mRNA_E-fasciculatus_F_contig1538.3777.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1538.3777.1
Unique NamemRNA_E-fasciculatus_F_contig1538.3777.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1538.3777.1 vs. uniprot
Match: D7FIM1_ECTSI (Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIM1_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 7.720e-45
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 1 
Query:  547 MDGEGMGHPDSLCNECDEHTLHEPDDVLTCLECGYTACGSPPRRHMLRHCLTQPGDGHCFAASRERAEIFCARCCD 774
            MDG+GMGHP S+C+ECDEHTLHEPDDVLTCLECGYTACGSPPRRHMLRHCLTQPGDGHCFAASRERAEIFCARCCD
Sbjct:    1 MDGDGMGHPASMCHECDEHTLHEPDDVLTCLECGYTACGSPPRRHMLRHCLTQPGDGHCFAASRERAEIFCARCCD 76
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1538.3777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIM1_ECTSI7.720e-4594.74Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1538contigE-fasciculatus_F_contig1538:1456..4734 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.6
Seed ortholog evalue7.6e-40
Seed eggNOG ortholog2880.D7FIM1
Preferred nameUSP22
KEGG koko:K11366,ko:K11848,ko:K11873
GOsGO:0000018,GO:0000123,GO:0000124,GO:0000902,GO:0000904,GO:0003674,GO:0003682,GO:0003712,GO:0003713,GO:0003824,GO:0004843,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006282,GO:0006325,GO:0006338,GO:0006342,GO:0006348,GO:0006355,GO:0006357,GO:0006396,GO:0006464,GO:0006473,GO:0006475,GO:0006479,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0006996,GO:0007154,GO:0007275,GO:0007346,GO:0007399,GO:0007409,GO:0007411,GO:0007412,GO:0008150,GO:0008152,GO:0008213,GO:0008233,GO:0008234,GO:0008347,GO:0008380,GO:0009056,GO:0009057,GO:0009605,GO:0009653,GO:0009790,GO:0009792,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010001,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010569,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010941,GO:0010942,GO:0016043,GO:0016070,GO:0016458,GO:0016477,GO:0016567,GO:0016569,GO:0016570,GO:0016571,GO:0016573,GO:0016574,GO:0016578,GO:0016579,GO:0016604,GO:0016607,GO:0016787,GO:0018022,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0019783,GO:0019899,GO:0019941,GO:0021782,GO:0022008,GO:0030030,GO:0030154,GO:0030163,GO:0030182,GO:0030374,GO:0031175,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031647,GO:0031974,GO:0031981,GO:0032259,GO:0032446,GO:0032501,GO:0032502,GO:0032947,GO:0032989,GO:0032990,GO:0032991,GO:0034641,GO:0034729,GO:0034968,GO:0035616,GO:0036211,GO:0036459,GO:0040011,GO:0040029,GO:0042063,GO:0042221,GO:0042330,GO:0042393,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043543,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045787,GO:0045814,GO:0045892,GO:0045893,GO:0045931,GO:0045934,GO:0045935,GO:0046483,GO:0046695,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051052,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051568,GO:0051603,GO:0051674,GO:0051726,GO:0060255,GO:0061564,GO:0061578,GO:0065007,GO:0065008,GO:0070011,GO:0070013,GO:0070461,GO:0070536,GO:0070646,GO:0070647,GO:0071108,GO:0071704,GO:0071819,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097485,GO:0099114,GO:0101005,GO:0120036,GO:0120039,GO:0140096,GO:0140110,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1902493,GO:1902494,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1905368,GO:1990234,GO:1990380,GO:2000112,GO:2000113,GO:2000779,GO:2001020,GO:2001032,GO:2001141
EggNOG free text desc.ubiquitin carboxyl-terminal hydrolase
EggNOG OGsCOG5560@1,KOG1867@1,KOG1867@2759,KOG1870@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03021,ko03036,ko04121
Hectar predicted targeting categoryother localisation
Exons4
Model size774
Cds size627
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1538.3777.1prot_E-fasciculatus_F_contig1538.3777.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1538 1456..4587 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928014.7076175-CDS-E-fasciculatus_F_contig1538:1455..16471622928014.7076175-CDS-E-fasciculatus_F_contig1538:1455..1647Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1538 1456..1647 -
1695995789.4749055-CDS-E-fasciculatus_F_contig1538:1455..16471695995789.4749055-CDS-E-fasciculatus_F_contig1538:1455..1647Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1538 1456..1647 -
1622928014.7479148-CDS-E-fasciculatus_F_contig1538:3103..31931622928014.7479148-CDS-E-fasciculatus_F_contig1538:3103..3193Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1538 3104..3193 -
1695995789.4866357-CDS-E-fasciculatus_F_contig1538:3103..31931695995789.4866357-CDS-E-fasciculatus_F_contig1538:3103..3193Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1538 3104..3193 -
1622928014.7642684-CDS-E-fasciculatus_F_contig1538:4182..44001622928014.7642684-CDS-E-fasciculatus_F_contig1538:4182..4400Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1538 4183..4400 -
1695995789.4958253-CDS-E-fasciculatus_F_contig1538:4182..44001695995789.4958253-CDS-E-fasciculatus_F_contig1538:4182..4400Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1538 4183..4400 -
1622928014.7759624-CDS-E-fasciculatus_F_contig1538:4460..45871622928014.7759624-CDS-E-fasciculatus_F_contig1538:4460..4587Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1538 4461..4587 -
1695995789.5053992-CDS-E-fasciculatus_F_contig1538:4460..45871695995789.5053992-CDS-E-fasciculatus_F_contig1538:4460..4587Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1538 4461..4587 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928014.789193-UTR-E-fasciculatus_F_contig1538:4587..47341622928014.789193-UTR-E-fasciculatus_F_contig1538:4587..4734Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1538 4588..4734 -
1695995789.5151956-UTR-E-fasciculatus_F_contig1538:4587..47341695995789.5151956-UTR-E-fasciculatus_F_contig1538:4587..4734Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1538 4588..4734 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1538.3777.1

>prot_E-fasciculatus_F_contig1538.3777.1 ID=prot_E-fasciculatus_F_contig1538.3777.1|Name=mRNA_E-fasciculatus_F_contig1538.3777.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=209bp
MVKTAPGKATPTTPKAVGSAGRSAGAAAAAAAAAAAAAAAESLRTSTAAA
PPNSRTSGSSGNHAGAASARTVAGGAATGSSAGSEPSKMTCTCPHLVDHP
NRQDLLRKLVDVRIEVNTALILKEKKTVGVFGAMDGEGMGHPDSLCNECD
EHTLHEPDDVLTCLECGYTACGSPPRRHMLRHCLTQPGDGHCFAASRERA
EIFCARCCD
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mRNA from alignment at E-fasciculatus_F_contig1538:1456..4734-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1538.3777.1 ID=mRNA_E-fasciculatus_F_contig1538.3777.1|Name=mRNA_E-fasciculatus_F_contig1538.3777.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3279bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1538:1456..4734- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CACCCGACACGCTCACCTGCGCCCTGCGCTGTTGCGTCAGCCTAGTGTGT
GGTACCGACAAAGGGGGAGGGGCAGCCGATTGCTCGAACTACTGCTTCGT
GTCAGATTTGCCATCATAAAAAAATCAAGTCACATCATCAACGAACTATG
GTCAAGACAGCTCCAGGCAAGGCAACGCCGACCACTCCGAAGGCAGTCGG
CTCTGCGGGGAGATCGGCAGGAGCAGCCGCAGCCGCAGCAGCAGCAGCAG
CAGCGGCGGCGGCAGCAGAATCTTCAGGAGGTGGGCCTACCAAGAAGCCA
TCGTCCTCGTCAAAAAAAGCTGAAACAGCAGTGATGCGGACGTCAACAGC
TGCTGCGCCTCCAAACAGCAGAACCAGCGGTAGTTCTGGCAACCACGCAG
GGGCAGCCTCCGCGCGAACAGTAGCAGGAGGAGCGGCCACAGGTTCTTCT
GCGGGTAGTGAACCTTCCAAGATGACGTGCACTTGTCCGCACCTTGTGGA
TCACCCTAACCGCCAGGATCTGCTGCGAAAGCTGGTGGACGTGCGAATCG
AGGTGCGTGTGTGGTACATACATAGACTTTGGAATAGACAGGGGCAACAT
ACAAGGCACTGGCTGCTGTAAGTTGTGGGTGTGCGGATCAAGTACGTAGC
AGCAGACATGCAGGGCTGTATGCGTAGGGGATACGTTATCTTGGACGTAA
TACCTGCTGCTGCTGACGAACGTAAGCATGTGAACGCTGCGTCGTGTTGG
GAGAAGCCCGATCTCAGCCATGAATGAAGAGGTCGGTGGGCGTAAGATGT
AAGATGTGGCTCGCTGAGAAAGGTCCGCGATATGTAGCGCTCTTCATTCC
GATGGAAGATGCGACATGAGTCCATCTCGGCAGGCGGAGAGCCCACGGCG
CGTGCGCGTTGCAGTCTAAATCTCGGTGTCCTGTGTCGGCATGCTTGTGG
TAGAGCACATGAGTCCATGGCGTTTGAGGTTGCCGTGCTGCCATGAGTCC
ATCCATCCCGCCTTCGTGCATTCGTGAACCTCCCCAGCAAGTAACTCCGA
ATCATCAATGCCGGTCAACAGCAGTCCCGTATCTAGCTGGACCCAGGATT
GCAGGATGAAGGTCGAGGCAAATGCCGAACTATTCATGGCGCACCATTCT
TTGATACCTTTTCTCTCCGACCCACCTTCGCGGAGGTACGGGATTCAGGG
GGGTGCACCCCTCCCCGCGGGTCTCGCAGAGGGACAACTGCATTGAAGAC
GGCCTTCTTTCCAGCCCATGATAAAAATGTATTGATGAAGGCGGGCACCG
CAGAAGGAAGGCAGAGAAAAAAAGTAGCCCTCCTGCTGTGTGAGCCCGGG
TGCTGCGTCCAGGATAGACCGAGAAAGGTATAAGGACTGATGTCGAGATT
AAATGAACTGACCAAAACCATATATTTCAACGTGGCACCTTGCGTGACCA
CGTGTGACGAAGAATATCCTCCATTCAAGTACGAACAACAGACGGGTAGC
CCCCCCCCCCCATACTCGTTTTTCGTGCTTGCCCGGAAAAGGTGAACACA
GCGCTCATCCTGAAGGAGAAGAAGACCGTGGGAGTGTTTGGAGCCATGGA
CGGGGAGGGTATGGGGCACCCGGACTCTTTGGTAAGCACGAAGGGCAGTG
CGCAAGGCTGTTTTTTTTTGTTTTTCCCTTTGACAGTTTCGGACCCAAAC
AAAGGCTGAAATATGGAAATATATTTTGAGTGAAGCCATCGTTCTGAGGA
TCGTTCCCTGACAGTGTCGCCAGAACCAGAAACAAGAAACAAGAAAAAAA
TATTTAGATTCAAGAACCGAGCGAGGCTCGTTTTGTGGAAAATTTTGCCA
ATTTTTCGATTTAACAACTTTCTTCGAAACAACACACCCACACCAGCCAC
CACCACCACACCAGACCCACACGCACACACAGCAGTCTGCTACGAACGAA
CATGTCCACCCGCCCAAAGAGAAGGGCAGCGCCCAGCGCAAAGGCCCTGG
AGTTGGCGCGCCACGAACACAAAAAGGGGAAGGCTGCACGGTCAGAAAAC
CAAGTTGGGGTTGTTGGTTGTTGCGCGGCTTTAGGTCAGCAACACGCGCC
CGTCACACACAGGTAGGTGAGGCAAGGGGAAAGAAGAGCGCCGGAACCGC
GGAGACAACGACAACCGACGACGTAGAGGAGGTGGCAGCACCGCCACCAA
AGGGCAGAGGGGAGGAAGAGCACGCAGTTGCCTCCTGGTGACGCGCCGCA
AGAGTATTCTCTGCTTCTACTTGAAAAGAGCGTTTAACTTCGATTTGCCC
CCGCCCCAAAAAAAACACCACCCTCTCCCCAACGCTTGAAATGCGATACA
CAGCACTTCGTTCAGGGCCGCTGGCCAGTATGTTTACTTCCTGTCGCTGT
ACTGGTGCGAGTTCGTGTGCTGGGGTTGAGGGGGCAACACAGACACGCAC
ACGCATGCAGCACGCACACTCAACAGCAGTGGGAGCGCTGTGATATCAGG
GTGCCGCTGTCACGCAGCGCACCACAGAAACCAGCAGTACCTGCGAACAG
GGGAAGTTCGTTGGGTGACTGTCGTCCCACAGCCAATCACACGAAGCCGC
CTTAAATCGGAAAATATTCACCTGCAGGAAGTTTCCAGGAAACTTTCTTA
TCTCAAAATCTGTTTCCTTATCTCAGTAAATTTGGGGCCCCAGTCCGAAA
CTGTGTATTATTGGACTCTGTCGTCTGCCCCTATATGTAGGGTAGTGTTA
AGGGCTTTGAAGCACCGACTGTGCGGTTGCTGGTAGCGCAGCAGTCTATC
TAGGTCTTGTGCTGCTCACGGTGTCTCCATTTTGTCCTTCTACAATGTGT
TCTCCGGGGCGGTCCATTGTTGGTCGTTTGACACTTGAGTGCTGCTGTGG
TGCGATCCAAGCACCGTTACTTTGTGCCGCTCAAATGAGCACACCACCGC
CCATACACGCTCTGACGTGCTCCCTTTCCATTGTTTCTTTGCACGTGCGC
ACCTTCCTTTTCGACCCTAACCCTAACCCTAACCCTAAGCCCCCTCCTCT
ATCCCCTCCGGAACCACAACGACGCCATGACCAACAGTGCAACGAGTGCG
ACGAGCACACCCTGCACGAGCCCGACGACGTCCTCACCTGCCTAGAGTGC
GGCTACACCGCCTGCGGGTCCCCGCCCCGCCGCCACATGCTCCGCCACTG
CCTCACCCAGCCGGGAGACGGCCACTGCTTCGCGGCCAGCCGCGAGCGCG
CCGAGATCTTCTGCGCGCGGTGCTGCGAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1538:1456..4734-

>mRNA_E-fasciculatus_F_contig1538.3777.1 ID=mRNA_E-fasciculatus_F_contig1538.3777.1|Name=mRNA_E-fasciculatus_F_contig1538.3777.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1254bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1538:1456..4734- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTCAAGACAGCTCCAGGCAAGGCAACGCCGACCACTCCGAAGGCAGT
CGGCTCTGCGGGGAGATCGGCAGGAGCAGCCGCAGCCGCAGCAGCAGCAG
CAGCAGCGGCGGCGGCAGCAGAATCTTATGGTCAAGACAGCTCCAGGCAA
GGCAACGCCGACCACTCCGAAGGCAGTCGGCTCTGCGGGGAGATCGGCAG
GAGCAGCCGCAGCCGCAGCAGCAGCAGCAGCAGCGGCGGCGGCAGCAGAA
TCTTTGCGGACGTCAACAGCTGCTGCGCCTCCAAACAGCAGAACCAGCGG
TAGTTCTGGCAACCACGCAGGGGCAGCCTCCGCGCGAACAGTAGCAGGAG
GAGCGGCCACAGGTTCTTCTGCGGGTAGTGAACCTTCCAAGATGACGTGC
ACTTGTCCGCACCTTGTGGATCACCCTAACCGCCAGGATCTGCTGCGAAA
GCTGGTGGACGTGCGAATCGAGTGCGGACGTCAACAGCTGCTGCGCCTCC
AAACAGCAGAACCAGCGGTAGTTCTGGCAACCACGCAGGGGCAGCCTCCG
CGCGAACAGTAGCAGGAGGAGCGGCCACAGGTTCTTCTGCGGGTAGTGAA
CCTTCCAAGATGACGTGCACTTGTCCGCACCTTGTGGATCACCCTAACCG
CCAGGATCTGCTGCGAAAGCTGGTGGACGTGCGAATCGAGGTGAACACAG
CGCTCATCCTGAAGGAGAAGAAGACCGTGGGAGTGTTTGGAGCCATGGAC
GGGGAGGGTATGGGGCACCCGGACTCTTTGGTGAACACAGCGCTCATCCT
GAAGGAGAAGAAGACCGTGGGAGTGTTTGGAGCCATGGACGGGGAGGGTA
TGGGGCACCCGGACTCTTTGTGCAACGAGTGCGACGAGCACACCCTGCAC
GAGCCCGACGACGTCCTCACCTGCCTAGAGTGCGGCTACACCGCCTGCGG
GTCCCCGCCCCGCCGCCACATGCTCCGCCACTGCCTCACCCAGCCGGGAG
ACGGCCACTGCTTCGCGGCCAGCCGCGAGCGCGCCGAGATCTTCTGCGCG
CGGTGCTGCGACTGCAACGAGTGCGACGAGCACACCCTGCACGAGCCCGA
CGACGTCCTCACCTGCCTAGAGTGCGGCTACACCGCCTGCGGGTCCCCGC
CCCGCCGCCACATGCTCCGCCACTGCCTCACCCAGCCGGGAGACGGCCAC
TGCTTCGCGGCCAGCCGCGAGCGCGCCGAGATCTTCTGCGCGCGGTGCTG
CGAC
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