERQALIRKMAEEEGLAVGDGQKDAAAGNGAATSTMEVTSGGEGEHQSEVSPSDSGVGSKTAGNVASPKASQRGEAHAVGSAGDEASLGIGGIGASGSEAAGGSVRAGNTPAFPVSPSMSARKMPATSDFKARRKSDALLSAMGGGS--GVRPSP-VPAGIGAFVIGSKSVPTTPVSRRSMAGTPIDESDILARMMTMKR 518
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BLAST of mRNA_E-fasciculatus_F_contig15448.3817.1 vs. uniprot
Match: A0A7S2E6Q6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E6Q6_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 8.250e-7
Identity = 49/137 (35.77%), Postives = 77/137 (56.20%), Query Frame = 1 
Query:  337 VRVKWKTKKESHSDYTLDVLFSK-FGVVQSVSIEEGKGDRALVVFASAMSADAAMAAYGGREGGSETMRTSYVGKRRAKRSAFAPRRHTMSPRIPTGDGQAEGLSSFRDHESITMMNLRKEAERQALIRKMAEEEGL 744
            +R+KWK+KK SHS+ ++  L SK FG V+ V +   KG+ ALV FA+A S    +  Y      S++MR ++VG R+ +    + R+     R     G A   ++ RD E++    LR+ AER+ + R+M  EEG+
Sbjct:   98 IRLKWKSKKISHSEESIAQLLSKKFGRVEDVELLGVKGNAALVTFANASSCLPCVEEYLD----SDSMRATFVGSRKKEELRKSFRKSGEGDREMMDTGTAT-TTTHRDSETLEERKLRQAAEREKISRQM--EEGI 227
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15448.3817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KLP2_9PHAE9.530e-22185.45J domain-containing protein n=2 Tax=Ectocarpus Tax... [more]
A0A7S2E6Q6_9STRA8.250e-735.77Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15448contigE-fasciculatus_F_contig15448:1398..2690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score644.4
Seed ortholog evalue3.6e-182
Seed eggNOG ortholog2880.D8LB96
KEGG koko:K09537
EggNOG free text desc.toxin transport
EggNOG OGsCOG2214@1,KOG0691@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHeat shock protein 40 like protein/ DnaJ domain containing protein
Ec32 orthologEc-27_004710.1
Exons1
Model size1293
Cds size1275
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928022.6223414-CDS-E-fasciculatus_F_contig15448:1397..26721622928022.6223414-CDS-E-fasciculatus_F_contig15448:1397..2672Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15448 1398..2672 -
1695995792.227314-CDS-E-fasciculatus_F_contig15448:1397..26721695995792.227314-CDS-E-fasciculatus_F_contig15448:1397..2672Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15448 1398..2672 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928022.6354296-UTR-E-fasciculatus_F_contig15448:2672..26901622928022.6354296-UTR-E-fasciculatus_F_contig15448:2672..2690Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15448 2673..2690 -
1695995792.2417355-UTR-E-fasciculatus_F_contig15448:2672..26901695995792.2417355-UTR-E-fasciculatus_F_contig15448:2672..2690Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15448 2673..2690 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15448.3817.1prot_E-fasciculatus_F_contig15448.3817.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15448 1398..2672 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15448.3817.1

>prot_E-fasciculatus_F_contig15448.3817.1 ID=prot_E-fasciculatus_F_contig15448.3817.1|Name=mRNA_E-fasciculatus_F_contig15448.3817.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=425bp
MGKRQRELRVELERREKEAASGSSFSSPSSRAGGLGAGGEARVAAARLDE
LRKKGEAERQRQSADWSVKSANAKSASARKRSAPSSGLSGANGGGDGDDD
GLEERTVRVKWKTKKESHSDYTLDVLFSKFGVVQSVSIEEGKGDRALVVF
ASAMSADAAMAAYGGREGGSETMRTSYVGKRRAKRSAFAPRRHTMSPRIP
TGDGQAEGLSSFRDHESITMMNLRKEAERQALIRKMAEEEGLAVGNGKKN
AAAENGAVTSTTEVGSGVEGEYQSEVSPSDSSVGSKTAGIVTTPNASQKG
EVHAVGSAAGEASPGIGRSGSEAAGGSVRAGNRPAFPVPPSMAASEMPAT
SDLKARRKSDALLSAVSGGSSAGVEKRPPVPAGIGAFGIGSKSVPTTPVS
RRSMVGTPIDESDILARMMAMKRS*
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mRNA from alignment at E-fasciculatus_F_contig15448:1398..2690-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15448.3817.1 ID=mRNA_E-fasciculatus_F_contig15448.3817.1|Name=mRNA_E-fasciculatus_F_contig15448.3817.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1293bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15448:1398..2690- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGGAGCGAAATCGAACCATGGGGAAGAGGCAGCGGGAGCTCCGCGTGGA
GCTAGAGAGACGAGAAAAGGAGGCCGCGAGCGGGTCTTCGTTTTCGTCGC
CGTCGAGCCGTGCCGGAGGCTTGGGAGCGGGAGGCGAGGCCAGGGTGGCC
GCCGCAAGGCTCGACGAGCTGAGGAAGAAGGGCGAGGCCGAGCGCCAGAG
GCAGAGCGCGGATTGGAGCGTGAAGAGCGCGAACGCAAAGAGCGCCAGCG
CCAGGAAGCGCAGCGCGCCCTCCTCGGGCCTTTCGGGCGCGAACGGCGGC
GGGGACGGCGATGATGATGGCCTAGAGGAGCGGACCGTGCGGGTGAAGTG
GAAGACCAAGAAGGAGTCCCACTCGGACTACACCCTGGACGTGCTCTTCA
GCAAGTTCGGCGTGGTGCAGTCGGTGTCGATCGAGGAGGGTAAGGGGGAC
AGGGCGCTGGTCGTGTTCGCGTCCGCCATGTCTGCGGACGCCGCCATGGC
CGCTTACGGCGGCCGAGAAGGCGGCAGCGAGACCATGCGGACGAGCTACG
TCGGCAAACGGCGGGCAAAGCGGAGCGCCTTCGCCCCTCGCCGTCACACC
ATGTCCCCGAGGATACCAACAGGCGATGGGCAGGCGGAAGGCCTAAGCTC
CTTCCGGGACCACGAGTCTATCACGATGATGAACCTGCGCAAGGAAGCGG
AGCGTCAAGCGCTTATACGGAAGATGGCAGAAGAGGAAGGTCTGGCTGTG
GGCAATGGGAAGAAGAATGCTGCTGCGGAAAACGGGGCTGTAACGTCCAC
AACGGAAGTGGGGAGCGGGGTAGAGGGGGAATATCAGAGTGAAGTTTCGC
CTAGTGACAGCAGCGTAGGTAGTAAAACGGCTGGGATCGTAACTACTCCA
AATGCAAGCCAGAAGGGCGAAGTACATGCGGTCGGCTCAGCTGCTGGCGA
AGCAAGTCCTGGGATTGGAAGGAGCGGAAGTGAAGCCGCAGGGGGTAGTG
TGAGGGCGGGAAACAGGCCAGCTTTTCCTGTCCCGCCCTCGATGGCGGCC
AGTGAGATGCCTGCCACAAGCGATCTGAAGGCGAGAAGAAAAAGCGACGC
CCTCCTGTCAGCAGTGAGTGGCGGAAGCAGTGCAGGGGTTGAGAAGCGTC
CGCCCGTTCCTGCTGGGATCGGTGCGTTTGGAATCGGGAGTAAGAGTGTG
CCCACCACCCCAGTCTCGAGAAGAAGCATGGTGGGGACACCAATAGATGA
GAGTGATATTTTGGCACGGATGATGGCGATGAAGCGTTCATGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15448:1398..2690-

>mRNA_E-fasciculatus_F_contig15448.3817.1 ID=mRNA_E-fasciculatus_F_contig15448.3817.1|Name=mRNA_E-fasciculatus_F_contig15448.3817.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2550bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15448:1398..2690- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGGAAGAGGCAGCGGGAGCTCCGCGTGGAGCTAGAGAGACGAGAAAA
GGAGGCCGCGAGCGGGTCTTCGTTTTCGTCGCCGTCGAGCCGTGCCGGAG
GCTTGGGAGCGGGAGGCGAGGCCAGGGTGGCCGCCGCAAGGCTCGACGAG
CTGAGGAAGAAGGGCGAGGCCGAGCGCCAGAGGCAGAGCGCGGATTGGAG
CGTGAAGAGCGCGAACGCAAAGAGCGCCAGCGCCAGGAAGCGCAGCGCGC
CCTCCTCGGGCCTTTCGGGCGCGAACGGCGGCGGGGACGGCGATGATGAT
GGCCTAGAGGAGCGGACCGTGCGGGTGAAGTGGAAGACCAAGAAGGAGTC
CCACTCGGACTACACCCTGGACGTGCTCTTCAGCAAGTTCGGCGTGGTGC
AGTCGGTGTCGATCGAGGAGGGTAAGGGGGACAGGGCGCTGGTCGTGTTC
GCGTCCGCCATGTCTGCGGACGCCGCCATGGCCGCTTACGGCGGCCGAGA
AGGCGGCAGCGAGACCATGCGGACGAGCTACGTCGGCAAACGGCGGGCAA
AGCGGAGCGCCTTCGCCCCTCGCCGTCACACCATGTCCCCGAGGATACCA
ACAGGCGATGGGCAGGCGGAAGGCCTAAGCTCCTTCCGGGACCACGAGTC
TATCACGATGATGAACCTGCGCAAGGAAGCGGAGCGTCAAGCGCTTATAC
GGAAGATGGCAGAAGAGGAAGGTCTGGCTGTGGGCAATGGGAAGAAGAAT
GCTGCTGCGGAAAACGGGGCTGTAACGTCCACAACGGAAGTGGGGAGCGG
GGTAGAGGGGGAATATCAGAGTGAAGTTTCGCCTAGTGACAGCAGCGTAG
GTAGTAAAACGGCTGGGATCGTAACTACTCCAAATGCAAGCCAGAAGGGC
GAAGTACATGCGGTCGGCTCAGCTGCTGGCGAAGCAAGTCCTGGGATTGG
AAGGAGCGGAAGTGAAGCCGCAGGGGGTAGTGTGAGGGCGGGAAACAGGC
CAGCTTTTCCTGTCCCGCCCTCGATGGCGGCCAGTGAGATGCCTGCCACA
AGCGATCTGAAGGCGAGAAGAAAAAGCGACGCCCTCCTGTCAGCAGTGAG
TGGCGGAAGCAGTGCAGGGGTTGAGAAGCGTCCGCCCGTTCCTGCTGGGA
TCGGTGCGTTTGGAATCGGGAGTAAGAGTGTGCCCACCACCCCAGTCTCG
AGAAGAAGCATGGTGGGGACACCAATAGATGAGAGTGATATTTTGGCACG
GATGATGGCGATGAAGCGTTCATGAATGGGGAAGAGGCAGCGGGAGCTCC
GCGTGGAGCTAGAGAGACGAGAAAAGGAGGCCGCGAGCGGGTCTTCGTTT
TCGTCGCCGTCGAGCCGTGCCGGAGGCTTGGGAGCGGGAGGCGAGGCCAG
GGTGGCCGCCGCAAGGCTCGACGAGCTGAGGAAGAAGGGCGAGGCCGAGC
GCCAGAGGCAGAGCGCGGATTGGAGCGTGAAGAGCGCGAACGCAAAGAGC
GCCAGCGCCAGGAAGCGCAGCGCGCCCTCCTCGGGCCTTTCGGGCGCGAA
CGGCGGCGGGGACGGCGATGATGATGGCCTAGAGGAGCGGACCGTGCGGG
TGAAGTGGAAGACCAAGAAGGAGTCCCACTCGGACTACACCCTGGACGTG
CTCTTCAGCAAGTTCGGCGTGGTGCAGTCGGTGTCGATCGAGGAGGGTAA
GGGGGACAGGGCGCTGGTCGTGTTCGCGTCCGCCATGTCTGCGGACGCCG
CCATGGCCGCTTACGGCGGCCGAGAAGGCGGCAGCGAGACCATGCGGACG
AGCTACGTCGGCAAACGGCGGGCAAAGCGGAGCGCCTTCGCCCCTCGCCG
TCACACCATGTCCCCGAGGATACCAACAGGCGATGGGCAGGCGGAAGGCC
TAAGCTCCTTCCGGGACCACGAGTCTATCACGATGATGAACCTGCGCAAG
GAAGCGGAGCGTCAAGCGCTTATACGGAAGATGGCAGAAGAGGAAGGTCT
GGCTGTGGGCAATGGGAAGAAGAATGCTGCTGCGGAAAACGGGGCTGTAA
CGTCCACAACGGAAGTGGGGAGCGGGGTAGAGGGGGAATATCAGAGTGAA
GTTTCGCCTAGTGACAGCAGCGTAGGTAGTAAAACGGCTGGGATCGTAAC
TACTCCAAATGCAAGCCAGAAGGGCGAAGTACATGCGGTCGGCTCAGCTG
CTGGCGAAGCAAGTCCTGGGATTGGAAGGAGCGGAAGTGAAGCCGCAGGG
GGTAGTGTGAGGGCGGGAAACAGGCCAGCTTTTCCTGTCCCGCCCTCGAT
GGCGGCCAGTGAGATGCCTGCCACAAGCGATCTGAAGGCGAGAAGAAAAA
GCGACGCCCTCCTGTCAGCAGTGAGTGGCGGAAGCAGTGCAGGGGTTGAG
AAGCGTCCGCCCGTTCCTGCTGGGATCGGTGCGTTTGGAATCGGGAGTAA
GAGTGTGCCCACCACCCCAGTCTCGAGAAGAAGCATGGTGGGGACACCAA
TAGATGAGAGTGATATTTTGGCACGGATGATGGCGATGAAGCGTTCATGA
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