mRNA_E-fasciculatus_F_contig15138.3644.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig15138.3644.1 vs. uniprot
Match: D7FTM8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTM8_ECTSI) HSP 1 Score: 655 bits (1690), Expect = 1.150e-222 Identity = 381/467 (81.58%), Postives = 382/467 (81.80%), Query Frame = 1
Query: 1 DTDRTIDSTLKVFRESDVAAATSTGAGPLAAXXXXAKNAGFDVDGGRRVRSGXXXXXXXXXXXXXXXXXXXXXAVGALSAQDDEARTIVLERCGALARSYGAKRQAIAVDNLLASMVKAGVQMNARFLNNALMAYLSCGEPQKAVDTFHAVTGIIWPDLPAWPDATSGKRRARARXXXXXXXXXXXTAGAA-----------------------------FPEDFRLLRAGPSTADAEALEASSWEGTGGQRFLQMRAVAEQVEGGGGSVAPAAASRPVAAVGADTAAAGG----GPLRRPALGEYVGGCRPNGMLVATVVKAHGRRRRLDDACRVVLRMVDWGIKPDVAVFNSLAAAAVWNGRMDLALQVVLGGMMQAWGVEPNQLSYNTIMDAYAREGNVENVVKIYNFMQGEGIAADVVTTTIVVKAQVGSGDVDAGARTLIEMMKVSNLRDKLDAFPFNTIIK 1302
DTDRTIDSTLKVFRE DVAAATSTGAGPLAA AKNAGFDVDGGRRV G AVGALSAQDDEARTIVLERCGALARSYGAKRQAIAVDNLLASMVKAGVQMNARFLNNALMAYLSC EPQKAVDTFHAVTGIIWPDLP WPDATSGK RAR XXXXXXXXXXX FPEDFRLLRAGPSTADAEALEASSWEGTGGQRFLQMRAVAEQVEGGG SV PAA AVG DTAA GPL+RPALGEYVGGCRPNGMLVATVVKAHGRRRRLDDACRVVLRMVDWGIKPDVAVFNSLAAAAVWNGRMDLALQVVLGGMMQAWGV PNQLSYNTIMDAYAREGNVENVVKIYNFMQGEGIA DVVTTTIVVKAQVGSGDVDAGARTLIEMMKVSNLRDKLDAFPFNTIIK
Sbjct: 490 DTDRTIDSTLKVFRERDVAAATSTGAGPLAAAAAAAKNAGFDVDGGRRVSRGSAAVAVGTSAGAAGGGG----AVGALSAQDDEARTIVLERCGALARSYGAKRQAIAVDNLLASMVKAGVQMNARFLNNALMAYLSCEEPQKAVDTFHAVTGIIWPDLPPWPDATSGKGRARXXXXXXXXXXXXXXXXXXXXXXXXDGVTSDTXXXXXXXXXXXXXADQFPEDFRLLRAGPSTADAEALEASSWEGTGGQRFLQMRAVAEQVEGGG-SVTPAALR--AVAVGLDTAAXXXXXXXGPLKRPALGEYVGGCRPNGMLVATVVKAHGRRRRLDDACRVVLRMVDWGIKPDVAVFNSLAAAAVWNGRMDLALQVVLGGMMQAWGVSPNQLSYNTIMDAYAREGNVENVVKIYNFMQGEGIAPDVVTTTIVVKAQVGSGDVDAGARTLIEMMKVSNLRDKLDAFPFNTIIK 949
BLAST of mRNA_E-fasciculatus_F_contig15138.3644.1 vs. uniprot
Match: A0A2I0AI16_9ASPA (Pentatricopeptide repeat-containing protein n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AI16_9ASPA) HSP 1 Score: 63.2 bits (152), Expect = 5.390e-7 Identity = 36/138 (26.09%), Postives = 72/138 (52.17%), Query Frame = 1
Query: 832 RPNGMLVATVVKAHGRRRRLDDACRVVLRMVDWGIKPDVAVFNSLAAAAVWNGRMDLALQVVLGGMMQAWGVEPNQLSYNTIMDAYAREGNVENVVKIYNFMQGEGIAADVVTTTIVVKAQVGSGDVDAGARTLIEMM 1245
RPN ++KA + + +A VV +M +G++PDV +N++A A NG A ++ L + ++PN+ S I+ Y +E + + ++ N M+G G+ +V+ ++K + D+ AG ++++M
Sbjct: 204 RPNRKSYNILIKAWCDQHKQSEAWNVVYKMTSYGVQPDVVTYNTIAQAYAKNGETKKAEELFLELQSR---IQPNERSLAIIVGGYCKEAKMNDALRCVNHMKGLGVHPNVIVFNTLIKGFLDVEDI-AGVNEVLKLM 337
BLAST of mRNA_E-fasciculatus_F_contig15138.3644.1 vs. uniprot
Match: UPI00098D7DC1 (pentatricopeptide repeat-containing protein At1g53600, mitochondrial n=1 Tax=Cajanus cajan TaxID=3821 RepID=UPI00098D7DC1) HSP 1 Score: 59.7 bits (143), Expect = 7.240e-6 Identity = 40/152 (26.32%), Postives = 77/152 (50.66%), Query Frame = 1
Query: 826 GCRPNGMLVATVVKAHGRRRRLDDACRVVLRMVDWGIKPDVAVFNSLAAAAVWNGRMDLALQVVLGGMMQAWGVEPNQLSYNTIMDAYAREGNVENVVKIYNFMQGEGIAADVVTTTIVVKAQVGSGDVDAGARTLIEMMKVSNLRDKLDAF 1281
GCRPN + +++V+ A L++ ++ ++ ++ D+++ NSL + +G + A ++ L +EPN +SYN+I++ +A+ G E + IY MQ EG + VT V+ A +G V+ G M + ++D +
Sbjct: 423 GCRPNPLTISSVLAAAAALVALNEGLQIHTCILKMNLEYDLSIQNSLISFYSKSGNVIDAYRIFLDV------IEPNVISYNSIINGFAQNGFGEEALSIYRKMQSEGHEPNHVTFLAVLSACTHAGLVEEGWNLFNTMKSRYGIEPEVDHY 568
BLAST of mRNA_E-fasciculatus_F_contig15138.3644.1 vs. uniprot
Match: UPI0010A40741 (pentatricopeptide repeat-containing protein At1g53600, mitochondrial-like n=2 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A40741) HSP 1 Score: 58.9 bits (141), Expect = 1.240e-5 Identity = 39/133 (29.32%), Postives = 68/133 (51.13%), Query Frame = 1
Query: 823 GGCRPNGMLVATVVKAHGRRRRLDDACRVVLRMVDWGIKPDVAVFNSLAAAAVWNGRMDLALQVVLGGMMQAWGVEPNQLSYNTIMDAYAREGNVENVVKIYNFMQGEGIAADVVTTTIVVKAQVGSGDVDAG 1221
GGCRPN + +++V+ A L+ ++ ++ ++ D++V NSL + G + A + + +EPN +S+N+I+ +A+ G E +KIY MQ EG + VT V+ A +G V G
Sbjct: 424 GGCRPNPLTLSSVLSASAALVMLNQGMQIHTNVLKMNLECDLSVQNSLVSMYSKCGYVSAAYTIFIDV------IEPNIVSFNSIITGFAQNGFGEEAIKIYKKMQCEGPEPNHVTFLAVLSACTHAGLVQEG 550
BLAST of mRNA_E-fasciculatus_F_contig15138.3644.1 vs. uniprot
Match: A0A0G4ETP1_VITBC (AMP deaminase n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ETP1_VITBC) HSP 1 Score: 58.5 bits (140), Expect = 1.760e-5 Identity = 44/173 (25.43%), Postives = 78/173 (45.09%), Query Frame = 1
Query: 856 TVVKAHGRRRRLDDACRVVLRMVDWGIKPDVAVFNSLAAAAVWNGRMDLALQVVLGGMMQAW---------------------------------------GVEPNQLSYNTIMDAYAREGNVENVVKIYNFMQGEGIAADVVTTTIVVKA--QVGSGDV-DAGARTLIEMMK 1248
T+++A+GRR A +V+ M+ G++ D V NS+ A V G++ +A + ++ +Q W G++PN +SYNT++DA R ++ + M G+GI AD T +I++K ++G G +A T +E +K
Sbjct: 187 TLIRAYGRRNDAWAALKVLREMLASGVQTDSLVLNSVLGACVGAGQLQIA-ETLVNESVQMWEEGQTLLADIVSFNILSKGYAQKRDFGGALKTLRASERAGLQPNDISYNTVIDAAVRSKRLDEAWDLVLEMGGKGIEADKYTCSILIKGLQKIGQGPAREAHLNTALEYLK 358
BLAST of mRNA_E-fasciculatus_F_contig15138.3644.1 vs. uniprot
Match: V4KLL1_EUTSA (Uncharacterized protein n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=V4KLL1_EUTSA) HSP 1 Score: 58.2 bits (139), Expect = 1.980e-5 Identity = 33/128 (25.78%), Postives = 67/128 (52.34%), Query Frame = 1
Query: 832 RPNGMLVATVVKAHGRRRRLDDACRVVLRMVDWGIKPDVAVFNSLAAAAVWNGRMDLALQVVLGGMMQAWGVEPNQLSYNTIMDAYAREGNVENVVKIYNFMQGEGIAADVVTTTIVVKAQVGSGDVD 1215
RPN +V+A +++++++A +VV +M + G++PD +N++A V G + A + V+ M+ +PN + ++ Y REG V + ++ M+ + A++V ++K V D D
Sbjct: 183 RPNIRTFNVLVQAWCKKKKVEEAWKVVRKMEECGVEPDTVTYNTIATCYVQKGETERAEREVVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLIKGFVEIMDRD 310
BLAST of mRNA_E-fasciculatus_F_contig15138.3644.1 vs. uniprot
Match: A9TMJ9_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9TMJ9_PHYPA) HSP 1 Score: 57.8 bits (138), Expect = 2.970e-5 Identity = 43/147 (29.25%), Postives = 70/147 (47.62%), Query Frame = 1
Query: 859 VVKAHGRRRRLDDACRVVLRMVDWGIKPDVAVFNSLAAAAVWNGRMDLALQVVLGGMMQAWGVEPNQLSYNTIMDAYAREGNVENVVKIYNFMQGEGIAADVVTTTIVVKAQVGSGDVDAGARTLIEMMKVSNLRDKLDAFPFNTII 1299
+++ R L +V+ M + G+ PDV + L + + A +V M+ G EPN+ YN+IM+ GN+ V + + MQG GIAADV + I++KA SG D ++ K + LD ++T+I
Sbjct: 283 IIREFSRHGNLRSCFKVLDFMKELGVMPDVFTYRVLIDSCGRHKEPSKAT-IVFEKMLND-GFEPNRFVYNSIMNVNV--GNLSEVRRYFQHMQGAGIAADVTSYNILLKAYAASGRADLAGDLYAQIKKAGKVT--LDVVFYSTLI 423
BLAST of mRNA_E-fasciculatus_F_contig15138.3644.1 vs. uniprot
Match: A0A2K1IM22_PHYPA (Smr domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IM22_PHYPA) HSP 1 Score: 57.8 bits (138), Expect = 3.220e-5 Identity = 43/147 (29.25%), Postives = 70/147 (47.62%), Query Frame = 1
Query: 859 VVKAHGRRRRLDDACRVVLRMVDWGIKPDVAVFNSLAAAAVWNGRMDLALQVVLGGMMQAWGVEPNQLSYNTIMDAYAREGNVENVVKIYNFMQGEGIAADVVTTTIVVKAQVGSGDVDAGARTLIEMMKVSNLRDKLDAFPFNTII 1299
+++ R L +V+ M + G+ PDV + L + + A +V M+ G EPN+ YN+IM+ GN+ V + + MQG GIAADV + I++KA SG D ++ K + LD ++T+I
Sbjct: 312 IIREFSRHGNLRSCFKVLDFMKELGVMPDVFTYRVLIDSCGRHKEPSKAT-IVFEKMLND-GFEPNRFVYNSIMNVNV--GNLSEVRRYFQHMQGAGIAADVTSYNILLKAYAASGRADLAGDLYAQIKKAGKVT--LDVVFYSTLI 452
BLAST of mRNA_E-fasciculatus_F_contig15138.3644.1 vs. uniprot
Match: A0A087GD63_ARAAL (Uncharacterized protein n=8 Tax=Brassicaceae TaxID=3700 RepID=A0A087GD63_ARAAL) HSP 1 Score: 57.0 bits (136), Expect = 4.640e-5 Identity = 33/128 (25.78%), Postives = 66/128 (51.56%), Query Frame = 1
Query: 832 RPNGMLVATVVKAHGRRRRLDDACRVVLRMVDWGIKPDVAVFNSLAAAAVWNGRMDLALQVVLGGMMQAWGVEPNQLSYNTIMDAYAREGNVENVVKIYNFMQGEGIAADVVTTTIVVKAQVGSGDVD 1215
RPN +V+A +++++++A +VV +M + G++PD +N++A V G A Q ++ M+ +PN + ++ Y REG V + ++ M+ + A++V ++K V D D
Sbjct: 190 RPNIRTFNVLVQAWCKKKKVEEAWKVVHKMEECGVRPDTVTYNTIATCYVQKGETKRAEQELVEKMVMKNKAKPNGRTCGIVVGGYCREGKVRDGLRFVRKMKEMRVEANLVVFNSLIKGFVEVMDRD 317 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15138.3644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig15138.3644.1 >prot_E-fasciculatus_F_contig15138.3644.1 ID=prot_E-fasciculatus_F_contig15138.3644.1|Name=mRNA_E-fasciculatus_F_contig15138.3644.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=434bp DTDRTIDSTLKVFRESDVAAATSTGAGPLAAAAAAAKNAGFDVDGGRRVRback to top mRNA from alignment at E-fasciculatus_F_contig15138:2..2829+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig15138.3644.1 ID=mRNA_E-fasciculatus_F_contig15138.3644.1|Name=mRNA_E-fasciculatus_F_contig15138.3644.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2828bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15138:2..2829+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15138:2..2829+ >mRNA_E-fasciculatus_F_contig15138.3644.1 ID=mRNA_E-fasciculatus_F_contig15138.3644.1|Name=mRNA_E-fasciculatus_F_contig15138.3644.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2604bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15138:2..2829+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |