prot_E-fasciculatus_F_contig15138.3644.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig15138.3644.1
Unique Nameprot_E-fasciculatus_F_contig15138.3644.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length434
Homology
BLAST of mRNA_E-fasciculatus_F_contig15138.3644.1 vs. uniprot
Match: D7FTM8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTM8_ECTSI)

HSP 1 Score: 655 bits (1690), Expect = 1.150e-222
Identity = 381/467 (81.58%), Postives = 382/467 (81.80%), Query Frame = 0
Query:    1 DTDRTIDSTLKVFRESDVAAATSTGAGPLAAXXXXAKNAGFDVDGGRRVRSGXXXXXXXXXXXXXXXXXXXXXAVGALSAQDDEARTIVLERCGALARSYGAKRQAIAVDNLLASMVKAGVQMNARFLNNALMAYLSCGEPQKAVDTFHAVTGIIWPDLPAWPDATSGKRRARARXXXXXXXXXXXTAGAA-----------------------------FPEDFRLLRAGPSTADAEALEASSWEGTGGQRFLQMRAVAEQVEGGGGSVAPAAASRPVAAVGADTAAAGG----GPLRRPALGEYVGGCRPNGMLVATVVKAHGRRRRLDDACRVVLRMVDWGIKPDVAVFNSLAAAAVWNGRMDLALQVVLGGMMQAWGVEPNQLSYNTIMDAYAREGNVENVVKIYNFMQGEGIAADVVTTTIVVKAQVGSGDVDAGARTLIEMMKVSNLRDKLDAFPFNTIIK 434
            DTDRTIDSTLKVFRE DVAAATSTGAGPLAA    AKNAGFDVDGGRRV  G                     AVGALSAQDDEARTIVLERCGALARSYGAKRQAIAVDNLLASMVKAGVQMNARFLNNALMAYLSC EPQKAVDTFHAVTGIIWPDLP WPDATSGK RAR  XXXXXXXXXXX                                  FPEDFRLLRAGPSTADAEALEASSWEGTGGQRFLQMRAVAEQVEGGG SV PAA      AVG DTAA       GPL+RPALGEYVGGCRPNGMLVATVVKAHGRRRRLDDACRVVLRMVDWGIKPDVAVFNSLAAAAVWNGRMDLALQVVLGGMMQAWGV PNQLSYNTIMDAYAREGNVENVVKIYNFMQGEGIA DVVTTTIVVKAQVGSGDVDAGARTLIEMMKVSNLRDKLDAFPFNTIIK
Sbjct:  490 DTDRTIDSTLKVFRERDVAAATSTGAGPLAAAAAAAKNAGFDVDGGRRVSRGSAAVAVGTSAGAAGGGG----AVGALSAQDDEARTIVLERCGALARSYGAKRQAIAVDNLLASMVKAGVQMNARFLNNALMAYLSCEEPQKAVDTFHAVTGIIWPDLPPWPDATSGKGRARXXXXXXXXXXXXXXXXXXXXXXXXDGVTSDTXXXXXXXXXXXXXADQFPEDFRLLRAGPSTADAEALEASSWEGTGGQRFLQMRAVAEQVEGGG-SVTPAALR--AVAVGLDTAAXXXXXXXGPLKRPALGEYVGGCRPNGMLVATVVKAHGRRRRLDDACRVVLRMVDWGIKPDVAVFNSLAAAAVWNGRMDLALQVVLGGMMQAWGVSPNQLSYNTIMDAYAREGNVENVVKIYNFMQGEGIAPDVVTTTIVVKAQVGSGDVDAGARTLIEMMKVSNLRDKLDAFPFNTIIK 949          
BLAST of mRNA_E-fasciculatus_F_contig15138.3644.1 vs. uniprot
Match: V4KLL1_EUTSA (Uncharacterized protein n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=V4KLL1_EUTSA)

HSP 1 Score: 58.2 bits (139), Expect = 1.980e-5
Identity = 33/128 (25.78%), Postives = 67/128 (52.34%), Query Frame = 0
Query:  278 RPNGMLVATVVKAHGRRRRLDDACRVVLRMVDWGIKPDVAVFNSLAAAAVWNGRMDLALQVVLGGMMQAWGVEPNQLSYNTIMDAYAREGNVENVVKIYNFMQGEGIAADVVTTTIVVKAQVGSGDVD 405
            RPN      +V+A  +++++++A +VV +M + G++PD   +N++A   V  G  + A + V+  M+     +PN  +   ++  Y REG V + ++    M+   + A++V    ++K  V   D D
Sbjct:  183 RPNIRTFNVLVQAWCKKKKVEEAWKVVRKMEECGVEPDTVTYNTIATCYVQKGETERAEREVVEKMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLIKGFVEIMDRD 310          
BLAST of mRNA_E-fasciculatus_F_contig15138.3644.1 vs. uniprot
Match: A0A087GD63_ARAAL (Uncharacterized protein n=8 Tax=Brassicaceae TaxID=3700 RepID=A0A087GD63_ARAAL)

HSP 1 Score: 57.0 bits (136), Expect = 4.640e-5
Identity = 33/128 (25.78%), Postives = 66/128 (51.56%), Query Frame = 0
Query:  278 RPNGMLVATVVKAHGRRRRLDDACRVVLRMVDWGIKPDVAVFNSLAAAAVWNGRMDLALQVVLGGMMQAWGVEPNQLSYNTIMDAYAREGNVENVVKIYNFMQGEGIAADVVTTTIVVKAQVGSGDVD 405
            RPN      +V+A  +++++++A +VV +M + G++PD   +N++A   V  G    A Q ++  M+     +PN  +   ++  Y REG V + ++    M+   + A++V    ++K  V   D D
Sbjct:  190 RPNIRTFNVLVQAWCKKKKVEEAWKVVHKMEECGVRPDTVTYNTIATCYVQKGETKRAEQELVEKMVMKNKAKPNGRTCGIVVGGYCREGKVRDGLRFVRKMKEMRVEANLVVFNSLIKGFVEVMDRD 317          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15138.3644.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FTM8_ECTSI1.150e-22281.58Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
V4KLL1_EUTSA1.980e-525.78Uncharacterized protein n=1 Tax=Eutrema salsugineu... [more]
A0A087GD63_ARAAL4.640e-525.78Uncharacterized protein n=8 Tax=Brassicaceae TaxID... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 273..426
e-value: 2.3E-29
score: 104.7
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 351..397
e-value: 3.8E-10
score: 39.8
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 355..387
e-value: 5.1E-7
score: 27.5
coord: 286..316
e-value: 1.7E-5
score: 22.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 352..386
score: 10.852
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 280..314
score: 8.955
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 315..351
score: 8.462
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 387..422
score: 6.807
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 276..417

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15138contigE-fasciculatus_F_contig15138:2..2829 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15138.3644.1mRNA_E-fasciculatus_F_contig15138.3644.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig15138 2..2829 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig15138.3644.1 ID=prot_E-fasciculatus_F_contig15138.3644.1|Name=mRNA_E-fasciculatus_F_contig15138.3644.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=434bp
DTDRTIDSTLKVFRESDVAAATSTGAGPLAAAAAAAKNAGFDVDGGRRVR
SGGSAAVAVGTSAGAAAAGGGGGAVGALSAQDDEARTIVLERCGALARSY
GAKRQAIAVDNLLASMVKAGVQMNARFLNNALMAYLSCGEPQKAVDTFHA
VTGIIWPDLPAWPDATSGKRRARARQQKKAAAAAAATAGAAFPEDFRLLR
AGPSTADAEALEASSWEGTGGQRFLQMRAVAEQVEGGGGSVAPAAASRPV
AAVGADTAAAGGGPLRRPALGEYVGGCRPNGMLVATVVKAHGRRRRLDDA
CRVVLRMVDWGIKPDVAVFNSLAAAAVWNGRMDLALQVVLGGMMQAWGVE
PNQLSYNTIMDAYAREGNVENVVKIYNFMQGEGIAADVVTTTIVVKAQVG
SGDVDAGARTLIEMMKVSNLRDKLDAFPFNTIIK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf