mRNA_E-fasciculatus_F_contig1522.3692.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1522.3692.1
Unique NamemRNA_E-fasciculatus_F_contig1522.3692.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1522.3692.1 vs. uniprot
Match: D7G6T5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T5_ECTSI)

HSP 1 Score: 207 bits (526), Expect = 5.040e-60
Identity = 114/197 (57.87%), Postives = 130/197 (65.99%), Query Frame = 1
Query:   13 IIPTALTVGMLKYRPCLKASYDPSLDCFRVWMHGIFPSFVLAVIVYTWHLTQPYYVSGATHFAWIFSEVLEPLAVVPQLLVSRGSTDAGQLGWTYVILMGIYPPLCVLSWVDTGRHYHFRAHYPFFYAAGIVQTGMYLMFLVTRRVRASPHSPPDETGPVDTMDSTSSARDRLLRDQDSDTDSSPNRERGLDGELRG 603
            II TALT+GM KYRP LKASYD SL                           PY  +   +F W FSEVLEPLA+VPQLLV RGSTDAG+L WTYV LMG Y    +L+WV    + +   H+P  YAAGI+QTGMYLMFLV R VR SPH PPDETG VD M+ TSSAR+RLL DQD+DT+ S NRERGLDGE+ G
Sbjct:   33 IILTALTIGMFKYRPSLKASYDASL---------------------------PYSQTSLVNFLWTFSEVLEPLALVPQLLVFRGSTDAGRLAWTYVTLMGAYRAFYILNWVYRSHYEYGYIHHPLVYAAGIIQTGMYLMFLVDRGVRVSPHLPPDETGDVDIMEPTSSARERLLPDQDTDTEPSRNRERGLDGEVHG 202          
BLAST of mRNA_E-fasciculatus_F_contig1522.3692.1 vs. uniprot
Match: D7FRR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR1_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 1.000e-38
Identity = 83/149 (55.70%), Postives = 92/149 (61.74%), Query Frame = 1
Query:   13 IIPTALTVGMLKYRPCLKASYDPSLDCFRVWMHGIFPSFVLAVIVYTWHLTQPYYVSGATHFAWIFSEVLEPLAVVPQLLVSRGSTDAGQLGWTYVILMGIYPPLCVLSWVDTGRHYHFRAHYPFFYAAGIVQTGMYLMFLVTRRVRAS 459
            I  T LT+GMLK RP LKASYD SL                            YY+ G   FAW FSEVLEPLAVVPQLLV RGSTDAG+LGWTYV LMG Y  L +L+WV    + +   H+P  YAAGIVQTGMYLMFLV RRVR +
Sbjct:   69 IFLTGLTIGMLKSRPSLKASYDASLH---------------------------YYLPGVLRFAWNFSEVLEPLAVVPQLLVFRGSTDAGRLGWTYVTLMGAYRALYILNWVYLSYNDYAYRHHPLVYAAGIVQTGMYLMFLVDRRVRCA 190          
BLAST of mRNA_E-fasciculatus_F_contig1522.3692.1 vs. uniprot
Match: D8LJM2_ECTSI (PGPS/D6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJM2_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 3.820e-17
Identity = 49/140 (35.00%), Postives = 77/140 (55.00%), Query Frame = 1
Query:   22 TALTVGMLKYRPCLKASYDPSLDCFRVWMHGIFPSFVLAVIVYTWH---LTQPYYVSGATHFAWIFSEVLEPLAVVPQLLVSRGSTDAGQLGWTYVILMGIYPPLCVLSWVDTGRHYHFRAHYPFFYAAGIVQTGMYLMF 432
            T+L + M++    +KA+YD S D F  W   + P   L +++++W    ++ P+  S   +F W FSEVLEP A+VPQL+V +   +   L   YV L+G Y  L +++WV    +     H+   Y AG+VQT +Y  F
Sbjct:   71 TSLIIYMIREHIPIKATYDKSQDSFLHWQFAVAPCAALGLLIHSWSWWTVSMPF--SSLINFFWTFSEVLEPFAIVPQLMVLQRYREVENLTGHYVFLLGAYRSLYIVNWVYRAHYEAGYQHHVLVYIAGLVQTLLYADF 208          
BLAST of mRNA_E-fasciculatus_F_contig1522.3692.1 vs. uniprot
Match: A0A7S2XZQ8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZQ8_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.690e-13
Identity = 49/140 (35.00%), Postives = 70/140 (50.00%), Query Frame = 1
Query:   13 IIPTALTVGMLKYRPCLKASYDPSLDCFRVWMHGIFPSFVLAVIVYTWHLTQPYYVSGATHFAWIFSEVLEPLAVVPQLLVSRGSTDAGQLGWTYVILMGIYPPLCVLSWVDTGRHYHFRAHYPFFYAAGIVQTGMYLMF 432
            I  T+  + M++  P  KA+YD   D F      + P  VLA+I    +L Q +     T   WIFS  LE  A++PQL+V +   +   L   YV L+G Y  L +++WV    H     H    YAAG+VQT +Y+ F
Sbjct:   70 ISSTSYIIYMMRMLPTYKATYDKDQDSFLHIYFAVVPCLVLALIT---NLVQGF---DFTEMLWIFSIYLEATAIIPQLVVLQRYREVENLTGNYVFLLGCYRALYIMNWVYRAYHEAHYRHSYVAYAAGVVQTALYVDF 203          
BLAST of mRNA_E-fasciculatus_F_contig1522.3692.1 vs. uniprot
Match: A0A6A6E844_9PEZI (Uncharacterized protein n=1 Tax=Zopfia rhizophila CBS 207.26 TaxID=1314779 RepID=A0A6A6E844_9PEZI)

HSP 1 Score: 59.7 bits (143), Expect = 4.570e-6
Identity = 35/115 (30.43%), Postives = 58/115 (50.43%), Query Frame = 1
Query:   97 RVWMHGIFPSFVLAVIVYTWHLTQPYYVSGATHFA---WIFSEVLEPLAVVPQLLVSRGSTDAGQLGWTYVILMGIYPPLCVLSWVDTGRHYHFRAHYPFFYAAGIVQTGMYLMF 432
            + W  GI+      VI   W+L    +V G + F    W+FSE+LE + V+PQLL+ R +T    L   Y++ +G Y  L +L+W+    +   +   P  +  G +QT + + F
Sbjct:  100 KAWKFGIYCLLASVVIAPFWYLIFKKWVVGKSLFLKLLWVFSEILESVCVIPQLLLLRQTTVPTVLDSFYLVTLGTYRFLYILNWIVRSANEGSKYKDPTSWVWGTIQTALMIDF 214          
BLAST of mRNA_E-fasciculatus_F_contig1522.3692.1 vs. uniprot
Match: A0A8E2JCD6_9PEZI (ER lumen protein retaining receptor n=1 Tax=Lepidopterella palustris CBS 459.81 TaxID=1314670 RepID=A0A8E2JCD6_9PEZI)

HSP 1 Score: 58.5 bits (140), Expect = 1.030e-5
Identity = 36/117 (30.77%), Postives = 58/117 (49.57%), Query Frame = 1
Query:   97 RVWMHGIFPSFVLAVIVYTWHLTQPYYVSGATHFA---WIFSEVLEPLAVVPQLLVSRGSTDAGQLGWTYVILMGIYPPLCVLSWVDTGRHYHFRAHY--PFFYAAGIVQTGMYLMF 432
            + W  GI+ +   A++   W L    Y+ G   F    W FSE+LE + V+PQLL+ R +T    +   Y++ +G Y  L +L+W+  G       HY  P  +  G +QT + + F
Sbjct:  102 KAWKFGIYCAGGSAILAPFWFLIFKKYILGTNWFLQILWTFSEILESVCVIPQLLLLRQTTVPTVIDSFYLVTLGTYRFLYILNWIVRGAT---EKHYIDPTSWVFGTIQTALMIDF 215          
BLAST of mRNA_E-fasciculatus_F_contig1522.3692.1 vs. uniprot
Match: A0A2G5B5G3_COERN (ER lumen protein retaining receptor n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5B5G3_COERN)

HSP 1 Score: 57.0 bits (136), Expect = 1.060e-5
Identity = 44/129 (34.11%), Postives = 62/129 (48.06%), Query Frame = 1
Query:   43 LKYRPCLKASYDPSLDCFRVWMHGIFPSFVLAVIVYTWHLTQPYYVSGATHFAWIFSEVLEPLAVVPQLLVSRGSTDAGQLGWTYVILMGIYPPLCVLSWVDTGRHYHFRAHYPFF--YAAGIVQTGMY 423
            L Y P LKASYD SLD FRV     F + V     + + + +           W FS  LE LA++PQL     + +A  +   YV  +G Y  L +L+W      Y+   +Y  +  + AGIVQT +Y
Sbjct:   77 LMYSP-LKASYDKSLDSFRVEYIIAFAAVVALAFPHKYSVVE---------VLWSFSIYLESLAIIPQLFQMTRTGEADNITSHYVFALGGYRALYMLNWF---YRYYTEDNYVDYISWIAGIVQTALY 192          
BLAST of mRNA_E-fasciculatus_F_contig1522.3692.1 vs. uniprot
Match: A0A8E2EYT9_9PEZI (Uncharacterized protein n=1 Tax=Glonium stellatum TaxID=574774 RepID=A0A8E2EYT9_9PEZI)

HSP 1 Score: 58.2 bits (139), Expect = 1.360e-5
Identity = 33/115 (28.70%), Postives = 58/115 (50.43%), Query Frame = 1
Query:   97 RVWMHGIFPSFVLAVIVYTWHLTQPYYVSGAT---HFAWIFSEVLEPLAVVPQLLVSRGSTDAGQLGWTYVILMGIYPPLCVLSWVDTGRHYHFRAHYPFFYAAGIVQTGMYLMF 432
            + W  G++     A++   W+L    YV+G +      W+FSE+LE + V+PQLL+ R +T    +   Y++ +G Y  L +L+W+      H     P  +  G +QT + + F
Sbjct:  100 KAWKFGVYCFVGSAILTPIWYLIFKKYVTGISTTLKVLWVFSEILESVCVIPQLLLLRQTTVPTVIDSFYLVTLGTYRFLYILNWITRSATEHDYKD-PTSWTFGTIQTALIIDF 213          
BLAST of mRNA_E-fasciculatus_F_contig1522.3692.1 vs. uniprot
Match: UPI001B3796ED (uncharacterized protein n=1 Tax=Cucurbitaria berberidis CBS 394.84 TaxID=1168544 RepID=UPI001B3796ED)

HSP 1 Score: 58.2 bits (139), Expect = 1.420e-5
Identity = 35/115 (30.43%), Postives = 60/115 (52.17%), Query Frame = 1
Query:   97 RVWMHGIFPSFVLAVIVYTWHLTQPYYVSGATHFA---WIFSEVLEPLAVVPQLLVSRGSTDAGQLGWTYVILMGIYPPLCVLSWVDTGRHYHFRAHYPFFYAAGIVQTGMYLMF 432
            + W  G++      V+   W+L   ++V G + F    W+FSE+LE + VVPQLL+ R +T    +   Y++ +G Y  + VL+W+  G +    A  P  +  G +QT + + F
Sbjct:   97 KAWKFGMYGLLGSVVVAPFWYLLFKHWVIGHSTFLKMLWVFSEILESVCVVPQLLLLRQTTVPTVIDSFYLVTLGTYRFMYVLNWIVRGANEKSYAD-PTSWVWGSIQTALMIDF 210          
BLAST of mRNA_E-fasciculatus_F_contig1522.3692.1 vs. uniprot
Match: A0A2T2NHL9_CORCC (ER lumen protein retaining receptor n=1 Tax=Corynespora cassiicola Philippines TaxID=1448308 RepID=A0A2T2NHL9_CORCC)

HSP 1 Score: 57.8 bits (138), Expect = 1.850e-5
Identity = 35/115 (30.43%), Postives = 59/115 (51.30%), Query Frame = 1
Query:   97 RVWMHGIFPSFVLAVIVYTWHLTQPYYVSGATHFA---WIFSEVLEPLAVVPQLLVSRGSTDAGQLGWTYVILMGIYPPLCVLSWVDTGRHYHFRAHYPFFYAAGIVQTGMYLMF 432
            + W  G++      V+   W+L    +V G + F    W+FSE+LE ++V+PQLL+ R +T    L   Y++ +G Y  L +L+W+  G      A  P  +  G +QT + + F
Sbjct:   97 KAWKFGMYCLLGSIVLAPIWYLIFKKWVIGTSTFLMVLWVFSEILESVSVIPQLLLLRQTTVPTVLDSFYLVALGTYRFLYILNWITRGAKEKDYAD-PTSWVWGTIQTALMIDF 210          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1522.3692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7G6T5_ECTSI5.040e-6057.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRR1_ECTSI1.000e-3855.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LJM2_ECTSI3.820e-1735.00PGPS/D6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJM2... [more]
A0A7S2XZQ8_9STRA2.690e-1335.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6A6E844_9PEZI4.570e-630.43Uncharacterized protein n=1 Tax=Zopfia rhizophila ... [more]
A0A8E2JCD6_9PEZI1.030e-530.77ER lumen protein retaining receptor n=1 Tax=Lepido... [more]
A0A2G5B5G3_COERN1.060e-534.11ER lumen protein retaining receptor n=1 Tax=Coeman... [more]
A0A8E2EYT9_9PEZI1.360e-528.70Uncharacterized protein n=1 Tax=Glonium stellatum ... [more]
UPI001B3796ED1.420e-530.43uncharacterized protein n=1 Tax=Cucurbitaria berbe... [more]
A0A2T2NHL9_CORCC1.850e-530.43ER lumen protein retaining receptor n=1 Tax=Coryne... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1522contigE-fasciculatus_F_contig1522:1786..6327 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score201.1
Seed ortholog evalue4.9e-49
Seed eggNOG ortholog2880.D7G6T5
Preferred nameERD2A
KEGG koko:K08235,ko:K10949
KEGG Pathwayko05110,map05110
GOsGO:0002218,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005801,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0010204,GO:0012505,GO:0016020,GO:0023052,GO:0031347,GO:0031349,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0080134,GO:0098827
EggNOG free text desc.ER retention sequence binding
EggNOG OGsCOG5196@1,KOG3106@2759
EC2.4.1.207
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Hectar predicted targeting categorysignal anchor
Exons6
Model size1367
Cds size588
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1522.3692.1prot_E-fasciculatus_F_contig1522.3692.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1522 2603..6288 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928004.545561-UTR-E-fasciculatus_F_contig1522:1785..23271622928004.545561-UTR-E-fasciculatus_F_contig1522:1785..2327Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1522 1786..2327 -
1695995784.809542-UTR-E-fasciculatus_F_contig1522:1785..23271695995784.809542-UTR-E-fasciculatus_F_contig1522:1785..2327Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1522 1786..2327 -
1622928004.5594788-UTR-E-fasciculatus_F_contig1522:2404..26021622928004.5594788-UTR-E-fasciculatus_F_contig1522:2404..2602Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1522 2405..2602 -
1695995784.8203716-UTR-E-fasciculatus_F_contig1522:2404..26021695995784.8203716-UTR-E-fasciculatus_F_contig1522:2404..2602Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1522 2405..2602 -
1622928004.6878266-UTR-E-fasciculatus_F_contig1522:6288..63271622928004.6878266-UTR-E-fasciculatus_F_contig1522:6288..6327Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1522 6289..6327 -
1695995784.8794012-UTR-E-fasciculatus_F_contig1522:6288..63271695995784.8794012-UTR-E-fasciculatus_F_contig1522:6288..6327Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1522 6289..6327 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928004.572782-CDS-E-fasciculatus_F_contig1522:2602..27771622928004.572782-CDS-E-fasciculatus_F_contig1522:2602..2777Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1522 2603..2777 -
1695995784.8287926-CDS-E-fasciculatus_F_contig1522:2602..27771695995784.8287926-CDS-E-fasciculatus_F_contig1522:2602..2777Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1522 2603..2777 -
1622928004.5863318-CDS-E-fasciculatus_F_contig1522:3243..34061622928004.5863318-CDS-E-fasciculatus_F_contig1522:3243..3406Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1522 3244..3406 -
1695995784.8372345-CDS-E-fasciculatus_F_contig1522:3243..34061695995784.8372345-CDS-E-fasciculatus_F_contig1522:3243..3406Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1522 3244..3406 -
1622928004.5996718-CDS-E-fasciculatus_F_contig1522:5266..53871622928004.5996718-CDS-E-fasciculatus_F_contig1522:5266..5387Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1522 5267..5387 -
1695995784.8455906-CDS-E-fasciculatus_F_contig1522:5266..53871695995784.8455906-CDS-E-fasciculatus_F_contig1522:5266..5387Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1522 5267..5387 -
1622928004.612844-CDS-E-fasciculatus_F_contig1522:5789..58701622928004.612844-CDS-E-fasciculatus_F_contig1522:5789..5870Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1522 5790..5870 -
1695995784.8559391-CDS-E-fasciculatus_F_contig1522:5789..58701695995784.8559391-CDS-E-fasciculatus_F_contig1522:5789..5870Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1522 5790..5870 -
1622928004.674716-CDS-E-fasciculatus_F_contig1522:6240..62881622928004.674716-CDS-E-fasciculatus_F_contig1522:6240..6288Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1522 6241..6288 -
1695995784.8682342-CDS-E-fasciculatus_F_contig1522:6240..62881695995784.8682342-CDS-E-fasciculatus_F_contig1522:6240..6288Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1522 6241..6288 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1522.3692.1

>prot_E-fasciculatus_F_contig1522.3692.1 ID=prot_E-fasciculatus_F_contig1522.3692.1|Name=mRNA_E-fasciculatus_F_contig1522.3692.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=196bp
MLKYRPCLKASYDPSLDCFRVWMHGIFPSFVLAVIVYTWHLTQPYYVSGA
THFAWIFSEVLEPLAVVPQLLVSRGSTDAGQLGWTYVILMGIYPPLCVLS
WVDTGRHYHFRAHYPFFYAAGIVQTGMYLMFLVTRRVRASPHSPPDETGP
VDTMDSTSSARDRLLRDQDSDTDSSPNRERGLDGELRGESSRKAV*
back to top

mRNA from alignment at E-fasciculatus_F_contig1522:1786..6327-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1522.3692.1 ID=mRNA_E-fasciculatus_F_contig1522.3692.1|Name=mRNA_E-fasciculatus_F_contig1522.3692.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4542bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1522:1786..6327- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGGCAACGGACATCATCCCGACGGCCCTAACCGTTGGTATGCTAAAGTA CCGACCGTGTCTCAAGGCTTCATACGACCCCTCCTTGGTGAGTGGGAAGA ATAAGCTGACCAACATTTCTGCGCGTCTCAGGTGGCGCGTGTCCGTTTCC GTTAGTGTTCTTTCTGCCTTGACGTATGACATCCAGACGTCCCCCCTGCT AACGAGTTTCGGCATGTATCAATAGCATGTCCCGGAAAGAACTCGTGCAG AGAAAATATCGTTCTGTAAAACACGAATGTCCTGTATGTCTATTGTAGAA TTCACAGTAGTAGTTGTATGAATCCTATCTCTTCTGTCGTATTATTCATT GCCTACGCTCCCGTTCGCTCTCCGTGTTCTCTCCCATTTTTCTCGATTTC GGTTTCTGTCCCTGTCGCCCTCTGGCTTCATTGGCCCGCCTCTGATTTCG TGGGAAGGACTGCTTCCGTGTGTGGATGCACGGGATTTTCCCGAGCTTTG TTCTGGCTGTGATAGTCTATACATGGCACCTGACCCAGGTTTGTTGTTTG TAGGCATGACGACTAGTGGTTGGTTGAAACGGACGGACAAAGTATAGGCC GCACGACTTTGAAAGGAAGGCGGCATGCTTCAGAGTCATGACCGCGACAT CAAGCGGCCCTGGCCTGTAACTCGGTTACCTTCTTGATAACGCCAAGCCG AAACATGATGAAATTGACATATCTTTGTACACACCGAAAACCTCATTAGC GAAAACAGCCGAACGCCTATTGGTGGTTCACGTACTGAATGACGAGTTGC CGAGCCCACGCGTTGGCGGAGAAGCTTTGAACGTTCTCGATATTTACTGC GCTCTCAGCCTTTCGCGCCCGAAGCTATCTGCTGGACTTCGAAGCATCCG AATCCTCTTCGGGGTTTTGTTCTGCATGCCACGAACACAGCCGTACTACG TATCTGGTGCGACCCACTTTGCGTGGATCTTCTCGGAAGTGCTGGAGCCG CTGGCGGTCGTGCCACAGTTGCTTGTGTCCCGGGGCAGCACGGACGCCGG GCAACTAGGATGTGAGTGAGTGACAACAGGATTGTTTGCCTTACGACGCG GCAAGGCGGAGGGTTTATTTGTTTTCGTACGAGGGCAGCCGGGGAGCCCG AGGAGGTTCGTTCTTCAGACTGGAACATAGAAATTGTTGACAACCTGCTT GCGGACGCCTGATCTATACAAGGCGTTGGAAGCGAGATCGAATTCTTGAG CTTCCTCGGTGGCCAGCACCATTTGAAGGCTGGGATACCAGGCGGAGATA GGTGTTGTAGAGTGGGGCACACACAAACGTGTTTGGTATCGCGAGCAACC CATTCTATTCAAGCGAACCGACCACTTCTCCATCAGCCTGCCCCCAGCTG AGATGCACAAGGAAGAAGCCGCGTTCCGTCGAACTCTTCGCATCTGCCCG CAAAAGGACGCAGAGGACACAAAGGACATCACAATGAACCAACACTAATA TGCCTGCTCTGTTTTGAAACCCTAACATGCCTCTTGTAATTTGTACACCC CCCTCCGAAAGAAACGAAGGCGCCACCTTCCAACCGTGGCAAATTGGGAC AGGCTTGTGAACGACCGCATTTCAGCAGTGTATCGGTAACAGCTGCAGTA GAACTCCCCACTTGCCGGACTCACCCCATCGTGCTGACGGCTCCAACTCA AACGAGTGGATTGAATGCAAAATGCAGCCCAGCATCTGTTGCTGGTTTTG GAAGAATGTTTTTTGTTTTCGAACACATGTCGATCCTCCAAATGTCCACG AAAATGTGCGTCATCCCATAATATTTTTGGCACTCATTGCGTATGAATTA TATCGATCCGAAATCACGAATCCATTGTACGGTGAGCGCGCGCAACAGGT CTGACATTTTTTGGATTGACCAAACATCGCTCATGGGCCAACCGCCACTC CGTCATTCGGTGCGCGCGCGCAATGTTGTTGTCTTCACACAAATAAAAAG TGATTTGACCTCTGGATTGTATTTGTGCGCGAACTCCCTCCCCACTCGCT CACAGCACACTCTCCATCCCACAGCCCAGCAGACCCACCTATAACACGCG GCAGAACCTCACCCTTAGGTCACTTCCCCGTGCGTTGAACAAACACTGCA CAGCAAATAGTGGTAGGGACAGGGGTTCGTCGTCGTTAAGATCTGTTTCT TCGTCAAAGACTCTCCGAAGCTACAAGTCGAAGGAGTGTCATGCCCTCTG TAGGTGATCGTCGTCATCGCTTTCCCCATCGTCGTTTAGAGGTCTCCCTC TCATTGTCCGGTGAAGGTTCTTCTTGTTCTTGTTCTCACCAGGGGAGGGC TCGGAGCAGCAGCCTTGGCTTTCCCCTTAGACGAACACTCCACGTGGAGC GATCTTTACGTCTCTCTACATAGTTTCTCCACCGTGAAAATGATGCGGCG AAGCAATGTGCAGTGTAAGATTTTGTGTAACCGTTTTATTTGCAGCAAAC CAACGTCTGGTTCTTATGGGACCGAAACAAAGGTCCAAAATAGCTGACAG TCATCGGAGGGGAAATCGACATTATTCGAGGCATGTAAAAGAAAATAGTC CTCCGGCCTCACAAGCACTGCTCCACACTTGTCATCCATCACCCTGATGT AACCTGCACATGTTTTTGTACACTCCAAGTGAGACGGCAATACCATCCAC TCCACCCTAAACATATACACTTTGCGAACGACGTTCCTATCCAAGTTATT GTAGGTTGCCAAGAAGAACCGGAAAATGTTCATGTAATTCTTACTTGGCT TTCCGTGGTCGAGAAGATTCTGCACCCGCGCGCGCCAAGTAGCACCCCCG ACCCTTGCCGCCGGCACACCTTGCCGAATTCCACACGCTGTTGCACCGGA CCTCTACGATGGACTACGCAGGGACGTATGTGATCCTGATGGGCATCTAC CCGCCGCTCTGTGTTCTCAGCTGGGTGGATACAGGCCGCCACTACCATTT CCGCGCACACTATCCGTTTTTCTATGCGGCGGGAATAGTGCAGACGGGGA TGTACCTCATGTTCCTTGTGACGCGGAGAGTCAGGTGTGCGCGAGAGTCC CTTCACCGCATGGATTTTCGTGTGCTCTGATGACAAAACAAGATCGTTCC CGTTTTCACGACGGTCGCTTACGTCATCTACTGTTGGGGGGGGGATGGGG TGTACTCATGTCCATGCATGCCGTCGTCGGTAGACTGTTGACCTCGCATC CCTACAGTGCTGGAACAGAGCGATATGCCGGGTTTTTCGCCGGCCCAGGA TGAATCAGAAGCTGATCATCACCATTGCGCTTCCTGTGCCAATCCAGATA TGCTATGGGCGGATTGATTGGGCATCCTGGCTAACCAACAGTTTCACATT CGGCAGGCACGACCATACAAGTACCGCAAGGGAGTTCGATCGCGAGGGGA GGGGGATACTTCGATGTGTCACCCTCACTACCGCGACTTGGTCCAGCTGC GGGACTCAACCTCTCATGCCTATCTCCATCCCGTTTTCATTCACGCGCAG AGCTTCACCGCACTCGCCTCCCGACGAGACCGGTCCTGTGGACACCATGG ATTCAACCTCCTCTGCTCGGGATCGGCTACTACGCGACCAGGACTCAGAC ACAGACTCAAGCCCCAACCGTGAGCGCGGTTTGGACGGTGAATTACGTGG AGAAAGCTCTCGGAAAGCGGTGTAGCGGATGCCGTAAGCGCGGCGTCACC ACGCGGTCATCATCAGCAAGGCGACGAAACCGTGCTCAAGATTGAGAGTG TCCTGCTTCGGGAGCGTGGTCAGGGACTCTCATTTCACGCTTGTGGCCGG AAGGCGGCTCAAGACGCTGCCAGCGATGAAACAAGCACTGTCGCCGCCGC GGCCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCGATGGCGAGA TGAGAGGGAGCCTAGGGGTGTACCTCGTCTAGACTAAGGAGAAACGCCTG GGATACAAACGTGTCACCCATATATTTACACTCATAAAGCTTGTGTTCAG GTTGGTAGAGGGGAAGTCGTCTGTGGACTTGAGTTTGAGGCTGAAAAAAT CAATGTCGTCGGAGAGCGTGAGGAGAAGGATTTTCAAGGAGCATGGACCA GTGGCACAGAGGCCGTAATTCGTTCCGACGTAGATTGCATTAAATGTGTT TAGGGATGGTGAAAGCGAAGGATAAGGATATTGCACGGATCAAGACGCAG GAGCACATGTGCCCTCGACGAATATTTCGATATTTTTAGACCCACAAAGT TTTTGTCGGTGTGAGATTGTCTAGGGACCGGTCGCCCCCGTTGTTGTGGT CGTTGTCTTCATATTAAAAAACTCGTGATCCGCGTAAAGCTAGGAGTAGC AAATTGCAGTGCGATAATCTCTCCGGCGGGAAACTGCTTCGAAAATTGCA TTGGTTCATCCGTACGAGTGTAAACACGTTGGCTTCTTGTTCGGGGAGGC AAAGAGACGGTTGACGCAGTCGTTCGCGTGACAATACTTCAG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1522:1786..6327-

>mRNA_E-fasciculatus_F_contig1522.3692.1 ID=mRNA_E-fasciculatus_F_contig1522.3692.1|Name=mRNA_E-fasciculatus_F_contig1522.3692.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1176bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1522:1786..6327- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTAAAGTACCGACCGTGTCTCAAGGCTTCATACGACCCCTCCTTGAT
GCTAAAGTACCGACCGTGTCTCAAGGCTTCATACGACCCCTCCTTGGACT
GCTTCCGTGTGTGGATGCACGGGATTTTCCCGAGCTTTGTTCTGGCTGTG
ATAGTCTATACATGGCACCTGACCCAGGACTGCTTCCGTGTGTGGATGCA
CGGGATTTTCCCGAGCTTTGTTCTGGCTGTGATAGTCTATACATGGCACC
TGACCCAGCCGTACTACGTATCTGGTGCGACCCACTTTGCGTGGATCTTC
TCGGAAGTGCTGGAGCCGCTGGCGGTCGTGCCACAGTTGCTTGTGTCCCG
GGGCAGCACGGACGCCGGGCAACTAGGATCCGTACTACGTATCTGGTGCG
ACCCACTTTGCGTGGATCTTCTCGGAAGTGCTGGAGCCGCTGGCGGTCGT
GCCACAGTTGCTTGTGTCCCGGGGCAGCACGGACGCCGGGCAACTAGGAT
GGACGTATGTGATCCTGATGGGCATCTACCCGCCGCTCTGTGTTCTCAGC
TGGGTGGATACAGGCCGCCACTACCATTTCCGCGCACACTATCCGTTTTT
CTATGCGGCGGGAATAGTGCAGACGGGGATGTACCTCATGTTCCTTGTGA
CGCGGAGAGTCAGGGACGTATGTGATCCTGATGGGCATCTACCCGCCGCT
CTGTGTTCTCAGCTGGGTGGATACAGGCCGCCACTACCATTTCCGCGCAC
ACTATCCGTTTTTCTATGCGGCGGGAATAGTGCAGACGGGGATGTACCTC
ATGTTCCTTGTGACGCGGAGAGTCAGAGCTTCACCGCACTCGCCTCCCGA
CGAGACCGGTCCTGTGGACACCATGGATTCAACCTCCTCTGCTCGGGATC
GGCTACTACGCGACCAGGACTCAGACACAGACTCAAGCCCCAACCGTGAG
CGCGGTTTGGACGGTGAATTACGTGGAGAAAGCTCTCGGAAAGCGGTGTA
GAGCTTCACCGCACTCGCCTCCCGACGAGACCGGTCCTGTGGACACCATG
GATTCAACCTCCTCTGCTCGGGATCGGCTACTACGCGACCAGGACTCAGA
CACAGACTCAAGCCCCAACCGTGAGCGCGGTTTGGACGGTGAATTACGTG
GAGAAAGCTCTCGGAAAGCGGTGTAG
back to top