mRNA_E-fasciculatus_F_contig15230.3698.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15230.3698.1
Unique NamemRNA_E-fasciculatus_F_contig15230.3698.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15230.3698.1 vs. uniprot
Match: D7G924_ECTSI (UPF0020 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G924_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 7.090e-11
Identity = 34/64 (53.12%), Postives = 39/64 (60.94%), Query Frame = 1 
Query:   28 RCVLLHGLFEVWGHGRNREDAVRDAFKCPR--------------TRPGSDSSRKEEREGVLYLP 177
            RCVLLHGLFEVWGHGRNREDA+RDAFK  R              TR G  +  KEE++ +   P
Sbjct:   94 RCVLLHGLFEVWGHGRNREDAIRDAFKSGRFLQHAGNASWSLGVTRYGRSNLNKEEQQALAGGP 157
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15230.3698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G924_ECTSI7.090e-1153.13UPF0020 domain-containing protein n=1 Tax=Ectocarp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15230contigE-fasciculatus_F_contig15230:1103..2706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue8.2e-09
Seed eggNOG ortholog2880.D7G924
KEGG koko:K03178
KEGG Pathwayko04120,ko05012,map04120,map05012
EggNOG free text desc.tRNA (guanine-N2-)-methyltransferase activity
EggNOG OGsCOG1041@1,KOG2671@2759
EC6.2.1.45
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size195
Cds size195
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928005.273521-CDS-E-fasciculatus_F_contig15230:1102..12091622928005.273521-CDS-E-fasciculatus_F_contig15230:1102..1209Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15230 1103..1209 +
1695995785.1390371-CDS-E-fasciculatus_F_contig15230:1102..12091695995785.1390371-CDS-E-fasciculatus_F_contig15230:1102..1209Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15230 1103..1209 +
1622928005.3157244-CDS-E-fasciculatus_F_contig15230:2618..27061622928005.3157244-CDS-E-fasciculatus_F_contig15230:2618..2706Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15230 2619..2706 +
1695995785.151507-CDS-E-fasciculatus_F_contig15230:2618..27061695995785.151507-CDS-E-fasciculatus_F_contig15230:2618..2706Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15230 2619..2706 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15230.3698.1prot_E-fasciculatus_F_contig15230.3698.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15230 1103..2706 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15230.3698.1

>prot_E-fasciculatus_F_contig15230.3698.1 ID=prot_E-fasciculatus_F_contig15230.3698.1|Name=mRNA_E-fasciculatus_F_contig15230.3698.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=65bp
MVSAVWHDIRCVLLHGLFEVWGHGRNREDAVRDAFKCPRTRPGSDSSRKE
EREGVLYLPRVATGG
back to top

mRNA from alignment at E-fasciculatus_F_contig15230:1103..2706+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15230.3698.1 ID=mRNA_E-fasciculatus_F_contig15230.3698.1|Name=mRNA_E-fasciculatus_F_contig15230.3698.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1604bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15230:1103..2706+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTCTCTGCTGTGTGGCACGATATCAGGTGCGTTTTGCTGCACGGGCT
CTTCGAAGTATGGGGGCATGGTCGGAACCGGGAGGACGCCGTCAGGGATG
CATTCAAGTGAGTGAAGAGTGAAGCGAGAGAGAGAAATTGAACGGAATGT
GCGATACAGTCCGACACGGCTTCTCAACACAGGAAATTCGTGCTGTCCTC
GATATTCCCGATACCGGGCATGTCACCGCCTGTCACCGCGTCCACACCTG
GCCGTCTGGTCGTTTGGGTTGAAGCCTGCGGGTCGGACAAGTCGGTCACC
AGCTGAACTAGCGTGCACCCGTGCACTCCAGCATAGCCCGAGCATTCTAG
AATGCGCCGATAATAAGACCTTCACCAGTGAGCTCCAGCTAGCCCCACGC
GTAAGCACACATGCTTGCAGCGGCGACAAGTGCTGTGGTGCGTAGGTTAG
TCTTCGATGGTGTGCGGGGTGTTTGTCCCAGGTTTCGAGGTCCGACGCGC
TGTCCTGTGTCATGCTTTTCTCTGCTGTGTTGAGCGATAACTGATGCCGG
TTGACGTTTGGTGTAAGCGGTGTTCTGGGCTATATCACAGCAGACTACAT
GTAGAGTCGAGACGTTGAGAGACCACGTATTGCTGGTCTTGTTGCAGATC
GGGTCACTTTCTTCAGCACGCCGGCGACGCTTCGTGGTCTCTGGGGGTGA
CATGCTACGGCCGGTCTAGCCTCAACAAATCAGAACAGCAGCGTCTCGCA
GGTGGTTCCGTGGGGACGTTTTTGTCCTCATTCTTGAATGGTCCAAGGTA
CGTTTCACACTTTGGAATTTTTTTTTCTGATTTGCCACGCGCACACGTCG
GCGAGGTGTGATTCTCCTGCGAACAATAATGTGCCCACTTTGTTTTTGTG
CCAGCCGAGTAGCCTGAACACGTTGCGACTGGAAGGTATTCGCGCGGTAG
CAAAGCAAGCTTCATGCCCAACGTAACCGACGTGTTTTATGATTGGGTAC
ACAAAACCGAGCAGGTCAAGATATTTAGCCGAAAATCAGGTAGTTTCTGT
AGCGTGGGGCAATTTGTTGTTTCAGCACGGTGTACAACTTTGTCCGCGTA
CGTTGAACCAACAATCAAGAGCGGAAACAAAAAAGCAGTTCAGCTAACCG
AAGCCACTTCACTAAAGTCATGCTGTATCGACACACTTGCGCTTTGCGCA
ACGCGGACGTGAGTTCAGTAATAGTGGTTGCACTGGTGTGCTAACTTTAG
TTATGTTTCGGGTGTTGGACTTGACGACAAGATTTTAGCACCAGGACTTT
TTTGCCTTTCTGCTGTGCGCATGTCGTGGACTTCGCCGTGAACCTCCGAC
TGCTTGATGCCTGCCCACGACCACCCTGTGAAATGTTCTTGAACGCTTGG
TACCCACGTTGCTTTCTCCGGGTTGATCTGCGGAAGGACCGAGTCGGTGC
ACAGCGATATCCGCGTCCGGATCATCGAGGACCTTTGCCCACCCCCCGCC
GAAAATTTACCAAGAGATGTCCGAGAACGCGCCCAGGCAGCGACAGTAGC
CGGAAGGAGGAGAGAGAAGGCGTTCTATATCTGCCGCGAGTTGCAACTGG
GGGC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15230:1103..2706+

>mRNA_E-fasciculatus_F_contig15230.3698.1 ID=mRNA_E-fasciculatus_F_contig15230.3698.1|Name=mRNA_E-fasciculatus_F_contig15230.3698.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=390bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15230:1103..2706+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTCTCTGCTGTGTGGCACGATATCAGGTGCGTTTTGCTGCACGGGCT
CTTCGAAGTATGGGGGCATGGTCGGAACCGGGAGGACGCCGTCAGGGATG
CATTCAAATGGTCTCTGCTGTGTGGCACGATATCAGGTGCGTTTTGCTGC
ACGGGCTCTTCGAAGTATGGGGGCATGGTCGGAACCGGGAGGACGCCGTC
AGGGATGCATTCAAATGTCCGAGAACGCGCCCAGGCAGCGACAGTAGCCG
GAAGGAGGAGAGAGAAGGCGTTCTATATCTGCCGCGAGTTGCAACTGGGG
GCATGTCCGAGAACGCGCCCAGGCAGCGACAGTAGCCGGAAGGAGGAGAG
AGAAGGCGTTCTATATCTGCCGCGAGTTGCAACTGGGGGC
back to top