mRNA_E-fasciculatus_F_contig1516.3654.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1516.3654.1 vs. uniprot
Match: D7FJB2_ECTSI (Sulfotransfer_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJB2_ECTSI) HSP 1 Score: 258 bits (658), Expect = 4.180e-75 Identity = 133/163 (81.60%), Postives = 144/163 (88.34%), Query Frame = 1
Query: 292 NKVALVVTLCVLLGVLMWVGSGGLDIQPSSSSDESQHGATPNVSGGEGGLKQNTSADRPADAFEGELDVLLKRAATSKGLTESETEEARVAATNAVREALRKPGDLPPRSLDGILSASCGLQVEGLPLYHDRGQTCCKTIQKPPPQQQAPSNETGPQGRRGLE 780
+VALVVTLCVLLGVLMWVG GGLDIQPSSSSDE+QHG TPN SG EGGLK SADR ADAFEGELDV+LK++A S+GL +SE EEARVAAT+AVREALRKPGDLPPRS+DGILSASC LQVEGLPLYHD+GQTCCK QKPP QQQA S + GPQGRRGLE
Sbjct: 29 QQVALVVTLCVLLGVLMWVGGGGLDIQPSSSSDEAQHGMTPNASGREGGLKPK-SADRQADAFEGELDVVLKKSAASRGLNDSEIEEARVAATDAVREALRKPGDLPPRSIDGILSASCDLQVEGLPLYHDKGQTCCKAAQKPPAQQQAHSKDNGPQGRRGLE 190
BLAST of mRNA_E-fasciculatus_F_contig1516.3654.1 vs. uniprot
Match: A0A6H5L6E8_9PHAE (Sulfotransfer_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6E8_9PHAE) HSP 1 Score: 219 bits (557), Expect = 1.200e-60 Identity = 113/147 (76.87%), Postives = 124/147 (84.35%), Query Frame = 1
Query: 340 MWVGSGGLDIQPSSSSDESQHGATPNVSGGEGGLKQNTSADRPADAFEGELDVLLKRAATSKGLTESETEEARVAATNAVREALRKPGDLPPRSLDGILSASCGLQVEGLPLYHDRGQTCCKTIQKPPPQQQAPSNETGPQGRRGLE 780
MWVG GGLDIQPSSSSDE+QHG TPN SG EGGLK T ADRPADAF+ ELDV+LKR+A S GL +SE EEARVAA +AVREALRKPG LPPRS+DG+LSASC LQV+GLPLYHD+GQTCCK K P QQQA S + GPQGRRGLE
Sbjct: 1 MWVGGGGLDIQPSSSSDEAQHGTTPNASGREGGLKP-TLADRPADAFDCELDVVLKRSAASSGLNDSEIEEARVAARDAVREALRKPGGLPPRSVDGVLSASCNLQVKGLPLYHDKGQTCCKAAHKRPAQQQAHSKDNGPQGRRGLE 146
BLAST of mRNA_E-fasciculatus_F_contig1516.3654.1 vs. uniprot
Match: A0A7S0K3V0_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0K3V0_CAFRO) HSP 1 Score: 71.2 bits (173), Expect = 5.320e-10 Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 3
Query: 888 CLPSFIIAGTQKSGTTALTGILEKHPQVMMAERKELHFFDHKTPSQATAAGYASSFPR 1061
CLPS +I G QKSGTTAL +L ++P ++MA KE HFFDHK+P +A+ +GY + PR
Sbjct: 111 CLPSLVIIGAQKSGTTALAALLSQNPSILMAAGKETHFFDHKSP-KASLSGYLALLPR 167
BLAST of mRNA_E-fasciculatus_F_contig1516.3654.1 vs. uniprot
Match: A0A7S3Y7U4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y7U4_HETAK) HSP 1 Score: 67.8 bits (164), Expect = 5.700e-10 Identity = 32/56 (57.14%), Postives = 37/56 (66.07%), Query Frame = 3
Query: 888 CLPSFIIAGTQKSGTTALTGILEKHPQVMMAERKELHFFDHKTPSQATAAGYASSF 1055
CLP ++AGTQKSG+TALTG L +HP V MA+ KELHFFD K A Y F
Sbjct: 8 CLPGLVVAGTQKSGSTALTGYLLQHPNVQMAKMKELHFFDDKRNMDKGLAHYLEMF 63
BLAST of mRNA_E-fasciculatus_F_contig1516.3654.1 vs. uniprot
Match: A0A7S2B2Q1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B2Q1_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 1.200e-9 Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 3
Query: 888 CLPSFIIAGTQKSGTTALTGILEKHPQVMMAERKELHFFD 1007
CLP+FIIAGTQKSG+TALT L HPQV M++ KELHFFD
Sbjct: 9 CLPTFIIAGTQKSGSTALTAYLLAHPQVSMSQAKELHFFD 48
BLAST of mRNA_E-fasciculatus_F_contig1516.3654.1 vs. uniprot
Match: A0A7S2SV20_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV20_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 5.980e-7 Identity = 30/44 (68.18%), Postives = 32/44 (72.73%), Query Frame = 3
Query: 888 CLPSFIIAGTQKSGTTALTGILEKHPQVMMAERKELHFFDHKTP 1019
CLP+FIIAGTQKSG+TAL L HPQV M KELHFFD P
Sbjct: 181 CLPTFIIAGTQKSGSTALATYLLAHPQVSMGYSKELHFFDKPRP 224
BLAST of mRNA_E-fasciculatus_F_contig1516.3654.1 vs. uniprot
Match: UPI001C62CA8A (sulfotransferase domain-containing protein n=1 Tax=Marinobacter sp. F4218 TaxID=2862868 RepID=UPI001C62CA8A) HSP 1 Score: 60.1 bits (144), Expect = 9.540e-7 Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 3
Query: 891 LPSFIIAGTQKSGTTALTGILEKHPQVMMAERKELHFFDHKTPSQATAAGY 1043
L +F++AGTQK GT+AL L +HPQ+ MA RKE+HFFD++ AA Y
Sbjct: 2 LVNFLVAGTQKGGTSALDAYLREHPQICMANRKEVHFFDNEAAFANGAANY 52
BLAST of mRNA_E-fasciculatus_F_contig1516.3654.1 vs. uniprot
Match: A0A2D7IT46_9PROT (Sulfotransferase n=2 Tax=Hyphomonadaceae TaxID=69657 RepID=A0A2D7IT46_9PROT) HSP 1 Score: 59.7 bits (143), Expect = 1.440e-6 Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 3
Query: 900 FIIAGTQKSGTTALTGILEKHPQVMMAERKELHFFDHKTPSQATAAGYA 1046
F+IAG QK+GTT+L G L +HPQ+ MA +KE+HFFD P+ A +A
Sbjct: 16 FLIAGVQKAGTTSLDGYLRQHPQISMARKKEVHFFDKAPPTGVDALDWA 64
BLAST of mRNA_E-fasciculatus_F_contig1516.3654.1 vs. uniprot
Match: R8B5V5_9GAMM (Sulfotransferase n=1 Tax=Marinobacter lipolyticus SM19 TaxID=1318628 RepID=R8B5V5_9GAMM) HSP 1 Score: 58.5 bits (140), Expect = 3.160e-6 Identity = 27/58 (46.55%), Postives = 40/58 (68.97%), Query Frame = 3
Query: 891 LPSFIIAGTQKSGTTALTGILEKHPQVMMAERKELHFFDHKTPSQATAAGYASSFPRY 1064
L +F++AGTQK GT+AL L +HPQ+ MA++KE+HFFD++ A +A+ P Y
Sbjct: 2 LVNFLVAGTQKGGTSALDAYLREHPQICMADKKEVHFFDNE-------AAFANGSPDY 52
BLAST of mRNA_E-fasciculatus_F_contig1516.3654.1 vs. uniprot
Match: A0A7S1C3G5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C3G5_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 4.660e-6 Identity = 28/71 (39.44%), Postives = 38/71 (53.52%), Query Frame = 3
Query: 843 RTTQRAEVVGGNEVSCLPSFIIAGTQKSGTTALTGILEKHPQVMMAERKELHFFDHKTPSQATAAGYASSF 1055
R ++R +V+ CLPSF++ G QKSG+TA+ HP V +KELHFFD + GY F
Sbjct: 363 RPSKRTDVMQPGGTRCLPSFVVIGAQKSGSTAIFSYFLHHPAVNAPRKKELHFFDFSRRMASGITGYLQDF 433 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1516.3654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1516.3654.1 >prot_E-fasciculatus_F_contig1516.3654.1 ID=prot_E-fasciculatus_F_contig1516.3654.1|Name=mRNA_E-fasciculatus_F_contig1516.3654.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=223bp MRSRGKPDAPGADFASHMPRTSPDEHPVRVVPLESRRWRNKVALVVTLCVback to top mRNA from alignment at E-fasciculatus_F_contig1516:392..3954- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1516.3654.1 ID=mRNA_E-fasciculatus_F_contig1516.3654.1|Name=mRNA_E-fasciculatus_F_contig1516.3654.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3563bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1516:392..3954- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1516:392..3954- >mRNA_E-fasciculatus_F_contig1516.3654.1 ID=mRNA_E-fasciculatus_F_contig1516.3654.1|Name=mRNA_E-fasciculatus_F_contig1516.3654.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1338bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1516:392..3954- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |