mRNA_E-fasciculatus_F_contig1529.3727.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1529.3727.1 vs. uniprot
Match: D7FQB7_ECTSI (UDG domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQB7_ECTSI) HSP 1 Score: 566 bits (1459), Expect = 4.000e-198 Identity = 290/326 (88.96%), Postives = 300/326 (92.02%), Query Frame = 3
Query: 135 MSLEQNGTNPFNEFALGASPSGSGPSSGVARARPAAARLLMDSQDSKPAKKIRTSVGAREQKTAKGLVEKYSRSPGEPEWPLRLIIIGHNPSDKAWELGHYYGNPSNRMWKLLSGAGIIPPGFTASNDQDCPITSGVGFTDVGFSIPGTVSSEFGKKELHSWRGGFYDRLTAHAERAAATVAASKSSPAEPATERGTDGTPAAGKGAEQGVATAATINAEVEDGYPSIITFAGKRQWEELFFDASAKDKAKTKGGKAGPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAMTNEAREAPYRNLGQHMLRSG-EWTRARRQQS 1109
MSLEQN NPFNEFALGASPSGSGP GV RARPAAARLLMDS DSKP KK+RTS GA+ Q TAKGLVEKY RSPGEPEWPLRLII+GHNPS+KAWELGHYYGNPSNRMWKLLS AGIIPPGFTASND+DCPITSGVGFTDVGFSIPGTVSSEFGKKELHSWR GFYDRLTAHAERAAATVAASKS PAEPATERGTD T AAGKGA+QGVATAATI A++EDG P II FAGKRQWEELFFDASAKDKAKTKGGK GPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAMTNEARE PYR+LGQHML+SG EWT R QQS
Sbjct: 1 MSLEQNDENPFNEFALGASPSGSGPIPGVTRARPAAARLLMDSLDSKPVKKMRTSTGAKGQSTAKGLVEKY-RSPGEPEWPLRLIIVGHNPSEKAWELGHYYGNPSNRMWKLLSSAGIIPPGFTASNDEDCPITSGVGFTDVGFSIPGTVSSEFGKKELHSWRRGFYDRLTAHAERAAATVAASKSYPAEPATERGTDSTSAAGKGADQGVATAATIKAKIEDGCPRIIAFAGKRQWEELFFDASAKDKAKTKGGKTGPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAMTNEARETPYRDLGQHMLKSGGEWTHRRGQQS 325
BLAST of mRNA_E-fasciculatus_F_contig1529.3727.1 vs. uniprot
Match: A0A4D9CYU0_9STRA (UDG domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYU0_9STRA) HSP 1 Score: 192 bits (488), Expect = 3.980e-53 Identity = 110/252 (43.65%), Postives = 136/252 (53.97%), Query Frame = 3
Query: 330 GLVEKYSRSPGEPEWPLRLIIIGHNPSDKAWELGHYYGNPSNRMWKLLSGAGIIPPGFTASNDQDCPITSGVGFTDVGFSIPGTVSSEFGKKELHSWRGGFYDRLTAHAERAAATVAASKSSPAEPATERGTDGTPAAGKGAEQGVATAATINAEVEDGYPSIITFAGKRQWEELFFDASAKDKAKTKGGKAGPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAMTNEAREAPYRNLGQHMLRSGEW 1085
GL EKY G+PE PLRL+++GHNPS AW GHYY NPSNRMW LL IIP G+TA +D CP T G+GFTD+G+ PGT S++F LH+WR Y RL +HA RA A P I+ F GKRQ+ ELFFD+ A K+ +GLQ A RP G+PF A T++FV+ SSSGAAAM+N ARE PY+ L Q +L+ W
Sbjct: 93 GLREKY----GDPERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNVKIIPEGYTAKDDDRCPSTCGIGFTDLGYGNPGTDSAKFKAPVLHAWRRSLYQRLLSHARRAGAP---------------------------------------------PKIVAFTGKRQFRELFFDSKAY--------KSISISYGLQSA--RPDGFPFNANETKLFVLTSSSGAAAMSNAAREMPYQELAQ-LLKQIPW 284
BLAST of mRNA_E-fasciculatus_F_contig1529.3727.1 vs. uniprot
Match: W7TJD2_9STRA (Uracil-dna glycosylase superfamily n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJD2_9STRA) HSP 1 Score: 192 bits (489), Expect = 4.470e-52 Identity = 110/252 (43.65%), Postives = 136/252 (53.97%), Query Frame = 3
Query: 330 GLVEKYSRSPGEPEWPLRLIIIGHNPSDKAWELGHYYGNPSNRMWKLLSGAGIIPPGFTASNDQDCPITSGVGFTDVGFSIPGTVSSEFGKKELHSWRGGFYDRLTAHAERAAATVAASKSSPAEPATERGTDGTPAAGKGAEQGVATAATINAEVEDGYPSIITFAGKRQWEELFFDASAKDKAKTKGGKAGPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAMTNEAREAPYRNLGQHMLRSGEW 1085
GL EKY G+PE PLRL+++GHNPS AW GHYY NPSNRMW LL IIP G+TA +D CP T G+GFTD+G+ PGT SS F LH+WR Y RL +HA RA A P I+ F GKRQ+ ELFFD+ A K+ +GLQ A RP G+PF A+ T++FV+ SSSGAAAM+N ARE PY+ L + +L+ W
Sbjct: 196 GLREKY----GDPERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNVKIIPEGYTAKDDDRCPSTCGIGFTDLGYGNPGTDSSNFKAPVLHAWRRSLYQRLLSHARRAGAP---------------------------------------------PKIVAFTGKRQFRELFFDSKAY--------KSISISYGLQSA--RPDGFPFNADETKLFVLTSSSGAAAMSNAAREMPYQELAE-LLKQIPW 387
BLAST of mRNA_E-fasciculatus_F_contig1529.3727.1 vs. uniprot
Match: A0A383VAW5_TETOB (UDG domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VAW5_TETOB) HSP 1 Score: 181 bits (460), Expect = 1.630e-48 Identity = 103/250 (41.20%), Postives = 130/250 (52.00%), Query Frame = 3
Query: 324 AKGLVEKYSRSPGEPEWPLRLIIIGHNPSDKAWELGHYYGNPSNRMWKLLSGAGIIPPGFTASNDQDC-PITSGVGFTDVGFSIPGTVSSEFGKKELHSWRGGFYDRLTAHAERAAATVAASKSSPAEPATERGTDGTPAAGKGAEQGVATAATINAEVEDGYPSIITFAGKRQWEELF-FDASAKDKAKTKGGKAGPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAMTNEAREAPYRNLGQHM 1067
+KGL EK + PLRLI+IGHNPS+ AW GHYY NPSNRMW++L AGI PPG + D P GVGFTDVG PGT SS F + WR FY RL AH + A+ ++ S G P ++ F GKR + EL DAS + + + GLQP PPGWP PA++TE++V+ S+SGAA M+N+AREAPYR L Q +
Sbjct: 114 SKGLPEKLGAA------PLRLILIGHNPSEHAWHTGHYYSNPSNRMWRILESAGITPPGVSGPEADDVMPAAVGVGFTDVGSGQPGTDSSLFTAADFQGWRAAFYARLAAHMKAASDSIGCSCG-----------------------------------RCGAPRLVAFTGKRHYLELLNLDASGQQRRGKDRVASAAVTLGLQPQQQLPPGWPLPADKTEVWVLTSTSGAAPMSNQAREAPYRQLAQRL 322
BLAST of mRNA_E-fasciculatus_F_contig1529.3727.1 vs. uniprot
Match: A0A5J4XIV9_9CHLO (DNA glycosylase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XIV9_9CHLO) HSP 1 Score: 169 bits (427), Expect = 4.740e-44 Identity = 97/244 (39.75%), Postives = 129/244 (52.87%), Query Frame = 3
Query: 354 SPGEPE----WPLRLIIIGHNPSDKAWELGHYYGNPSNRMWKLLSGAGIIPPGFTASNDQDCPIT-SGVGFTDVGFSIPGTVSSEFGKKELHSWRGGFYDRLTAHAERAAATVAASKSSPAEPATERGTDGTPAAGKGAEQGVATAATINAEVEDGYPSIITFAGKRQWEELFFDASAKDKAKTKGGKAGPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAMTNEAREAPYRNLGQHML 1070
+PG PE PLRLII+GHNPSD AW GHYY NPSN MW++L I P T DC + +GVGFTDVG IPGT+SS+F W GFY+RL+AH RA+ ++ + GK G P+++ F+GKRQW EL + K K K +F P ++RP GWP P + TE++V+ S+SGA+ MT EAR AP+ L + ++
Sbjct: 106 APGVPEKLGDHPLRLIIVGHNPSDHAWRTGHYYSNPSNWMWRILIATRIAPSHVTGPQHDDCMASDAGVGFTDVGSGIPGTISSQFDSATFQGWGAGFYERLSAHMSRASDSIGCT------------------CGK-----------------CGAPALVAFSGKRQWSELI-NTGRKGKNKLT-------KFATGPQNMRPEGWPLP-DSTEVWVMTSTSGASPMTTEARMAPWHELSKQLM 305
BLAST of mRNA_E-fasciculatus_F_contig1529.3727.1 vs. uniprot
Match: A0A150H3T8_GONPE (UDG domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H3T8_GONPE) HSP 1 Score: 166 bits (421), Expect = 1.080e-43 Identity = 101/241 (41.91%), Postives = 126/241 (52.28%), Query Frame = 3
Query: 375 PLRLIIIGHNPSDKAWELGHYYGNPSNRMWKLLSGAGIIPPGFTASNDQD-CPITSGVGFTDVGFSIPGTVSSEFGKKELHSWRGGFYDRLTAHAERAAATVAASKSSPAEPATERGTDGTPAAGKGAEQGVATAATINAEVEDGYPSIITFAGKRQWEELF-FDASAKDKAKTKGGKAGPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAMTNEAREAPYRNLGQHMLRSGEWTR 1091
PLRL+I+GHNPS+ AW+ GHYY NPSN MW++L GI PPG + D D P +GVGF DVG PGT SS F + +W FY RL AH RAAA++ G G+ G P ++ F+GKRQ+ EL S +D+AKT FG P P GWPFP TE++V S+SGAAAMT E RE PY+ L + + R EW R
Sbjct: 49 PLRLVIVGHNPSEHAWQSGHYYSNPSNLMWRILISTGIAPPGTRGAEDDDRLPREAGVGFLDVGCGHPGTDSSSFASEVFDAWSRAFYSRLKAHMARAAASI------------------------GCTCGLC-----------GAPRLVAFSGKRQFLELLNVGRSGRDRAKT-------VEFG--PQSELPRGWPFPRS-TEVWVCSSTSGAAAMTKEQREGPYKRLAERLARE-EWPR 243
BLAST of mRNA_E-fasciculatus_F_contig1529.3727.1 vs. uniprot
Match: A0A836CAH3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAH3_9STRA) HSP 1 Score: 166 bits (421), Expect = 1.360e-42 Identity = 108/275 (39.27%), Postives = 131/275 (47.64%), Query Frame = 3
Query: 330 GLVEKYSRSPGEPEWPLRLIIIGHNPSDKAWELGHYYGNPSNRMWKLLSGAGIIPPGFTASNDQDCPITSGVGFTDVGFSIPGTVSSEFGKKELHSWRGGFYDRLTAHAERAAATVAASKSSPAEPATERGTDGTPAAGKGAEQGVATAAT-------------INAEVED--------GYPSIITFAGKRQWEELFFDASAKDKAKTKGGKAGPFRFGLQPADLRPPGWPFPAERTEMFVV--PSSSGAAAMTNEAREAPYRNLGQHMLRSGEW 1085
GL EK RSPG PEWPLR + +GHNPS AW GH+Y +PSN MW+LL AG+ P T +D+ PI GVGFTD+G PGT S+ F + L +WR G ++RL H RA + E+ED GYP +I F GKRQW ELFF + K +GLQ A RPP WPFP VV SSSGA+A++NEAR APYR L +LR W
Sbjct: 99 GLPEKL-RSPGHPEWPLRCVCVGHNPSATAWAKGHFYAHPSNHMWRLLHAAGVSPRPLTCVDDERLPIELGVGFTDLGHDCPGTNSAAFKRDVLRTWRAGLFERLRGHVRRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKLEMEDAAAAPERLGYPHVIAFTGKRQWRELFFGTPEAEALAKK------VDYGLQQA--RPPDWPFPPPPNGPLVVVLASSSGASALSNEARIAPYRLLA-GLLRDVRW 363
BLAST of mRNA_E-fasciculatus_F_contig1529.3727.1 vs. uniprot
Match: A0A8J4AKJ5_9CHLO (Uncharacterized protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AKJ5_9CHLO) HSP 1 Score: 168 bits (425), Expect = 1.640e-41 Identity = 99/240 (41.25%), Postives = 127/240 (52.92%), Query Frame = 3
Query: 375 PLRLIIIGHNPSDKAWELGHYYGNPSNRMWKLLSGAGIIPPGFTASNDQD-CPITSGVGFTDVGFSIPGTVSSEFGKKELHSWRGGFYDRLTAHAERAAATVAASKSSPAEPATERGTDGTPAAGKGAEQGVATAATINAEVEDGYPSIITFAGKRQWEELFFDASAKDKAKTKGGKAGPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAMTNEAREAPYRNLGQHMLRSGEWTR 1091
PLRL+I+GHNPS AW+ GHYY +P+N MW+LL GI PPG ++ D D P +GVGF DVG PGT SS F + SW FY RL H +RA+A++ G G+ G PS++ F+GKR + EL + K + K + GP + L P GWPFPA TE++V S+SGAAA+T E REAPYR L + M R EW R
Sbjct: 328 PLRLVIVGHNPSAHAWQSGHYYSHPANHMWRLLIATGIAPPGTRSAEDDDRLPAAAGVGFLDVGCGHPGTDSSSFSSEVFKSWSQAFYARLKGHMDRASASI------------------------GCSCGLC-----------GAPSLVAFSGKRHYLELL-NVGKPPKERVKTVEHGPQK-------LLPAGWPFPAAATEVWVCSSTSGAAALTREQREAPYRRLAEKM-REIEWPR 523
BLAST of mRNA_E-fasciculatus_F_contig1529.3727.1 vs. uniprot
Match: A0A8J4FEP7_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FEP7_9CHLO) HSP 1 Score: 162 bits (410), Expect = 8.410e-40 Identity = 96/240 (40.00%), Postives = 126/240 (52.50%), Query Frame = 3
Query: 375 PLRLIIIGHNPSDKAWELGHYYGNPSNRMWKLLSGAGIIPPGFTASNDQD-CPITSGVGFTDVGFSIPGTVSSEFGKKELHSWRGGFYDRLTAHAERAAATVAASKSSPAEPATERGTDGTPAAGKGAEQGVATAATINAEVEDGYPSIITFAGKRQWEELFFDASAKDKAKTKGGKAGPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAMTNEAREAPYRNLGQHMLRSGEWTR 1091
PLRL+I+GHNPS AW+ GHYY +P+N MW+LL GI PPG ++ D D P +GVGF DVG PGT S+ F + SW FY +L AH RA+A++ G G+ G PS++ F+GKR + EL + + + K + GP L P GWPFPA TE++V S+SGAAA+T E R+APYR L + LR EW R
Sbjct: 260 PLRLVIVGHNPSAHAWQSGHYYSHPANHMWRLLIATGIAPPGTRSAEDDDRLPAAAGVGFLDVGCGHPGTDSASFSSEVFKSWSQVFYAQLKAHMGRASASI------------------------GCSCGLC-----------GAPSLVAFSGKRHYLELL-NVDKAPRERVKSVEHGP-------QQLLPGGWPFPATTTEVWVCSSTSGAAALTREQRQAPYRQLAEK-LRGIEWPR 455
BLAST of mRNA_E-fasciculatus_F_contig1529.3727.1 vs. uniprot
Match: A8IDF6_CHLRE (Predicted protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8IDF6_CHLRE) HSP 1 Score: 157 bits (398), Expect = 8.710e-40 Identity = 104/264 (39.39%), Postives = 127/264 (48.11%), Query Frame = 3
Query: 303 GAREQKTAKG-LVEKYSRSPGEPEW----PLRLIIIGHNPSDKAWELGHYYGNPSNRMWKLLSGAGIIPPGFTASNDQD--CPITSGVGFTDVGFSIPGTVSSEFGKKELHSWRGGFYDRLTAHAERAAATVAASKSSPAEPATERGTDGTPAAGKGAEQGVATAATINAEVEDGYPSIITFAGKRQWEELFFDAS--AKDKAKTKGGKAGPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAMTNEAREAPYRNLGQHM 1067
G KTAK + +PG PE PLRL+I+GHNPS+ AW GHYY NPSN +W LL GI PP D P +GVGF DVG +PGT SS F + W GFY RL AH RAA ++ G G+ G P ++ F GKRQ+ EL + A++K KT FG Q A PPGWP P TE++V S+SGAA MT EARE PY L + +
Sbjct: 98 GGSRSKTAKSDSIPSLDSAPGVPEKLGDDPLRLVIVGHNPSEHAWRSGHYYSNPSNHLWPLLRRTGIAPPDRIRGPQDDGLMPAVAGVGFLDVGCGVPGTDSSRFKSEVFEGWSRGFYSRLRAHMRRAATSI------------------------GCRCGLC-----------GAPRLVAFTGKRQYLELMNVGAGPARNKVKT-------VEFGRQAA--LPPGWPLPPS-TEVWVCTSTSGAAPMTREAREQPYVQLAERL 316 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1529.3727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1529.3727.1 >prot_E-fasciculatus_F_contig1529.3727.1 ID=prot_E-fasciculatus_F_contig1529.3727.1|Name=mRNA_E-fasciculatus_F_contig1529.3727.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=378bp MPRHVGPAAIPVLLVLFWCFHVVVSFLTVPQPSFRMSLEQNGTNPFNEFAback to top mRNA from alignment at E-fasciculatus_F_contig1529:11863..14659+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1529.3727.1 ID=mRNA_E-fasciculatus_F_contig1529.3727.1|Name=mRNA_E-fasciculatus_F_contig1529.3727.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2797bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1529:11863..14659+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1529:11863..14659+ >mRNA_E-fasciculatus_F_contig1529.3727.1 ID=mRNA_E-fasciculatus_F_contig1529.3727.1|Name=mRNA_E-fasciculatus_F_contig1529.3727.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2268bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1529:11863..14659+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |