mRNA_E-fasciculatus_F_contig1529.3727.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1529.3727.1
Unique NamemRNA_E-fasciculatus_F_contig1529.3727.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1529.3727.1 vs. uniprot
Match: D7FQB7_ECTSI (UDG domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQB7_ECTSI)

HSP 1 Score: 566 bits (1459), Expect = 4.000e-198
Identity = 290/326 (88.96%), Postives = 300/326 (92.02%), Query Frame = 3
Query:  135 MSLEQNGTNPFNEFALGASPSGSGPSSGVARARPAAARLLMDSQDSKPAKKIRTSVGAREQKTAKGLVEKYSRSPGEPEWPLRLIIIGHNPSDKAWELGHYYGNPSNRMWKLLSGAGIIPPGFTASNDQDCPITSGVGFTDVGFSIPGTVSSEFGKKELHSWRGGFYDRLTAHAERAAATVAASKSSPAEPATERGTDGTPAAGKGAEQGVATAATINAEVEDGYPSIITFAGKRQWEELFFDASAKDKAKTKGGKAGPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAMTNEAREAPYRNLGQHMLRSG-EWTRARRQQS 1109
            MSLEQN  NPFNEFALGASPSGSGP  GV RARPAAARLLMDS DSKP KK+RTS GA+ Q TAKGLVEKY RSPGEPEWPLRLII+GHNPS+KAWELGHYYGNPSNRMWKLLS AGIIPPGFTASND+DCPITSGVGFTDVGFSIPGTVSSEFGKKELHSWR GFYDRLTAHAERAAATVAASKS PAEPATERGTD T AAGKGA+QGVATAATI A++EDG P II FAGKRQWEELFFDASAKDKAKTKGGK GPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAMTNEARE PYR+LGQHML+SG EWT  R QQS
Sbjct:    1 MSLEQNDENPFNEFALGASPSGSGPIPGVTRARPAAARLLMDSLDSKPVKKMRTSTGAKGQSTAKGLVEKY-RSPGEPEWPLRLIIVGHNPSEKAWELGHYYGNPSNRMWKLLSSAGIIPPGFTASNDEDCPITSGVGFTDVGFSIPGTVSSEFGKKELHSWRRGFYDRLTAHAERAAATVAASKSYPAEPATERGTDSTSAAGKGADQGVATAATIKAKIEDGCPRIIAFAGKRQWEELFFDASAKDKAKTKGGKTGPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAMTNEARETPYRDLGQHMLKSGGEWTHRRGQQS 325          
BLAST of mRNA_E-fasciculatus_F_contig1529.3727.1 vs. uniprot
Match: A0A4D9CYU0_9STRA (UDG domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYU0_9STRA)

HSP 1 Score: 192 bits (488), Expect = 3.980e-53
Identity = 110/252 (43.65%), Postives = 136/252 (53.97%), Query Frame = 3
Query:  330 GLVEKYSRSPGEPEWPLRLIIIGHNPSDKAWELGHYYGNPSNRMWKLLSGAGIIPPGFTASNDQDCPITSGVGFTDVGFSIPGTVSSEFGKKELHSWRGGFYDRLTAHAERAAATVAASKSSPAEPATERGTDGTPAAGKGAEQGVATAATINAEVEDGYPSIITFAGKRQWEELFFDASAKDKAKTKGGKAGPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAMTNEAREAPYRNLGQHMLRSGEW 1085
            GL EKY    G+PE PLRL+++GHNPS  AW  GHYY NPSNRMW LL    IIP G+TA +D  CP T G+GFTD+G+  PGT S++F    LH+WR   Y RL +HA RA A                                              P I+ F GKRQ+ ELFFD+ A         K+    +GLQ A  RP G+PF A  T++FV+ SSSGAAAM+N ARE PY+ L Q +L+   W
Sbjct:   93 GLREKY----GDPERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNVKIIPEGYTAKDDDRCPSTCGIGFTDLGYGNPGTDSAKFKAPVLHAWRRSLYQRLLSHARRAGAP---------------------------------------------PKIVAFTGKRQFRELFFDSKAY--------KSISISYGLQSA--RPDGFPFNANETKLFVLTSSSGAAAMSNAAREMPYQELAQ-LLKQIPW 284          
BLAST of mRNA_E-fasciculatus_F_contig1529.3727.1 vs. uniprot
Match: W7TJD2_9STRA (Uracil-dna glycosylase superfamily n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJD2_9STRA)

HSP 1 Score: 192 bits (489), Expect = 4.470e-52
Identity = 110/252 (43.65%), Postives = 136/252 (53.97%), Query Frame = 3
Query:  330 GLVEKYSRSPGEPEWPLRLIIIGHNPSDKAWELGHYYGNPSNRMWKLLSGAGIIPPGFTASNDQDCPITSGVGFTDVGFSIPGTVSSEFGKKELHSWRGGFYDRLTAHAERAAATVAASKSSPAEPATERGTDGTPAAGKGAEQGVATAATINAEVEDGYPSIITFAGKRQWEELFFDASAKDKAKTKGGKAGPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAMTNEAREAPYRNLGQHMLRSGEW 1085
            GL EKY    G+PE PLRL+++GHNPS  AW  GHYY NPSNRMW LL    IIP G+TA +D  CP T G+GFTD+G+  PGT SS F    LH+WR   Y RL +HA RA A                                              P I+ F GKRQ+ ELFFD+ A         K+    +GLQ A  RP G+PF A+ T++FV+ SSSGAAAM+N ARE PY+ L + +L+   W
Sbjct:  196 GLREKY----GDPERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNVKIIPEGYTAKDDDRCPSTCGIGFTDLGYGNPGTDSSNFKAPVLHAWRRSLYQRLLSHARRAGAP---------------------------------------------PKIVAFTGKRQFRELFFDSKAY--------KSISISYGLQSA--RPDGFPFNADETKLFVLTSSSGAAAMSNAAREMPYQELAE-LLKQIPW 387          
BLAST of mRNA_E-fasciculatus_F_contig1529.3727.1 vs. uniprot
Match: A0A383VAW5_TETOB (UDG domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VAW5_TETOB)

HSP 1 Score: 181 bits (460), Expect = 1.630e-48
Identity = 103/250 (41.20%), Postives = 130/250 (52.00%), Query Frame = 3
Query:  324 AKGLVEKYSRSPGEPEWPLRLIIIGHNPSDKAWELGHYYGNPSNRMWKLLSGAGIIPPGFTASNDQDC-PITSGVGFTDVGFSIPGTVSSEFGKKELHSWRGGFYDRLTAHAERAAATVAASKSSPAEPATERGTDGTPAAGKGAEQGVATAATINAEVEDGYPSIITFAGKRQWEELF-FDASAKDKAKTKGGKAGPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAMTNEAREAPYRNLGQHM 1067
            +KGL EK   +      PLRLI+IGHNPS+ AW  GHYY NPSNRMW++L  AGI PPG +     D  P   GVGFTDVG   PGT SS F   +   WR  FY RL AH + A+ ++  S                                       G P ++ F GKR + EL   DAS + +       +     GLQP    PPGWP PA++TE++V+ S+SGAA M+N+AREAPYR L Q +
Sbjct:  114 SKGLPEKLGAA------PLRLILIGHNPSEHAWHTGHYYSNPSNRMWRILESAGITPPGVSGPEADDVMPAAVGVGFTDVGSGQPGTDSSLFTAADFQGWRAAFYARLAAHMKAASDSIGCSCG-----------------------------------RCGAPRLVAFTGKRHYLELLNLDASGQQRRGKDRVASAAVTLGLQPQQQLPPGWPLPADKTEVWVLTSTSGAAPMSNQAREAPYRQLAQRL 322          
BLAST of mRNA_E-fasciculatus_F_contig1529.3727.1 vs. uniprot
Match: A0A5J4XIV9_9CHLO (DNA glycosylase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XIV9_9CHLO)

HSP 1 Score: 169 bits (427), Expect = 4.740e-44
Identity = 97/244 (39.75%), Postives = 129/244 (52.87%), Query Frame = 3
Query:  354 SPGEPE----WPLRLIIIGHNPSDKAWELGHYYGNPSNRMWKLLSGAGIIPPGFTASNDQDCPIT-SGVGFTDVGFSIPGTVSSEFGKKELHSWRGGFYDRLTAHAERAAATVAASKSSPAEPATERGTDGTPAAGKGAEQGVATAATINAEVEDGYPSIITFAGKRQWEELFFDASAKDKAKTKGGKAGPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAMTNEAREAPYRNLGQHML 1070
            +PG PE     PLRLII+GHNPSD AW  GHYY NPSN MW++L    I P   T     DC  + +GVGFTDVG  IPGT+SS+F       W  GFY+RL+AH  RA+ ++  +                   GK                  G P+++ F+GKRQW EL  +   K K K         +F   P ++RP GWP P + TE++V+ S+SGA+ MT EAR AP+  L + ++
Sbjct:  106 APGVPEKLGDHPLRLIIVGHNPSDHAWRTGHYYSNPSNWMWRILIATRIAPSHVTGPQHDDCMASDAGVGFTDVGSGIPGTISSQFDSATFQGWGAGFYERLSAHMSRASDSIGCT------------------CGK-----------------CGAPALVAFSGKRQWSELI-NTGRKGKNKLT-------KFATGPQNMRPEGWPLP-DSTEVWVMTSTSGASPMTTEARMAPWHELSKQLM 305          
BLAST of mRNA_E-fasciculatus_F_contig1529.3727.1 vs. uniprot
Match: A0A150H3T8_GONPE (UDG domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H3T8_GONPE)

HSP 1 Score: 166 bits (421), Expect = 1.080e-43
Identity = 101/241 (41.91%), Postives = 126/241 (52.28%), Query Frame = 3
Query:  375 PLRLIIIGHNPSDKAWELGHYYGNPSNRMWKLLSGAGIIPPGFTASNDQD-CPITSGVGFTDVGFSIPGTVSSEFGKKELHSWRGGFYDRLTAHAERAAATVAASKSSPAEPATERGTDGTPAAGKGAEQGVATAATINAEVEDGYPSIITFAGKRQWEELF-FDASAKDKAKTKGGKAGPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAMTNEAREAPYRNLGQHMLRSGEWTR 1091
            PLRL+I+GHNPS+ AW+ GHYY NPSN MW++L   GI PPG   + D D  P  +GVGF DVG   PGT SS F  +   +W   FY RL AH  RAAA++                        G   G+            G P ++ F+GKRQ+ EL     S +D+AKT         FG  P    P GWPFP   TE++V  S+SGAAAMT E RE PY+ L + + R  EW R
Sbjct:   49 PLRLVIVGHNPSEHAWQSGHYYSNPSNLMWRILISTGIAPPGTRGAEDDDRLPREAGVGFLDVGCGHPGTDSSSFASEVFDAWSRAFYSRLKAHMARAAASI------------------------GCTCGLC-----------GAPRLVAFSGKRQFLELLNVGRSGRDRAKT-------VEFG--PQSELPRGWPFPRS-TEVWVCSSTSGAAAMTKEQREGPYKRLAERLARE-EWPR 243          
BLAST of mRNA_E-fasciculatus_F_contig1529.3727.1 vs. uniprot
Match: A0A836CAH3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAH3_9STRA)

HSP 1 Score: 166 bits (421), Expect = 1.360e-42
Identity = 108/275 (39.27%), Postives = 131/275 (47.64%), Query Frame = 3
Query:  330 GLVEKYSRSPGEPEWPLRLIIIGHNPSDKAWELGHYYGNPSNRMWKLLSGAGIIPPGFTASNDQDCPITSGVGFTDVGFSIPGTVSSEFGKKELHSWRGGFYDRLTAHAERAAATVAASKSSPAEPATERGTDGTPAAGKGAEQGVATAAT-------------INAEVED--------GYPSIITFAGKRQWEELFFDASAKDKAKTKGGKAGPFRFGLQPADLRPPGWPFPAERTEMFVV--PSSSGAAAMTNEAREAPYRNLGQHMLRSGEW 1085
            GL EK  RSPG PEWPLR + +GHNPS  AW  GH+Y +PSN MW+LL  AG+ P   T  +D+  PI  GVGFTD+G   PGT S+ F +  L +WR G ++RL  H  RA                                                    +  E+ED        GYP +I F GKRQW ELFF     +    K        +GLQ A  RPP WPFP       VV   SSSGA+A++NEAR APYR L   +LR   W
Sbjct:   99 GLPEKL-RSPGHPEWPLRCVCVGHNPSATAWAKGHFYAHPSNHMWRLLHAAGVSPRPLTCVDDERLPIELGVGFTDLGHDCPGTNSAAFKRDVLRTWRAGLFERLRGHVRRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKLEMEDAAAAPERLGYPHVIAFTGKRQWRELFFGTPEAEALAKK------VDYGLQQA--RPPDWPFPPPPNGPLVVVLASSSGASALSNEARIAPYRLLA-GLLRDVRW 363          
BLAST of mRNA_E-fasciculatus_F_contig1529.3727.1 vs. uniprot
Match: A0A8J4AKJ5_9CHLO (Uncharacterized protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AKJ5_9CHLO)

HSP 1 Score: 168 bits (425), Expect = 1.640e-41
Identity = 99/240 (41.25%), Postives = 127/240 (52.92%), Query Frame = 3
Query:  375 PLRLIIIGHNPSDKAWELGHYYGNPSNRMWKLLSGAGIIPPGFTASNDQD-CPITSGVGFTDVGFSIPGTVSSEFGKKELHSWRGGFYDRLTAHAERAAATVAASKSSPAEPATERGTDGTPAAGKGAEQGVATAATINAEVEDGYPSIITFAGKRQWEELFFDASAKDKAKTKGGKAGPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAMTNEAREAPYRNLGQHMLRSGEWTR 1091
            PLRL+I+GHNPS  AW+ GHYY +P+N MW+LL   GI PPG  ++ D D  P  +GVGF DVG   PGT SS F  +   SW   FY RL  H +RA+A++                        G   G+            G PS++ F+GKR + EL  +     K + K  + GP +       L P GWPFPA  TE++V  S+SGAAA+T E REAPYR L + M R  EW R
Sbjct:  328 PLRLVIVGHNPSAHAWQSGHYYSHPANHMWRLLIATGIAPPGTRSAEDDDRLPAAAGVGFLDVGCGHPGTDSSSFSSEVFKSWSQAFYARLKGHMDRASASI------------------------GCSCGLC-----------GAPSLVAFSGKRHYLELL-NVGKPPKERVKTVEHGPQK-------LLPAGWPFPAAATEVWVCSSTSGAAALTREQREAPYRRLAEKM-REIEWPR 523          
BLAST of mRNA_E-fasciculatus_F_contig1529.3727.1 vs. uniprot
Match: A0A8J4FEP7_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FEP7_9CHLO)

HSP 1 Score: 162 bits (410), Expect = 8.410e-40
Identity = 96/240 (40.00%), Postives = 126/240 (52.50%), Query Frame = 3
Query:  375 PLRLIIIGHNPSDKAWELGHYYGNPSNRMWKLLSGAGIIPPGFTASNDQD-CPITSGVGFTDVGFSIPGTVSSEFGKKELHSWRGGFYDRLTAHAERAAATVAASKSSPAEPATERGTDGTPAAGKGAEQGVATAATINAEVEDGYPSIITFAGKRQWEELFFDASAKDKAKTKGGKAGPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAMTNEAREAPYRNLGQHMLRSGEWTR 1091
            PLRL+I+GHNPS  AW+ GHYY +P+N MW+LL   GI PPG  ++ D D  P  +GVGF DVG   PGT S+ F  +   SW   FY +L AH  RA+A++                        G   G+            G PS++ F+GKR + EL  +     + + K  + GP         L P GWPFPA  TE++V  S+SGAAA+T E R+APYR L +  LR  EW R
Sbjct:  260 PLRLVIVGHNPSAHAWQSGHYYSHPANHMWRLLIATGIAPPGTRSAEDDDRLPAAAGVGFLDVGCGHPGTDSASFSSEVFKSWSQVFYAQLKAHMGRASASI------------------------GCSCGLC-----------GAPSLVAFSGKRHYLELL-NVDKAPRERVKSVEHGP-------QQLLPGGWPFPATTTEVWVCSSTSGAAALTREQRQAPYRQLAEK-LRGIEWPR 455          
BLAST of mRNA_E-fasciculatus_F_contig1529.3727.1 vs. uniprot
Match: A8IDF6_CHLRE (Predicted protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8IDF6_CHLRE)

HSP 1 Score: 157 bits (398), Expect = 8.710e-40
Identity = 104/264 (39.39%), Postives = 127/264 (48.11%), Query Frame = 3
Query:  303 GAREQKTAKG-LVEKYSRSPGEPEW----PLRLIIIGHNPSDKAWELGHYYGNPSNRMWKLLSGAGIIPPGFTASNDQD--CPITSGVGFTDVGFSIPGTVSSEFGKKELHSWRGGFYDRLTAHAERAAATVAASKSSPAEPATERGTDGTPAAGKGAEQGVATAATINAEVEDGYPSIITFAGKRQWEELFFDAS--AKDKAKTKGGKAGPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAMTNEAREAPYRNLGQHM 1067
            G    KTAK   +     +PG PE     PLRL+I+GHNPS+ AW  GHYY NPSN +W LL   GI PP        D   P  +GVGF DVG  +PGT SS F  +    W  GFY RL AH  RAA ++                        G   G+            G P ++ F GKRQ+ EL    +  A++K KT         FG Q A   PPGWP P   TE++V  S+SGAA MT EARE PY  L + +
Sbjct:   98 GGSRSKTAKSDSIPSLDSAPGVPEKLGDDPLRLVIVGHNPSEHAWRSGHYYSNPSNHLWPLLRRTGIAPPDRIRGPQDDGLMPAVAGVGFLDVGCGVPGTDSSRFKSEVFEGWSRGFYSRLRAHMRRAATSI------------------------GCRCGLC-----------GAPRLVAFTGKRQYLELMNVGAGPARNKVKT-------VEFGRQAA--LPPGWPLPPS-TEVWVCTSTSGAAPMTREAREQPYVQLAERL 316          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1529.3727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQB7_ECTSI4.000e-19888.96UDG domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A4D9CYU0_9STRA3.980e-5343.65UDG domain-containing protein n=1 Tax=Nannochlorop... [more]
W7TJD2_9STRA4.470e-5243.65Uracil-dna glycosylase superfamily n=1 Tax=Nannoch... [more]
A0A383VAW5_TETOB1.630e-4841.20UDG domain-containing protein n=1 Tax=Tetradesmus ... [more]
A0A5J4XIV9_9CHLO4.740e-4439.75DNA glycosylase n=1 Tax=Trebouxia sp. A1-2 TaxID=2... [more]
A0A150H3T8_GONPE1.080e-4341.91UDG domain-containing protein n=1 Tax=Gonium pecto... [more]
A0A836CAH3_9STRA1.360e-4239.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J4AKJ5_9CHLO1.640e-4141.25Uncharacterized protein n=2 Tax=Volvox africanus T... [more]
A0A8J4FEP7_9CHLO8.410e-4040.00Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
A8IDF6_CHLRE8.710e-4039.39Predicted protein n=1 Tax=Chlamydomonas reinhardti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1529contigE-fasciculatus_F_contig1529:11863..14659 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score571.2
Seed ortholog evalue3.5e-160
Seed eggNOG ortholog2880.D7FQB7
KEGG koko:K20813
KEGG Pathwayko03410,map03410
EggNOG OGs2CGCP@1,2RYQ9@2759
EC3.2.2.29
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionUracil-DNA glycosylase-like
Ec32 orthologEc-01_006710.1
Exons4
Model size1739
Cds size1134
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1529.3727.1prot_E-fasciculatus_F_contig1529.3727.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1529 11892..14083 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928008.869868-UTR-E-fasciculatus_F_contig1529:11862..118911622928008.869868-UTR-E-fasciculatus_F_contig1529:11862..11891Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1529 11863..11891 +
1695995786.923479-UTR-E-fasciculatus_F_contig1529:11862..118911695995786.923479-UTR-E-fasciculatus_F_contig1529:11862..11891Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1529 11863..11891 +
1622928008.9511147-UTR-E-fasciculatus_F_contig1529:14083..146591622928008.9511147-UTR-E-fasciculatus_F_contig1529:14083..14659Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1529 14084..14659 +
1695995786.978949-UTR-E-fasciculatus_F_contig1529:14083..146591695995786.978949-UTR-E-fasciculatus_F_contig1529:14083..14659Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1529 14084..14659 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928008.8877327-CDS-E-fasciculatus_F_contig1529:11891..122111622928008.8877327-CDS-E-fasciculatus_F_contig1529:11891..12211Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1529 11892..12211 +
1695995786.9335022-CDS-E-fasciculatus_F_contig1529:11891..122111695995786.9335022-CDS-E-fasciculatus_F_contig1529:11891..12211Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1529 11892..12211 +
1622928008.9057734-CDS-E-fasciculatus_F_contig1529:12591..128021622928008.9057734-CDS-E-fasciculatus_F_contig1529:12591..12802Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1529 12592..12802 +
1695995786.9416323-CDS-E-fasciculatus_F_contig1529:12591..128021695995786.9416323-CDS-E-fasciculatus_F_contig1529:12591..12802Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1529 12592..12802 +
1622928008.9253366-CDS-E-fasciculatus_F_contig1529:13184..134661622928008.9253366-CDS-E-fasciculatus_F_contig1529:13184..13466Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1529 13185..13466 +
1695995786.9520965-CDS-E-fasciculatus_F_contig1529:13184..134661695995786.9520965-CDS-E-fasciculatus_F_contig1529:13184..13466Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1529 13185..13466 +
1622928008.9396734-CDS-E-fasciculatus_F_contig1529:13762..140831622928008.9396734-CDS-E-fasciculatus_F_contig1529:13762..14083Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1529 13763..14083 +
1695995786.9686842-CDS-E-fasciculatus_F_contig1529:13762..140831695995786.9686842-CDS-E-fasciculatus_F_contig1529:13762..14083Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1529 13763..14083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1529.3727.1

>prot_E-fasciculatus_F_contig1529.3727.1 ID=prot_E-fasciculatus_F_contig1529.3727.1|Name=mRNA_E-fasciculatus_F_contig1529.3727.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=378bp
MPRHVGPAAIPVLLVLFWCFHVVVSFLTVPQPSFRMSLEQNGTNPFNEFA
LGASPSGSGPSSGVARARPAAARLLMDSQDSKPAKKIRTSVGAREQKTAK
GLVEKYSRSPGEPEWPLRLIIIGHNPSDKAWELGHYYGNPSNRMWKLLSG
AGIIPPGFTASNDQDCPITSGVGFTDVGFSIPGTVSSEFGKKELHSWRGG
FYDRLTAHAERAAATVAASKSSPAEPATERGTDGTPAAGKGAEQGVATAA
TINAEVEDGYPSIITFAGKRQWEELFFDASAKDKAKTKGGKAGPFRFGLQ
PADLRPPGWPFPAERTEMFVVPSSSGAAAMTNEAREAPYRNLGQHMLRSG
EWTRARRQQSGGGTSCGENGATVPQQR*
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mRNA from alignment at E-fasciculatus_F_contig1529:11863..14659+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1529.3727.1 ID=mRNA_E-fasciculatus_F_contig1529.3727.1|Name=mRNA_E-fasciculatus_F_contig1529.3727.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2797bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1529:11863..14659+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCGTCGAGCCAGCACAGATGTTCATTGAATGCCACGACACGTGGGCCCT GCCGCTATCCCTGTGTTGCTGGTGCTGTTCTGGTGTTTTCACGTAGTTGT TTCCTTTCTAACCGTACCGCAACCATCTTTTAGGATGAGTTTGGAGCAGA ATGGTACAAACCCTTTCAACGAGTTTGCTCTCGGAGCATCTCCAAGTGGC AGTGGGCCGAGCTCTGGGGTTGCCAGGGCCCGACCCGCAGCGGCCAGGTT ACTCATGGACAGCCAGGACAGCAAGCCAGCCAAGAAAATACGCACATCTG TCGGCGCTAGGGAACAGAAGACGGCGAAAGGCTTGGTGGAGAAGTACAGG TGAAAATGTGATTTGAAAGTATTCGACTGACATGAATTCGCGCCTACTGC TTGCTGCAGCAGTACCACAGCAGTGATTTTGTAGCCCGCTGCACTCTCTG TCATGTGTTTGCCGCACATGGGTGCTTTGAGCGACAAGGGTCCACCCGGC ATGTCTCTAACCTCGTCACGGTCACCGGTACACATCACCGATTAAAGTGT TCGATCCTTTGCTCTGTAGGCTGTATAGCTGTAGAGCACACACCATGCGG ACAAATAACGGTCGCGAGAACAATACACAAGACAACAATCCGCACCTCTG CCCAGGAAGATACATACACAGACATCCCCGTCAGCTCTCCCCGCGCTGCT GTAAACCGCCGTCGTTTCTCACACGGAAGCAGGTCCCCAGGAGAACCCGA GTGGCCGCTGAGATTGATCATTATCGGCCATAACCCGAGCGATAAGGCGT GGGAACTTGGCCATTACTACGGCAACCCGTCCAACCGCATGTGGAAGTTG CTCTCCGGTGCGGGTATCATTCCTCCCGGATTCACCGCTTCGAACGACCA GGATTGCCCCATCACGAGCGGCGTGGGCTTCACGGATGTGGTGCGTGTAT TGATTTATAATAGGACCGTTTTCTACAAGAATATATGGATTATGGAGTAG GGAGAGAATGGTAAAAAGTGCACGGTGTGTTGGAAGTGTTAACTCCTTCT TCTATTATACGTCGTCGGTGACCAGCATGTTCCGTGACAGCTCAGCCGCA TGCCTCCGATGTGTCAAGTACGAGGCAGGGATTCCGACGAGGAGCGCTGA TATCTTCACGCATGCAGGGGGAAAGTTGGCAACAATTTCCGTTTGCTACG AAACAAGCACTACTCGCGCATGGCTTCCTCGTTTATTGTAAAAACAAACG AATCACCTCGACGTCCAGCGAGTGTCGCTGGACGACCACTCACAACCGAC GCGCGCCATTTGATTCCACCAGGGCTTCTCGATTCCCGGCACCGTCTCCA GCGAGTTCGGCAAAAAAGAGCTGCATTCCTGGCGTGGAGGGTTTTACGAC CGATTAACCGCGCACGCTGAGCGCGCGGCGGCCACGGTAGCCGCGTCAAA ATCATCTCCAGCGGAACCGGCAACGGAGAGGGGCACAGATGGAACCCCCG CGGCGGGCAAGGGGGCTGAACAAGGAGTGGCAACGGCGGCGACAATCAAC GCTGAGGTCGAGGATGGTTATCCCAGCATCATAACCTTCGCTGGAAAACG CCAGGTACTACAACTGCAGTACTCCCGTCAAAACTAGATGTTGATGGTGG CAATACTCGATCGGTATGCAGTGTTTGCCTCAACCACACCATTGCTACAG GGACAGATCGGGCAGAGTTGAGCGAAGTTTTTTTAGCCCTCCCACCTCGT GAAAACACCGCGGGTCGTCCATTTTTCTTCGTTGTGGCCTCCAAAATCAG AACAGTCCGTGCCCGAACCTCCGGTTGCAAGAAGAGCTGTGGGTCGAATA ACGCTCCACATTTCTAAAACTCGTTTTTCTGCCTGCTTCCGCCGAAACAG TGGGAGGAGCTGTTTTTCGACGCTAGCGCGAAGGACAAGGCCAAGACAAA GGGGGGCAAGGCCGGACCCTTTCGGTTCGGCCTGCAGCCGGCTGATTTGC GCCCGCCCGGCTGGCCGTTCCCGGCGGAGCGGACCGAGATGTTCGTTGTA CCGAGCAGCAGCGGCGCGGCCGCTATGACCAACGAGGCTCGCGAAGCCCC GTATCGGAACCTCGGGCAGCACATGTTGAGATCGGGAGAGTGGACACGAG CCCGACGACAGCAAAGTGGCGGTGGAACTTCCTGTGGAGAGAATGGAGCG ACGGTGCCACAGCAGCGATAGAAACGGCAATACCAGCCACCCAGCAAACA ACCGTGCTTCTAGTCAAACCGCACAGAGTTGTAGGCACGAGGAATTCTCA CGGCAATGAGTAATGCGTGGTGATCCGTCACAGAGCTGTCGCTGATTCAG GAATGATGCGCCTTGTGCGTGCAGCTTTGGCTCGAGACCTGGCTCTGCTT TGAGGGGTGCGACGTGGTGGCAAAAGTGGCGCACCGCAGCACCCACACCC CACGGTGTACACATGTACACGCGGAGTTTCGCGTCAAATTTGGCTCACCG AAAAGTAATGTAGTGGTGTCCGTCTTGGCTCGGCGAAAAGTAATTTTGTG GTATCCGTCGTGAACCAACTATCTGATTGTACAGCACGTTTTTTTCTGGT GTAGCTTTGGACCCTCGAAGGATCGACCGTTCTGTAGTCAGCCGGTCCGT CGTGTGTGCGCCTTGTAAGTAAAGCGTAGGAAGTAAAGGAGGGTAGACTT GGGAAGCGGTAGAAGTAGGAGCGGAGCAAGATAGAATCAATAACAGTGAC CTTAGCCATAGCGCTCGGTAGGTCAAACTGTCAGTTCGAAAGACTGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1529:11863..14659+

>mRNA_E-fasciculatus_F_contig1529.3727.1 ID=mRNA_E-fasciculatus_F_contig1529.3727.1|Name=mRNA_E-fasciculatus_F_contig1529.3727.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2268bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1529:11863..14659+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCACGACACGTGGGCCCTGCCGCTATCCCTGTGTTGCTGGTGCTGTT
CTGGTGTTTTCACGTAGTTGTTTCCTTTCTAACCGTACCGCAACCATCTT
TTAGGATGAGTTTGGAGCAGAATGGTACAAACCCTTTCAACGAGTTTGCT
CTCGGAGCATCTCCAAGTGGCAGTGGGCCGAGCTCTGGGGTTGCCAGGGC
CCGACCCGCAGCGGCCAGGTTACTCATGGACAGCCAGGACAGCAAGCCAG
CCAAGAAAATACGCACATCTGTCGGCGCTAGGGAACAGAAGACGGCGAAA
GGCTTGGTGGAGAAGTACAGATGCCACGACACGTGGGCCCTGCCGCTATC
CCTGTGTTGCTGGTGCTGTTCTGGTGTTTTCACGTAGTTGTTTCCTTTCT
AACCGTACCGCAACCATCTTTTAGGATGAGTTTGGAGCAGAATGGTACAA
ACCCTTTCAACGAGTTTGCTCTCGGAGCATCTCCAAGTGGCAGTGGGCCG
AGCTCTGGGGTTGCCAGGGCCCGACCCGCAGCGGCCAGGTTACTCATGGA
CAGCCAGGACAGCAAGCCAGCCAAGAAAATACGCACATCTGTCGGCGCTA
GGGAACAGAAGACGGCGAAAGGCTTGGTGGAGAAGTACAGCAGGTCCCCA
GGAGAACCCGAGTGGCCGCTGAGATTGATCATTATCGGCCATAACCCGAG
CGATAAGGCGTGGGAACTTGGCCATTACTACGGCAACCCGTCCAACCGCA
TGTGGAAGTTGCTCTCCGGTGCGGGTATCATTCCTCCCGGATTCACCGCT
TCGAACGACCAGGATTGCCCCATCACGAGCGGCGTGGGCTTCACGGATGT
GCAGGTCCCCAGGAGAACCCGAGTGGCCGCTGAGATTGATCATTATCGGC
CATAACCCGAGCGATAAGGCGTGGGAACTTGGCCATTACTACGGCAACCC
GTCCAACCGCATGTGGAAGTTGCTCTCCGGTGCGGGTATCATTCCTCCCG
GATTCACCGCTTCGAACGACCAGGATTGCCCCATCACGAGCGGCGTGGGC
TTCACGGATGTGGGCTTCTCGATTCCCGGCACCGTCTCCAGCGAGTTCGG
CAAAAAAGAGCTGCATTCCTGGCGTGGAGGGTTTTACGACCGATTAACCG
CGCACGCTGAGCGCGCGGCGGCCACGGTAGCCGCGTCAAAATCATCTCCA
GCGGAACCGGCAACGGAGAGGGGCACAGATGGAACCCCCGCGGCGGGCAA
GGGGGCTGAACAAGGAGTGGCAACGGCGGCGACAATCAACGCTGAGGTCG
AGGATGGTTATCCCAGCATCATAACCTTCGCTGGAAAACGCCAGGGCTTC
TCGATTCCCGGCACCGTCTCCAGCGAGTTCGGCAAAAAAGAGCTGCATTC
CTGGCGTGGAGGGTTTTACGACCGATTAACCGCGCACGCTGAGCGCGCGG
CGGCCACGGTAGCCGCGTCAAAATCATCTCCAGCGGAACCGGCAACGGAG
AGGGGCACAGATGGAACCCCCGCGGCGGGCAAGGGGGCTGAACAAGGAGT
GGCAACGGCGGCGACAATCAACGCTGAGGTCGAGGATGGTTATCCCAGCA
TCATAACCTTCGCTGGAAAACGCCAGTGGGAGGAGCTGTTTTTCGACGCT
AGCGCGAAGGACAAGGCCAAGACAAAGGGGGGCAAGGCCGGACCCTTTCG
GTTCGGCCTGCAGCCGGCTGATTTGCGCCCGCCCGGCTGGCCGTTCCCGG
CGGAGCGGACCGAGATGTTCGTTGTACCGAGCAGCAGCGGCGCGGCCGCT
ATGACCAACGAGGCTCGCGAAGCCCCGTATCGGAACCTCGGGCAGCACAT
GTTGAGATCGGGAGAGTGGACACGAGCCCGACGACAGCAAAGTGGCGGTG
GAACTTCCTGTGGAGAGAATGGAGCGACGGTGCCACAGCAGCGATAGTGG
GAGGAGCTGTTTTTCGACGCTAGCGCGAAGGACAAGGCCAAGACAAAGGG
GGGCAAGGCCGGACCCTTTCGGTTCGGCCTGCAGCCGGCTGATTTGCGCC
CGCCCGGCTGGCCGTTCCCGGCGGAGCGGACCGAGATGTTCGTTGTACCG
AGCAGCAGCGGCGCGGCCGCTATGACCAACGAGGCTCGCGAAGCCCCGTA
TCGGAACCTCGGGCAGCACATGTTGAGATCGGGAGAGTGGACACGAGCCC
GACGACAGCAAAGTGGCGGTGGAACTTCCTGTGGAGAGAATGGAGCGACG
GTGCCACAGCAGCGATAG
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