mRNA_E-fasciculatus_F_contig1516.3654.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1516.3654.1
Unique NamemRNA_E-fasciculatus_F_contig1516.3654.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1516.3654.1 vs. uniprot
Match: D7FJB2_ECTSI (Sulfotransfer_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJB2_ECTSI)

HSP 1 Score: 258 bits (658), Expect = 4.180e-75
Identity = 133/163 (81.60%), Postives = 144/163 (88.34%), Query Frame = 1
Query:  292 NKVALVVTLCVLLGVLMWVGSGGLDIQPSSSSDESQHGATPNVSGGEGGLKQNTSADRPADAFEGELDVLLKRAATSKGLTESETEEARVAATNAVREALRKPGDLPPRSLDGILSASCGLQVEGLPLYHDRGQTCCKTIQKPPPQQQAPSNETGPQGRRGLE 780
             +VALVVTLCVLLGVLMWVG GGLDIQPSSSSDE+QHG TPN SG EGGLK   SADR ADAFEGELDV+LK++A S+GL +SE EEARVAAT+AVREALRKPGDLPPRS+DGILSASC LQVEGLPLYHD+GQTCCK  QKPP QQQA S + GPQGRRGLE
Sbjct:   29 QQVALVVTLCVLLGVLMWVGGGGLDIQPSSSSDEAQHGMTPNASGREGGLKPK-SADRQADAFEGELDVVLKKSAASRGLNDSEIEEARVAATDAVREALRKPGDLPPRSIDGILSASCDLQVEGLPLYHDKGQTCCKAAQKPPAQQQAHSKDNGPQGRRGLE 190          
BLAST of mRNA_E-fasciculatus_F_contig1516.3654.1 vs. uniprot
Match: A0A6H5L6E8_9PHAE (Sulfotransfer_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6E8_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 1.200e-60
Identity = 113/147 (76.87%), Postives = 124/147 (84.35%), Query Frame = 1
Query:  340 MWVGSGGLDIQPSSSSDESQHGATPNVSGGEGGLKQNTSADRPADAFEGELDVLLKRAATSKGLTESETEEARVAATNAVREALRKPGDLPPRSLDGILSASCGLQVEGLPLYHDRGQTCCKTIQKPPPQQQAPSNETGPQGRRGLE 780
            MWVG GGLDIQPSSSSDE+QHG TPN SG EGGLK  T ADRPADAF+ ELDV+LKR+A S GL +SE EEARVAA +AVREALRKPG LPPRS+DG+LSASC LQV+GLPLYHD+GQTCCK   K P QQQA S + GPQGRRGLE
Sbjct:    1 MWVGGGGLDIQPSSSSDEAQHGTTPNASGREGGLKP-TLADRPADAFDCELDVVLKRSAASSGLNDSEIEEARVAARDAVREALRKPGGLPPRSVDGVLSASCNLQVKGLPLYHDKGQTCCKAAHKRPAQQQAHSKDNGPQGRRGLE 146          
BLAST of mRNA_E-fasciculatus_F_contig1516.3654.1 vs. uniprot
Match: A0A7S0K3V0_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0K3V0_CAFRO)

HSP 1 Score: 71.2 bits (173), Expect = 5.320e-10
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 3
Query:  888 CLPSFIIAGTQKSGTTALTGILEKHPQVMMAERKELHFFDHKTPSQATAAGYASSFPR 1061
            CLPS +I G QKSGTTAL  +L ++P ++MA  KE HFFDHK+P +A+ +GY +  PR
Sbjct:  111 CLPSLVIIGAQKSGTTALAALLSQNPSILMAAGKETHFFDHKSP-KASLSGYLALLPR 167          
BLAST of mRNA_E-fasciculatus_F_contig1516.3654.1 vs. uniprot
Match: A0A7S3Y7U4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y7U4_HETAK)

HSP 1 Score: 67.8 bits (164), Expect = 5.700e-10
Identity = 32/56 (57.14%), Postives = 37/56 (66.07%), Query Frame = 3
Query:  888 CLPSFIIAGTQKSGTTALTGILEKHPQVMMAERKELHFFDHKTPSQATAAGYASSF 1055
            CLP  ++AGTQKSG+TALTG L +HP V MA+ KELHFFD K       A Y   F
Sbjct:    8 CLPGLVVAGTQKSGSTALTGYLLQHPNVQMAKMKELHFFDDKRNMDKGLAHYLEMF 63          
BLAST of mRNA_E-fasciculatus_F_contig1516.3654.1 vs. uniprot
Match: A0A7S2B2Q1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B2Q1_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.200e-9
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 3
Query:  888 CLPSFIIAGTQKSGTTALTGILEKHPQVMMAERKELHFFD 1007
            CLP+FIIAGTQKSG+TALT  L  HPQV M++ KELHFFD
Sbjct:    9 CLPTFIIAGTQKSGSTALTAYLLAHPQVSMSQAKELHFFD 48          
BLAST of mRNA_E-fasciculatus_F_contig1516.3654.1 vs. uniprot
Match: A0A7S2SV20_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV20_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 5.980e-7
Identity = 30/44 (68.18%), Postives = 32/44 (72.73%), Query Frame = 3
Query:  888 CLPSFIIAGTQKSGTTALTGILEKHPQVMMAERKELHFFDHKTP 1019
            CLP+FIIAGTQKSG+TAL   L  HPQV M   KELHFFD   P
Sbjct:  181 CLPTFIIAGTQKSGSTALATYLLAHPQVSMGYSKELHFFDKPRP 224          
BLAST of mRNA_E-fasciculatus_F_contig1516.3654.1 vs. uniprot
Match: UPI001C62CA8A (sulfotransferase domain-containing protein n=1 Tax=Marinobacter sp. F4218 TaxID=2862868 RepID=UPI001C62CA8A)

HSP 1 Score: 60.1 bits (144), Expect = 9.540e-7
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 3
Query:  891 LPSFIIAGTQKSGTTALTGILEKHPQVMMAERKELHFFDHKTPSQATAAGY 1043
            L +F++AGTQK GT+AL   L +HPQ+ MA RKE+HFFD++      AA Y
Sbjct:    2 LVNFLVAGTQKGGTSALDAYLREHPQICMANRKEVHFFDNEAAFANGAANY 52          
BLAST of mRNA_E-fasciculatus_F_contig1516.3654.1 vs. uniprot
Match: A0A2D7IT46_9PROT (Sulfotransferase n=2 Tax=Hyphomonadaceae TaxID=69657 RepID=A0A2D7IT46_9PROT)

HSP 1 Score: 59.7 bits (143), Expect = 1.440e-6
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 3
Query:  900 FIIAGTQKSGTTALTGILEKHPQVMMAERKELHFFDHKTPSQATAAGYA 1046
            F+IAG QK+GTT+L G L +HPQ+ MA +KE+HFFD   P+   A  +A
Sbjct:   16 FLIAGVQKAGTTSLDGYLRQHPQISMARKKEVHFFDKAPPTGVDALDWA 64          
BLAST of mRNA_E-fasciculatus_F_contig1516.3654.1 vs. uniprot
Match: R8B5V5_9GAMM (Sulfotransferase n=1 Tax=Marinobacter lipolyticus SM19 TaxID=1318628 RepID=R8B5V5_9GAMM)

HSP 1 Score: 58.5 bits (140), Expect = 3.160e-6
Identity = 27/58 (46.55%), Postives = 40/58 (68.97%), Query Frame = 3
Query:  891 LPSFIIAGTQKSGTTALTGILEKHPQVMMAERKELHFFDHKTPSQATAAGYASSFPRY 1064
            L +F++AGTQK GT+AL   L +HPQ+ MA++KE+HFFD++       A +A+  P Y
Sbjct:    2 LVNFLVAGTQKGGTSALDAYLREHPQICMADKKEVHFFDNE-------AAFANGSPDY 52          
BLAST of mRNA_E-fasciculatus_F_contig1516.3654.1 vs. uniprot
Match: A0A7S1C3G5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C3G5_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 4.660e-6
Identity = 28/71 (39.44%), Postives = 38/71 (53.52%), Query Frame = 3
Query:  843 RTTQRAEVVGGNEVSCLPSFIIAGTQKSGTTALTGILEKHPQVMMAERKELHFFDHKTPSQATAAGYASSF 1055
            R ++R +V+      CLPSF++ G QKSG+TA+      HP V    +KELHFFD      +   GY   F
Sbjct:  363 RPSKRTDVMQPGGTRCLPSFVVIGAQKSGSTAIFSYFLHHPAVNAPRKKELHFFDFSRRMASGITGYLQDF 433          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1516.3654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJB2_ECTSI4.180e-7581.60Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
A0A6H5L6E8_9PHAE1.200e-6076.87Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
A0A7S0K3V0_CAFRO5.320e-1055.17Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A7S3Y7U4_HETAK5.700e-1057.14Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2B2Q1_9STRA1.200e-975.00Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2SV20_9STRA5.980e-768.18Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
UPI001C62CA8A9.540e-752.94sulfotransferase domain-containing protein n=1 Tax... [more]
A0A2D7IT46_9PROT1.440e-653.06Sulfotransferase n=2 Tax=Hyphomonadaceae TaxID=696... [more]
R8B5V5_9GAMM3.160e-646.55Sulfotransferase n=1 Tax=Marinobacter lipolyticus ... [more]
A0A7S1C3G5_9STRA4.660e-639.44Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1516contigE-fasciculatus_F_contig1516:392..3954 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score258.8
Seed ortholog evalue2.3e-66
Seed eggNOG ortholog2880.D7FJB2
KEGG koko:K07808
KEGG Pathwayko00534,map00534
GOsGO:0001878,GO:0003674,GO:0003824,GO:0006464,GO:0006477,GO:0006790,GO:0006807,GO:0006950,GO:0006952,GO:0008146,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009987,GO:0016740,GO:0016782,GO:0019538,GO:0036211,GO:0042742,GO:0043170,GO:0043207,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0050896,GO:0051704,GO:0051707,GO:0051923,GO:0071704,GO:0098542,GO:1901564
EggNOG free text desc.heparan sulfate sulfotransferase activity
EggNOG OGsKOG3704@1,KOG3704@2759
EC2.8.2.29
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-12_008190.1
Exons4
Model size1064
Cds size669
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1516.3654.1prot_E-fasciculatus_F_contig1516.3654.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1516 1369..3780 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927996.1166596-UTR-E-fasciculatus_F_contig1516:391..5101622927996.1166596-UTR-E-fasciculatus_F_contig1516:391..510Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1516 392..510 -
1695995782.2600498-UTR-E-fasciculatus_F_contig1516:391..5101695995782.2600498-UTR-E-fasciculatus_F_contig1516:391..510Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1516 392..510 -
1622927996.1312587-UTR-E-fasciculatus_F_contig1516:1266..13681622927996.1312587-UTR-E-fasciculatus_F_contig1516:1266..1368Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1516 1267..1368 -
1695995782.2780888-UTR-E-fasciculatus_F_contig1516:1266..13681695995782.2780888-UTR-E-fasciculatus_F_contig1516:1266..1368Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1516 1267..1368 -
1622927996.1931472-UTR-E-fasciculatus_F_contig1516:3780..39541622927996.1931472-UTR-E-fasciculatus_F_contig1516:3780..3954Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1516 3781..3954 -
1695995782.3223274-UTR-E-fasciculatus_F_contig1516:3780..39541695995782.3223274-UTR-E-fasciculatus_F_contig1516:3780..3954Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1516 3781..3954 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927996.1480737-CDS-E-fasciculatus_F_contig1516:1368..17811622927996.1480737-CDS-E-fasciculatus_F_contig1516:1368..1781Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1516 1369..1781 -
1695995782.2888901-CDS-E-fasciculatus_F_contig1516:1368..17811695995782.2888901-CDS-E-fasciculatus_F_contig1516:1368..1781Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1516 1369..1781 -
1622927996.159075-CDS-E-fasciculatus_F_contig1516:2477..26101622927996.159075-CDS-E-fasciculatus_F_contig1516:2477..2610Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1516 2478..2610 -
1695995782.299164-CDS-E-fasciculatus_F_contig1516:2477..26101695995782.299164-CDS-E-fasciculatus_F_contig1516:2477..2610Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1516 2478..2610 -
1622927996.1765897-CDS-E-fasciculatus_F_contig1516:3657..37801622927996.1765897-CDS-E-fasciculatus_F_contig1516:3657..3780Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1516 3658..3780 -
1695995782.3093207-CDS-E-fasciculatus_F_contig1516:3657..37801695995782.3093207-CDS-E-fasciculatus_F_contig1516:3657..3780Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1516 3658..3780 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1516.3654.1

>prot_E-fasciculatus_F_contig1516.3654.1 ID=prot_E-fasciculatus_F_contig1516.3654.1|Name=mRNA_E-fasciculatus_F_contig1516.3654.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=223bp
MRSRGKPDAPGADFASHMPRTSPDEHPVRVVPLESRRWRNKVALVVTLCV
LLGVLMWVGSGGLDIQPSSSSDESQHGATPNVSGGEGGLKQNTSADRPAD
AFEGELDVLLKRAATSKGLTESETEEARVAATNAVREALRKPGDLPPRSL
DGILSASCGLQVEGLPLYHDRGQTCCKTIQKPPPQQQAPSNETGPQGRRG
LEGGGGGGGGGGGGEVNLCLGC*
back to top

mRNA from alignment at E-fasciculatus_F_contig1516:392..3954-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1516.3654.1 ID=mRNA_E-fasciculatus_F_contig1516.3654.1|Name=mRNA_E-fasciculatus_F_contig1516.3654.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3563bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1516:392..3954- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTCATCCGCACCCCGCACCCCCCTCACCGAACCACTAAAGTCTGCGATG CCCCTCCCGTAGCCTTTCAGGTTCCTGGGTTCCTGGACATGGACAACAGA CTGCAGAGCAAGCAACCACGCCCTAGCCCGGTCGGCCCCACAGCCAGAGG AGAGACAAGGAAGGGCCGTGTTCGATGAGAAGCCGTGGCAAACCGGACGC ACCGGGGGCTGATTTTGCTTCCCACATGCCCAGGACGAGCCCTGATGAGC ATCCCGTCCGAGTTGTGCCGCTAGAATCGAGACGATGGCGGAACAAAGTG AGCTCGGTGATCCGCCGCACGCCGCACAGCAGACGGAAGCGAGACGCCTT TAGAGGTTGGGTGGTGTGTTTGTGTGCTGCTGCTGCTGCTGCACACTTCG TCCGCATACACACGATGCACGTGTATATTCTGTGCATTGCTGATCCTTGA GCGGTTCGTTCTTACATACTGCTTGTTTTGTAGCATTGCGGCTGTTCAGC ACCGTGTCCCACGGTCCCACGTCTTCGCTAATCTACGGTTGGGTGCCAAC AGCTACATGTATCCATATGACTGCTGTACATGCCACACAGCAGCAGCAGC ATTCTTAGACTACAGCCTCTCAACGAAACGCCACTTTACAGGGCGACTGC TGTAGAACAACGTGTTTTGAACCTGGCCCGTTCACACTTCATCTGATACG ATTACGAAATTCCATGCTGCGAGCCCTGCTGACCCTCGTAACCGAGTCAT ACCGCAACGATCCCCCCCTCTCTCTCACAAACGCAACGCGGGCATTGCAG CTCGCCCGGTTTTGTGTGCGTCCCATAACATAGCCATCTCATTTTTTTTA CTTTGCATGGCCAATGGCGAGTCTGAAAAAACAGAAGAATACCCGGGTTC CTTCGTGATTTTTCTTGAAAAACGACAAGTATGCACTGCTGTATCATTAC ACACCTCTTTTTTCCACCGCAGGTATCTACCACAGGTGTAAGAGTCCGGA ACAGACTACAACTGGAGACTCATTTTTATCGTTATGTAAGTCTCTCTTAA GTGTTTACCCTCGAGACAAGACAGGGCCGGCAACATCGAACGACCTCCTC GTGCTGGGGCATCTGTCGAGACCGCACAGCAGTACATACGATATCAATGG GCAACTCCTGGCGGCTGCAGGAGCTGCGCTACGGCATCCAGGCACGCCTG ACAGATTCGTTAGCAGTGGGCTCCCTCCCCTTGTCCTTCTCCACTCAGAG CCTTGCGGCAGTATGTTCAGCGCGGAAGTGCGCCTTCTAATAACAACTGT CTACCTCCGTTTATGTTCCCGTGGGGCGGCCCTCATTTCAGCAGGTGGCG TTGGTGGTGACTCTCTGTGTCTTGCTGGGAGTTCTCATGTGGGTGGGAAG CGGCGGGCTGGACATTCAGCCTAGCTCTTCCTCAGACGAATCCCAGCATG GCGCGACTCCAAACGTCTCGGGCGGCGGTAAGCAGGGCGTTGTACCGGTA CCGTGAGAGGCGGAGAGATGGCACCCCCCTTAGACCGACTTTCAAAGCTA TTATCGATTTGCTCCACAACCAACGACCAAGTGGGTCCAGGAAAGAGCCG ATATATCGATATATCTACGGAAAGCCCTCGACGAGATGTTTCCAAACTCG CCTTTATTGGTGTTAGCACAAGCTTCTTGTTGTGGAGCATTCGAGTTTTG AAAAATTGTCTACGGGGGTGCCATCTGTGCGCCTCTCGCGGTATGTTCCT ACGTGGGTGGGGTCTGGGGTGGGGGGGACGGAGATATCCCGCCGCCTGCG ATGGCTCCGGGAGCCGACGTTTACGTCTCTGTGTCGTTCGGCGTGTGCTT GGTAGCCCACGATCGGTAGGTAGGTTGACTCGTCCTTTTCTTCGATCTGT GGAACAAGAACTGTCCAGAAAAAGCAGGGCAATAAGTGGCGTAACGCTGC AGTTACACAGGTTTGTCGGCGTCTGTTCGGCGTTGTGTTTCGGCCGTCTT GCGCCTAGACGCACACGGGGAGCGGCGCGCTCTCAAGCCCCACGTGTTCT CGCGGTAGCTCCGCCACCCCGCCTATGTCTGAATAGTGGGTCCGACCTCG ATCGAACCCCTCTCCGCTCTTGTATCGCGTGCCTAAATTTCCCCCCGTGT TTGCTGCCATCGTGCGACGGCAGAGGGGGGGCTGAAGCAGAATACGTCGG CCGACAGGCCGGCAGACGCTTTCGAGGGCGAGCTAGACGTCCTGCTGAAA AGGGCTGCCACCTCGAAGGGACTCACCGAATCCGAGACCGAGGAGGCGAG GGTTGCGGCAACGAATGCCGTGAGAGAGGCATTGCGGAAACCCGGGGATC TCCCCCCGCGTTCCCTCGATGGCATCTTGTCGGCATCCTGCGGCCTCCAG GTGGAAGGCTTGCCCCTTTACCACGACAGGGGGCAAACGTGCTGCAAGAC GATCCAGAAGCCACCGCCGCAGCAACAGGCTCCTTCCAATGAAACCGGGC CGCAAGGGAGGCGCGGGCTGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGG GGGGGGGGGGAGGTGAACCTCTGCCTGGGGTGCTGAGAACAACGCAGAGA GCGGAGGTGGTCGGGGGAAACGAGGTGTCGTGCTTGCCGAGCTTCATTAT CGCGGGGACACAGAAGAGCGGTACTACGGCGCTAACGGGTGAGAGCGAGA GATATTTGCCGAGGGATAGCTGGGGTAGGGCGACGACGAGGGAGAGAGAG AGACAGATAGACAGAGAGAGATTGTCGCTGCTGTAGAGTCGCTGTGAGAG TGTCGCGGCAACCAAGATAGCCGGCCTGGGCTTCGGTTGCCGAGGTAGAC TAGGCTCCGGCTCTTTCGCCGGCCGGTATGGCAAACGTCCCCGCTCTTCG TGTCGTTAGAGTCTGTACACGCTGTACGGAAGAAACAAGCACGAGACGTA CGTACCACCGCGGGCTGTTGGCATGATCGCCGTGTTAAGAAGGATAAATC TGCTGGACACCAACAGACTGTCGCCTTTGTGGCAGGTTCCTTTGGGTTTT TTGTTTGTTTGCCGGAAACACTCCTACTGCCGCTAGATACTGCTGTGCAG GCGACATGTTTTGCTCGGCCTGGTCGTTACGGGATCATGGCAACGTAAAG GCCGTGCACAACGATGCTGCGAAGAACACGTCCAGCAACACAAGACGGAA ATGATGACACTGCAGGAACAGTTCTACCGCCATCAAGAGCGAGGGCGACT CAGCAGCAGCAGCGCACTCAACGAAAACAGAAATCAAAGAGAGCGTTGCC AGCCACAACAACTTGAGCAAACAAAACACCATGAAAGTTACTGACAACAC AGCGACAACGATCACGAACGACAAGAGTAAGAGTTCGACATTACCAACCT TACAACAACATCAACAAGAACCATCAAAACTCGAACCGCAACAGGCATAC TGGAGAAACACCCTCAGGTGATGATGGCGGAAAGGAAGGAGCTCCATTTC TTCGACCACAAGACTCCGAGCCAAGCCACCGCGGCGGGGTATGCGTCCAG CTTTCCAAGGTAT
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1516:392..3954-

>mRNA_E-fasciculatus_F_contig1516.3654.1 ID=mRNA_E-fasciculatus_F_contig1516.3654.1|Name=mRNA_E-fasciculatus_F_contig1516.3654.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1338bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1516:392..3954- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGAAGCCGTGGCAAACCGGACGCACCGGGGGCTGATTTTGCTTCCCA
CATGCCCAGGACGAGCCCTGATGAGCATCCCGTCCGAGTTGTGCCGCTAG
AATCGAGACGATGGCGGAACAAAATGAGAAGCCGTGGCAAACCGGACGCA
CCGGGGGCTGATTTTGCTTCCCACATGCCCAGGACGAGCCCTGATGAGCA
TCCCGTCCGAGTTGTGCCGCTAGAATCGAGACGATGGCGGAACAAAGTGG
CGTTGGTGGTGACTCTCTGTGTCTTGCTGGGAGTTCTCATGTGGGTGGGA
AGCGGCGGGCTGGACATTCAGCCTAGCTCTTCCTCAGACGAATCCCAGCA
TGGCGCGACTCCAAACGTCTCGGGCGGCGGTGGCGTTGGTGGTGACTCTC
TGTGTCTTGCTGGGAGTTCTCATGTGGGTGGGAAGCGGCGGGCTGGACAT
TCAGCCTAGCTCTTCCTCAGACGAATCCCAGCATGGCGCGACTCCAAACG
TCTCGGGCGGCGAGGGGGGGCTGAAGCAGAATACGTCGGCCGACAGGCCG
GCAGACGCTTTCGAGGGCGAGCTAGACGTCCTGCTGAAAAGGGCTGCCAC
CTCGAAGGGACTCACCGAATCCGAGACCGAGGAGGCGAGGGTTGCGGCAA
CGAATGCCGTGAGAGAGGCATTGCGGAAACCCGGGGATCTCCCCCCGCGT
TCCCTCGATGGCATCTTGTCGGCATCCTGCGGCCTCCAGGTGGAAGGCTT
GCCCCTTTACCACGACAGGGGGCAAACGTGCTGCAAGACGATCCAGAAGC
CACCGCCGCAGCAACAGGCTCCTTCCAATGAAACCGGGCCGCAAGGGAGG
CGCGGGCTGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGA
GGTGAACCTCTGCCTGGGGTGCTGAAGGGGGGGCTGAAGCAGAATACGTC
GGCCGACAGGCCGGCAGACGCTTTCGAGGGCGAGCTAGACGTCCTGCTGA
AAAGGGCTGCCACCTCGAAGGGACTCACCGAATCCGAGACCGAGGAGGCG
AGGGTTGCGGCAACGAATGCCGTGAGAGAGGCATTGCGGAAACCCGGGGA
TCTCCCCCCGCGTTCCCTCGATGGCATCTTGTCGGCATCCTGCGGCCTCC
AGGTGGAAGGCTTGCCCCTTTACCACGACAGGGGGCAAACGTGCTGCAAG
ACGATCCAGAAGCCACCGCCGCAGCAACAGGCTCCTTCCAATGAAACCGG
GCCGCAAGGGAGGCGCGGGCTGGAGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGAGGTGAACCTCTGCCTGGGGTGCTGA
back to top