mRNA_E-fasciculatus_F_contig15257.3710.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15257.3710.1
Unique NamemRNA_E-fasciculatus_F_contig15257.3710.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig15257.3710.1 vs. uniprot
Match: D8LCV8_ECTSI (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCV8_ECTSI)

HSP 1 Score: 314 bits (805), Expect = 2.060e-108
Identity = 150/153 (98.04%), Postives = 152/153 (99.35%), Query Frame = 1
Query:    1 ELNKNPPEGVSVGLTDDDNMFMWELLIVGPADTLYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNVYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSVVSMLSDPNDESPANIDAAVMWRNDREAFKKKSRLLVRKSQDAL 459
            ELNKNPPEGVSVGL +DDNMFMWELLIVGPADTLYEGGFFKAKLEFPKDFPNNPPTMTF+SEMFHPNVYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSVVSMLSDPNDESPANIDAAVMWRNDREAFKKKSRLLVRKSQDAL
Sbjct:   15 ELNKNPPEGVSVGLANDDNMFMWELLIVGPADTLYEGGFFKAKLEFPKDFPNNPPTMTFISEMFHPNVYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSVVSMLSDPNDESPANIDAAVMWRNDREAFKKKSRLLVRKSQDAL 167          
BLAST of mRNA_E-fasciculatus_F_contig15257.3710.1 vs. uniprot
Match: A0A836CP86_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP86_9STRA)

HSP 1 Score: 262 bits (670), Expect = 7.850e-88
Identity = 121/153 (79.08%), Postives = 137/153 (89.54%), Query Frame = 1
Query:    1 ELNKNPPEGVSVGLTDDDNMFMWELLIVGPADTLYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNVYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSVVSMLSDPNDESPANIDAAVMWRNDREAFKKKSRLLVRKSQDAL 459
            ELN+NPPEGVSVGL DD N++ WELLIVGP DTLYE G FKA LEFPKDFPN+PPTMTF S+M+HPNVY DGRVCISILHPPGED+FN+QETAEERWRPILGVE II+SV+SMLSDPNDESPANIDAAV WR++R+AFKK+ R  VRKS + +
Sbjct:   15 ELNRNPPEGVSVGLVDDSNIYQWELLIVGPPDTLYEEGLFKATLEFPKDFPNSPPTMTFTSDMWHPNVYEDGRVCISILHPPGEDRFNDQETAEERWRPILGVESIIMSVISMLSDPNDESPANIDAAVQWRSERDAFKKRVRKCVRKSHEDM 167          
BLAST of mRNA_E-fasciculatus_F_contig15257.3710.1 vs. uniprot
Match: A0A4D9D8W7_9STRA (UBC core domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8W7_9STRA)

HSP 1 Score: 261 bits (667), Expect = 2.170e-87
Identity = 124/153 (81.05%), Postives = 137/153 (89.54%), Query Frame = 1
Query:    1 ELNKNPPEGVSVGLTDDDNMFMWELLIVGPADTLYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNVYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSVVSMLSDPNDESPANIDAAVMWRNDREAFKKKSRLLVRKSQDAL 459
            ELNKNPPEGVSVGL DD ++F WELL+VGPADTLYEGGFFKA+L FP DFPN PPTMTF +EM+HPNVY DGRVCISILHPPGED+FN QE+A+ERWRPILGVE IIVSV+SMLSDPNDESPANIDAAV WRNDR  FKK+ R +VRKSQ+ L
Sbjct:   15 ELNKNPPEGVSVGLVDD-SVFEWELLLVGPADTLYEGGFFKARLTFPSDFPNMPPTMTFQTEMWHPNVYEDGRVCISILHPPGEDRFNSQESADERWRPILGVEAIIVSVISMLSDPNDESPANIDAAVQWRNDRAGFKKRVRAVVRKSQEDL 166          
BLAST of mRNA_E-fasciculatus_F_contig15257.3710.1 vs. uniprot
Match: A0A067CW50_SAPPC (UBC core domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CW50_SAPPC)

HSP 1 Score: 257 bits (656), Expect = 1.030e-85
Identity = 115/153 (75.16%), Postives = 139/153 (90.85%), Query Frame = 1
Query:    1 ELNKNPPEGVSVGLTDDDNMFMWELLIVGPADTLYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNVYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSVVSMLSDPNDESPANIDAAVMWRNDREAFKKKSRLLVRKSQDAL 459
            EL++NPPEGVSVGL DD+N+F WE+++VGP DTLYEGGFF+A+LEFPKDFPN PP MTF+S+M+HPNVYP G VCISILHPPGED+ N QE+A+ERWRPILGVE I+VSV+SMLSDPND+SPANIDAAV WRND++AFKK+ R +VRKSQ+ +
Sbjct:   14 ELSRNPPEGVSVGLGDDENIFHWEIMLVGPPDTLYEGGFFRARLEFPKDFPNMPPKMTFISDMWHPNVYPSGVVCISILHPPGEDQMNAQESADERWRPILGVESILVSVISMLSDPNDDSPANIDAAVEWRNDKDAFKKRCRRIVRKSQEDI 166          
BLAST of mRNA_E-fasciculatus_F_contig15257.3710.1 vs. uniprot
Match: A0A024UPR9_9STRA (UBC core domain-containing protein n=7 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024UPR9_9STRA)

HSP 1 Score: 254 bits (649), Expect = 1.200e-84
Identity = 116/153 (75.82%), Postives = 137/153 (89.54%), Query Frame = 1
Query:    1 ELNKNPPEGVSVGLTDDDNMFMWELLIVGPADTLYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNVYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSVVSMLSDPNDESPANIDAAVMWRNDREAFKKKSRLLVRKSQDAL 459
            EL++NPPEGVSVGL DD+N+F WE+++VGP DTLYEG FFKA+LEFPKDFPN PP MTFVSEM+HPNVYP+G VCISILHPPGED+ N QE+A+ERWRPILGVE I+VSV+SMLSDPND+SPANIDAAV WR ++EAFKK  R +VRKSQ+ +
Sbjct:   14 ELSRNPPEGVSVGLGDDENLFNWEIMLVGPPDTLYEGAFFKARLEFPKDFPNMPPKMTFVSEMWHPNVYPNGVVCISILHPPGEDRMNAQESADERWRPILGVEAILVSVISMLSDPNDDSPANIDAAVEWRTNKEAFKKHCRRIVRKSQEDI 166          
BLAST of mRNA_E-fasciculatus_F_contig15257.3710.1 vs. uniprot
Match: A0A1Z5JLS8_FISSO (Ubiquitin-conjugating enzyme E2 G1 n=7 Tax=Bacillariophyta TaxID=2836 RepID=A0A1Z5JLS8_FISSO)

HSP 1 Score: 252 bits (643), Expect = 1.020e-83
Identity = 119/151 (78.81%), Postives = 134/151 (88.74%), Query Frame = 1
Query:    1 ELNKNPPEGVSVGLTDDDNMFMWELLIVGPADTLYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNVYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSVVSMLSDPNDESPANIDAAVMWRNDREAFKKKSRLLVRKSQD 453
            +L KNP + VSVGL DD N++ WE+LI+GP  TLYEGGFFKAKL FP DFPN PPTMTF SEM+HPNVY DGRVCISILHPPGED+FN+QE+AEERWRPILGVE I+VSV+SMLSDPNDESPAN+DAAVMWRNDR AFKKK R +VRKSQ+
Sbjct:   15 DLAKNPIDLVSVGLVDDSNVYEWEILIMGPDGTLYEGGFFKAKLVFPPDFPNMPPTMTFTSEMWHPNVYTDGRVCISILHPPGEDEFNQQESAEERWRPILGVEQILVSVISMLSDPNDESPANLDAAVMWRNDRAAFKKKVRQVVRKSQE 165          
BLAST of mRNA_E-fasciculatus_F_contig15257.3710.1 vs. uniprot
Match: A0A8K1CH94_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CH94_PYTOL)

HSP 1 Score: 252 bits (643), Expect = 1.060e-83
Identity = 114/153 (74.51%), Postives = 135/153 (88.24%), Query Frame = 1
Query:    1 ELNKNPPEGVSVGLTDDDNMFMWELLIVGPADTLYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNVYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSVVSMLSDPNDESPANIDAAVMWRNDREAFKKKSRLLVRKSQDAL 459
            E++KNPPEGVSVGL DD+N+F WE+L++GP DTLYEGGFFKA LEFP +FPN PP MTF SEM+HPNVYP+G VCISILHPPGED+ N+ ETA+ERWRPILGVE I+VSV+SMLSDPND+SPANIDAAV WRND++ FKK  R +VRKSQ+ +
Sbjct:   16 EMSKNPPEGVSVGLGDDENIFRWEILLIGPPDTLYEGGFFKAVLEFPPNFPNMPPKMTFTSEMWHPNVYPNGIVCISILHPPGEDQLNQHETADERWRPILGVEAILVSVISMLSDPNDDSPANIDAAVEWRNDKDGFKKHCRRIVRKSQEDI 168          
BLAST of mRNA_E-fasciculatus_F_contig15257.3710.1 vs. uniprot
Match: A0A7S2AVY1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AVY1_9STRA)

HSP 1 Score: 252 bits (643), Expect = 1.430e-83
Identity = 116/153 (75.82%), Postives = 135/153 (88.24%), Query Frame = 1
Query:    1 ELNKNPPEGVSVGLTDDDNMFMWELLIVGPADTLYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNVYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSVVSMLSDPNDESPANIDAAVMWRNDREAFKKKSRLLVRKSQDAL 459
            +LN+NPP+GVSVGL DDDN+ +WE++++GP++T+YEGGFFKA LEFP DFPN PP M FVSEM+HPNVY DGRVCISILHPPGEDK+N QETAEERWRPILGVE II+SV+SML DPNDESPANIDAAVM R DR AFKKK R  VRKS++ +
Sbjct:   25 DLNRNPPDGVSVGLVDDDNIMIWEIMLIGPSETMYEGGFFKATLEFPPDFPNMPPEMRFVSEMWHPNVYADGRVCISILHPPGEDKYNAQETAEERWRPILGVEQIILSVMSMLGDPNDESPANIDAAVMLREDRPAFKKKVRQCVRKSEEDM 177          
BLAST of mRNA_E-fasciculatus_F_contig15257.3710.1 vs. uniprot
Match: H3GA22_PHYRM (UBC core domain-containing protein n=21 Tax=Oomycota TaxID=4762 RepID=H3GA22_PHYRM)

HSP 1 Score: 251 bits (640), Expect = 1.760e-83
Identity = 115/152 (75.66%), Postives = 134/152 (88.16%), Query Frame = 1
Query:    4 LNKNPPEGVSVGLTDDDNMFMWELLIVGPADTLYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNVYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSVVSMLSDPNDESPANIDAAVMWRNDREAFKKKSRLLVRKSQDAL 459
            +++NPPEGVSVGL DD+N+F WE+L+VGP DTLYEGGFFKA LEFP DFPN PP MTF SEM+HPNVYP+G VCISILHPPGED  N+QETA+ERWRPILGVE I+VSV+SMLSDPND+SPANIDAAV WR+D+E FKK  R +VRKSQ+ +
Sbjct:    1 MSRNPPEGVSVGLGDDENIFNWEILLVGPPDTLYEGGFFKAGLEFPSDFPNMPPKMTFKSEMWHPNVYPNGVVCISILHPPGEDHLNQQETADERWRPILGVESILVSVISMLSDPNDDSPANIDAAVEWRSDKEGFKKHCRRIVRKSQEDI 152          
BLAST of mRNA_E-fasciculatus_F_contig15257.3710.1 vs. uniprot
Match: A0A7S0XFZ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XFZ8_9STRA)

HSP 1 Score: 245 bits (626), Expect = 3.970e-81
Identity = 112/147 (76.19%), Postives = 129/147 (87.76%), Query Frame = 1
Query:    1 ELNKNPPEGVSVGLTDDDNMFMWELLIVGPADTLYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNVYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSVVSMLSDPNDESPANIDAAVMWRNDREAFKKKSRLLVR 441
            +L++NPP+GVSVGL +DDN+F WE++IVGP DTLYEGG FKA L+FP+DFPNNPP M F S M+HPNV+ DG+VCISILHPPG D FNEQETAEERWRPILGVE II+SV+SMLSDPND SPANIDAAVMWRND+  FKKK R +VR
Sbjct:   21 DLSRNPPDGVSVGLREDDNIFHWEVMIVGPPDTLYEGGLFKATLDFPEDFPNNPPVMAFTSAMWHPNVFADGKVCISILHPPGVDHFNEQETAEERWRPILGVESIILSVISMLSDPNDSSPANIDAAVMWRNDKNNFKKKVRDIVR 167          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15257.3710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCV8_ECTSI2.060e-10898.04UBC core domain-containing protein n=2 Tax=Ectocar... [more]
A0A836CP86_9STRA7.850e-8879.08Ubiquitin-conjugating enzyme/RWD-like protein n=1 ... [more]
A0A4D9D8W7_9STRA2.170e-8781.05UBC core domain-containing protein n=1 Tax=Nannoch... [more]
A0A067CW50_SAPPC1.030e-8575.16UBC core domain-containing protein n=3 Tax=Saprole... [more]
A0A024UPR9_9STRA1.200e-8475.82UBC core domain-containing protein n=7 Tax=Saprole... [more]
A0A1Z5JLS8_FISSO1.020e-8378.81Ubiquitin-conjugating enzyme E2 G1 n=7 Tax=Bacilla... [more]
A0A8K1CH94_PYTOL1.060e-8374.51Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2AVY1_9STRA1.430e-8375.82Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
H3GA22_PHYRM1.760e-8375.66UBC core domain-containing protein n=21 Tax=Oomyco... [more]
A0A7S0XFZ8_9STRA3.970e-8176.19Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15257contigE-fasciculatus_F_contig15257:460..2775 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score315.5
Seed ortholog evalue1.4e-83
Seed eggNOG ortholog2880.D8LCV8
KEGG koko:K10575
KEGG Pathwayko04120,ko04141,ko05012,map04120,map04141,map05012
GOsGO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0031625,GO:0032446,GO:0036211,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0051603,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0070534,GO:0070647,GO:0070936,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0425@2759
EC2.3.2.23
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquitin-conjugating enzyme/RWD-like
Ec32 orthologEc-07_007090.1
Exons4
Model size462
Cds size462
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15257.3710.1prot_E-fasciculatus_F_contig15257.3710.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15257 460..2775 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928006.6230848-CDS-E-fasciculatus_F_contig15257:459..6511622928006.6230848-CDS-E-fasciculatus_F_contig15257:459..651Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15257 460..651 -
1695995785.8161325-CDS-E-fasciculatus_F_contig15257:459..6511695995785.8161325-CDS-E-fasciculatus_F_contig15257:459..651Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15257 460..651 -
1622928006.6344337-CDS-E-fasciculatus_F_contig15257:1286..13541622928006.6344337-CDS-E-fasciculatus_F_contig15257:1286..1354Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15257 1287..1354 -
1695995785.829467-CDS-E-fasciculatus_F_contig15257:1286..13541695995785.829467-CDS-E-fasciculatus_F_contig15257:1286..1354Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15257 1287..1354 -
1622928006.6452682-CDS-E-fasciculatus_F_contig15257:1817..19201622928006.6452682-CDS-E-fasciculatus_F_contig15257:1817..1920Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15257 1818..1920 -
1695995785.8417008-CDS-E-fasciculatus_F_contig15257:1817..19201695995785.8417008-CDS-E-fasciculatus_F_contig15257:1817..1920Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15257 1818..1920 -
1622928006.6562083-CDS-E-fasciculatus_F_contig15257:2676..27751622928006.6562083-CDS-E-fasciculatus_F_contig15257:2676..2775Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15257 2677..2775 -
1695995785.8595893-CDS-E-fasciculatus_F_contig15257:2676..27751695995785.8595893-CDS-E-fasciculatus_F_contig15257:2676..2775Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15257 2677..2775 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15257.3710.1

>prot_E-fasciculatus_F_contig15257.3710.1 ID=prot_E-fasciculatus_F_contig15257.3710.1|Name=mRNA_E-fasciculatus_F_contig15257.3710.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=154bp
ELNKNPPEGVSVGLTDDDNMFMWELLIVGPADTLYEGGFFKAKLEFPKDF
PNNPPTMTFVSEMFHPNVYPDGRVCISILHPPGEDKFNEQETAEERWRPI
LGVEGIIVSVVSMLSDPNDESPANIDAAVMWRNDREAFKKKSRLLVRKSQ
DAL*
back to top

mRNA from alignment at E-fasciculatus_F_contig15257:460..2775-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15257.3710.1 ID=mRNA_E-fasciculatus_F_contig15257.3710.1|Name=mRNA_E-fasciculatus_F_contig15257.3710.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2316bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15257:460..2775- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAACTCAACAAGAACCCCCCGGAGGGGGTCTCCGTAGGTCTGACCGATGA CGACAATATGTTTATGTGGGAGCTGCTTATCGTGGGCCCAGCAGATACGG TGAGTGCTCGCCTTCCCCGCCGTCGTTTGCGGAGAACCAACCACGGTCAG TTGTTCATGTTGTCTTTGGTGACCCGTCCATCAAGTAGACAAAACCGCCA AGTGTCTTGCCTATTTGTTGGGCGTACTATATATCGACTTCGAAGTGGTA TTTTTGTGTTGTTTTTTGGTCTCGCCACTTTTTTTTGCCTCTCCTCTTGA TGAAAGAAATTCCGGCAACCAGCCGTGATGCTGGTCAACAAGCAAGCTCG GCAGCCTGTGACTCCAGTATATGGTCGTAGGTACTGCTGTGCCGACATGT TTTCTGAAGATCCATTCACGTCTTGTATTTTCGGTGCCGATGGCTTGTCT TAGACATACCTCAATGAAGGAAAAAACCCAGAGAGGGGGGCCACGTTTGT GCATGCTCTGGGTAGTTGAAAACACAATGCCCAACAAGTACAGTTATCTT CTCGGGGTGTTGTCAGCCAGAGCGTGGATCTATTCGGAGTAGCCACGCCC CCGCCCCGCTAGCAGAGAAGTGTCGGGTAGCCAGGGTTGGGGTTACGACA GTTTGGGAGTGTTTTTTTTACTCCTCATCACCGCGGCCATGCGTGTGTTT TTGTGACGATGTGATGCAGACGTTGTTGGCTGTTGCCGGAACCTCGAGAT TTTTCACGTCACGCCGGCCTTCTGCTTGCCTTGTTGGTTCTTGCTTTCAT GCCCCCTCTTGCCTTTTCGTGTGTTTGGTGTCTTGTGTTCTTTTTGGCAC TTCAGCTGTATGAGGGAGGGTTCTTCAAGGCCAAGCTCGAGTTCCCGAAA GACTTCCCGAACAACCCTCCGACCATGACATTTGTCAGCGAGATGTTCCA TCCCAATGGTGAGAAGCGTTTGCTCTGTTGGTGACGGCGTCCATGATTCT GGCGTTGTCGTGTCGTCGTTGTTGTTATTTCTCTACTACACAAGCCGTTC TCATGGCCCATGTTGCCTTTATTGGTTGCCGCCGTTTTTCTCAGACCATG TTTCGGCGCTGCCGTTGTCCTAGTAGACACGCAGACACGCGCAAAGGTTG TCCTTAATCACATGTTAGCAGGAGTGAAACGCACCCGGTCGTACTTCAGT CTCAGCGTTGGCTCGTACAAGTATTATCACAGTGTCGGCCGCCCTTGAAC TCACAGGGAAATACTTTTTTTTGTCCGCCACGCAACCTGGCTGTTCTCCG CAACCGTGTCGTCTTTTTTTTTTTTTTTTTTTTTCTTAATATGACACAAC GAATCCATCTCTAAGAAAATATATATATATATATTTTTTTTGCCTGCTTT TTTTGTGAACGCCGGCCGCAGTGTACCCGGACGGGAGGGTGTGCATTTCG ATCCTGCACCCACCGGGGGAGGACAAGTTCAACGAACAGGTACATACATG TGCACACGACACCCATTCCGACACTCATTCGGAGGGTCTTGAGCGCGTCC GTGCTCTCTCCGCCCGGGCGTGCGTTGTTTGTGGCTTGTGCAAACGAGTG TAGAGATTTGAGCCCGCAAGATTTTTTACCTGAAACTTCATTTCTCGCAG ACATCATTTTTGTCCGCAGAGAACATCTTGTGTCGGAACGAGGCAATCGC ATTCTCTCGGTGCTTGCGTACGTCTGTGGTTTTTTCCTGCCCTACCAAGT CATGTTTTGTTGCGTCTTATTTTCTTTGTCTTGACTTGAAAACAGCGCTC ACAGCACTTACGCCGTTTTCTCCAACCCGTGATGAAAGCTAGTCGTTCAT TCAGCTGCGGCGCACGTTGCGTCCGTACGTAAGCACCTCTAGTTCCTAGG TTCATCTACGAAACGGCCGCTGCGTAATTTATAGTGTTGGCGGGGCGTTT TTAACCAAAACGCTCACAATTTGTGCTCAAACCCGTTCGATTTTTGAGTT TTATTATGCTCAATTATTTCTTGACCGCCAAGTGTGTTAATGTTGGCGTA GATCGTGAAATATCTCCCAGGTTGTCGAGCGCGGCCTTCGACTCTCTAAC TGCTGTACCGACGTGATGTAACAGGAAACCGCGGAGGAACGCTGGCGCCC GATTCTGGGGGTGGAAGGGATCATCGTCTCCGTCGTCTCGATGCTCTCGG ACCCGAACGACGAGTCCCCGGCCAATATCGACGCGGCGGTCATGTGGCGA AATGACCGCGAAGCCTTCAAAAAGAAGTCGCGCCTTTTGGTTCGCAAGTC CCAGGACGCGCTGTGA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15257:460..2775-

>mRNA_E-fasciculatus_F_contig15257.3710.1 ID=mRNA_E-fasciculatus_F_contig15257.3710.1|Name=mRNA_E-fasciculatus_F_contig15257.3710.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=924bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15257:460..2775- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAACTCAACAAGAACCCCCCGGAGGGGGTCTCCGTAGGTCTGACCGATGA
CGACAATATGTTTATGTGGGAGCTGCTTATCGTGGGCCCAGCAGATACGG
AACTCAACAAGAACCCCCCGGAGGGGGTCTCCGTAGGTCTGACCGATGAC
GACAATATGTTTATGTGGGAGCTGCTTATCGTGGGCCCAGCAGATACGCT
GTATGAGGGAGGGTTCTTCAAGGCCAAGCTCGAGTTCCCGAAAGACTTCC
CGAACAACCCTCCGACCATGACATTTGTCAGCGAGATGTTCCATCCCAAT
GCTGTATGAGGGAGGGTTCTTCAAGGCCAAGCTCGAGTTCCCGAAAGACT
TCCCGAACAACCCTCCGACCATGACATTTGTCAGCGAGATGTTCCATCCC
AATGTGTACCCGGACGGGAGGGTGTGCATTTCGATCCTGCACCCACCGGG
GGAGGACAAGTTCAACGAACAGTGTACCCGGACGGGAGGGTGTGCATTTC
GATCCTGCACCCACCGGGGGAGGACAAGTTCAACGAACAGGAAACCGCGG
AGGAACGCTGGCGCCCGATTCTGGGGGTGGAAGGGATCATCGTCTCCGTC
GTCTCGATGCTCTCGGACCCGAACGACGAGTCCCCGGCCAATATCGACGC
GGCGGTCATGTGGCGAAATGACCGCGAAGCCTTCAAAAAGAAGTCGCGCC
TTTTGGTTCGCAAGTCCCAGGACGCGCTGTGAGAAACCGCGGAGGAACGC
TGGCGCCCGATTCTGGGGGTGGAAGGGATCATCGTCTCCGTCGTCTCGAT
GCTCTCGGACCCGAACGACGAGTCCCCGGCCAATATCGACGCGGCGGTCA
TGTGGCGAAATGACCGCGAAGCCTTCAAAAAGAAGTCGCGCCTTTTGGTT
CGCAAGTCCCAGGACGCGCTGTGA
back to top