mRNA_E-fasciculatus_F_contig15129.3637.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15129.3637.1
Unique NamemRNA_E-fasciculatus_F_contig15129.3637.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig15129.3637.1 vs. uniprot
Match: A0A6H5KV36_9PHAE (Aminotran_1_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV36_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 8.290e-55
Identity = 95/99 (95.96%), Postives = 96/99 (96.97%), Query Frame = 1
Query:   22 AQSQYGCGSCGPRGFYGTIDVHTKIEDEVAAFMGTEEAISYSDSATTISSTIPAFAKKGDLTVVDQGVEENVQTGINLSRSTVRTFKHNDMDDLERVLK 318
            A  +YGCGSCGPRGFYGTIDVHTKIEDEVAAFMGTEEAISYSDSATTISSTIPAFAKKGDLTVVDQGVEENVQTGINLSRSTVRTFKHNDM DLERVLK
Sbjct:  228 ALDKYGCGSCGPRGFYGTIDVHTKIEDEVAAFMGTEEAISYSDSATTISSTIPAFAKKGDLTVVDQGVEENVQTGINLSRSTVRTFKHNDMADLERVLK 326          
BLAST of mRNA_E-fasciculatus_F_contig15129.3637.1 vs. uniprot
Match: A0A835Z5A0_9STRA (Pyridoxal phosphate-dependent transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5A0_9STRA)

HSP 1 Score: 150 bits (378), Expect = 8.880e-41
Identity = 74/99 (74.75%), Postives = 82/99 (82.83%), Query Frame = 1
Query:   19 AAQSQYGCGSCGPRGFYGTIDVHTKIEDEVAAFMGTEEAISYSDSATTISSTIPAFAKKGDLTVVDQGVEENVQTGINLSRSTVRTFKHNDMDDLERVL 315
            AA  +YGCGSCGPRGFYGTID H K+ED+ AAFM TE AISYSDSA T+SS I AFAK+GDL + D GV E VQTG++LSRSTVR FKHNDMDDL RVL
Sbjct:  152 AAMEKYGCGSCGPRGFYGTIDAHLKLEDQAAAFMRTEAAISYSDSAATVSSCIAAFAKRGDLILADMGVHEAVQTGLDLSRSTVRFFKHNDMDDLLRVL 250          
BLAST of mRNA_E-fasciculatus_F_contig15129.3637.1 vs. uniprot
Match: A0A4D9CT10_9STRA (Aminotran_1_2 domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CT10_9STRA)

HSP 1 Score: 147 bits (371), Expect = 9.790e-40
Identity = 69/100 (69.00%), Postives = 86/100 (86.00%), Query Frame = 1
Query:   19 AAQSQYGCGSCGPRGFYGTIDVHTKIEDEVAAFMGTEEAISYSDSATTISSTIPAFAKKGDLTVVDQGVEENVQTGINLSRSTVRTFKHNDMDDLERVLK 318
            AA ++YGCGSCGPRGFYG+IDVH   E  +AAF+G EEAISYSD+A+++SST+PAFAKKGDL + D+GV E +QT INLSR+ VR F+HNDM+DLERVL+
Sbjct:  162 AALNKYGCGSCGPRGFYGSIDVHVMAEQAMAAFLGAEEAISYSDAASSVSSTLPAFAKKGDLLIADEGVYEPIQTAINLSRAQVRYFRHNDMEDLERVLR 261          
BLAST of mRNA_E-fasciculatus_F_contig15129.3637.1 vs. uniprot
Match: A0A7S0PWX5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PWX5_9STRA)

HSP 1 Score: 137 bits (346), Expect = 5.530e-39
Identity = 64/99 (64.65%), Postives = 82/99 (82.83%), Query Frame = 1
Query:   19 AAQSQYGCGSCGPRGFYGTIDVHTKIEDEVAAFMGTEEAISYSDSATTISSTIPAFAKKGDLTVVDQGVEENVQTGINLSRSTVRTFKHNDMDDLERVL 315
            AA S+YGCGSCGPRGFYGTIDVH ++E+ +A F G+++AI YSD A+ +SSTI AFAK+GDL VVD+GV E + TG+ LSR+ V+ F+HNDM+DL RVL
Sbjct:   19 AAMSKYGCGSCGPRGFYGTIDVHLQLEESIAKFTGSDQAILYSDGASAVSSTIAAFAKRGDLLVVDEGVYEPLVTGVTLSRANVKWFRHNDMEDLRRVL 117          
BLAST of mRNA_E-fasciculatus_F_contig15129.3637.1 vs. uniprot
Match: A0A1E7EQ19_9STRA (PLP-dependent transferase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EQ19_9STRA)

HSP 1 Score: 134 bits (338), Expect = 9.510e-36
Identity = 64/99 (64.65%), Postives = 81/99 (81.82%), Query Frame = 1
Query:   22 AQSQYGCGSCGPRGFYGTIDVHTKIEDEVAAFMGTEEAISYSDSATTISSTIPAFAKKGDLTVVDQGVEENVQTGINLSRSTVRTFKHNDMDDLERVLK 318
            A ++YGCGSCGPRGFYGTID H +IE+E++ F  T++AI YSD A+T SSTI AFAK+GD+ VVD+GV E + TG+ LSR+ V  F+HND+DDLERVLK
Sbjct:   37 ALNKYGCGSCGPRGFYGTIDAHLQIEEEISKFCHTDQAILYSDGASTCSSTIAAFAKRGDVLVVDEGVYEPLSTGVYLSRANVHWFRHNDVDDLERVLK 135          
BLAST of mRNA_E-fasciculatus_F_contig15129.3637.1 vs. uniprot
Match: A0A448Z2M4_9STRA (Aminotran_1_2 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z2M4_9STRA)

HSP 1 Score: 135 bits (340), Expect = 6.440e-35
Identity = 64/99 (64.65%), Postives = 81/99 (81.82%), Query Frame = 1
Query:   22 AQSQYGCGSCGPRGFYGTIDVHTKIEDEVAAFMGTEEAISYSDSATTISSTIPAFAKKGDLTVVDQGVEENVQTGINLSRSTVRTFKHNDMDDLERVLK 318
            A ++YGCGSCGPRGFYGTIDVH +IE+E++ F  T++AI YSD A+  SST+ AFAK+GDL VVD+GV E + TG+ LSR+ V  F+HNDM+DLERVLK
Sbjct:  268 ALNKYGCGSCGPRGFYGTIDVHLQIEEEISRFCXTDQAILYSDGASACSSTVAAFAKRGDLLVVDEGVYEPLSTGVYLSRANVHWFRHNDMEDLERVLK 366          
BLAST of mRNA_E-fasciculatus_F_contig15129.3637.1 vs. uniprot
Match: UPI0010AADFE3 (long chain base biosynthesis protein 1-like isoform X1 n=3 Tax=Malus domestica TaxID=3750 RepID=UPI0010AADFE3)

HSP 1 Score: 130 bits (327), Expect = 6.550e-35
Identity = 61/105 (58.10%), Postives = 80/105 (76.19%), Query Frame = 1
Query:    4 VSSCFAAQSQYGCGSCGPRGFYGTIDVHTKIEDEVAAFMGTEEAISYSDSATTISSTIPAFAKKGDLTVVDQGVEENVQTGINLSRSTVRTFKHNDMDDLERVLK 318
            + SC +A  +YG GSCGPRGFYGTIDVH   E  +A F+GT ++I YS   +T+ S IPAFAKKGD+ VVD+GV   +Q G++LSRST++ FKHNDM+DL ++LK
Sbjct:  129 LESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIANFLGTPDSILYSYGLSTMFSAIPAFAKKGDIIVVDEGVHWGIQNGLHLSRSTIKYFKHNDMEDLRKILK 233          
BLAST of mRNA_E-fasciculatus_F_contig15129.3637.1 vs. uniprot
Match: A0A1Z5JIT6_FISSO (Serine palmitoyltransferase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JIT6_FISSO)

HSP 1 Score: 134 bits (336), Expect = 1.460e-34
Identity = 60/98 (61.22%), Postives = 81/98 (82.65%), Query Frame = 1
Query:   22 AQSQYGCGSCGPRGFYGTIDVHTKIEDEVAAFMGTEEAISYSDSATTISSTIPAFAKKGDLTVVDQGVEENVQTGINLSRSTVRTFKHNDMDDLERVL 315
            A  +YGCGSCGPRGFYGT+DVH ++E  +A F+GT++AI YSD A+T+SST+ AFAK+GDL V D+G+ E + TG++LSR+ V+ FKHNDM DL++VL
Sbjct:  210 ALDKYGCGSCGPRGFYGTVDVHLELESAMAKFIGTDDAILYSDGASTVSSTVAAFAKRGDLIVADEGIYEPLMTGVSLSRANVKWFKHNDMADLQKVL 307          
BLAST of mRNA_E-fasciculatus_F_contig15129.3637.1 vs. uniprot
Match: A0A1V9YDK3_9STRA (Serine palmitoyltransferase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YDK3_9STRA)

HSP 1 Score: 132 bits (331), Expect = 4.570e-34
Identity = 61/99 (61.62%), Postives = 78/99 (78.79%), Query Frame = 1
Query:   22 AQSQYGCGSCGPRGFYGTIDVHTKIEDEVAAFMGTEEAISYSDSATTISSTIPAFAKKGDLTVVDQGVEENVQTGINLSRSTVRTFKHNDMDDLERVLK 318
            A ++YGCGSCGPRGFYGTID H  +E ++A F+GT ++I++SD   T SS +PAFAK+GDL VVD GV +++ TG+NL+R T   FKHNDM DLERVLK
Sbjct:  156 ALTKYGCGSCGPRGFYGTIDTHELLEKDIAKFIGTTDSITFSDIEATASSVLPAFAKRGDLIVVDDGVNDSILTGVNLARCTTLYFKHNDMGDLERVLK 254          
BLAST of mRNA_E-fasciculatus_F_contig15129.3637.1 vs. uniprot
Match: A0A067CM92_SAPPC (Aminotran_1_2 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CM92_SAPPC)

HSP 1 Score: 132 bits (331), Expect = 4.800e-34
Identity = 61/99 (61.62%), Postives = 79/99 (79.80%), Query Frame = 1
Query:   22 AQSQYGCGSCGPRGFYGTIDVHTKIEDEVAAFMGTEEAISYSDSATTISSTIPAFAKKGDLTVVDQGVEENVQTGINLSRSTVRTFKHNDMDDLERVLK 318
            A ++YGCGSCGPRGFYGTID H  +E ++A F+GT ++I++SD   T SS +PAFAK+GDL VVD GV ++++TG+NL+R T   FKHNDM DLERVLK
Sbjct:  162 ALTKYGCGSCGPRGFYGTIDTHEILEKDIAHFIGTTDSITFSDIEATASSVLPAFAKRGDLIVVDDGVNDSIRTGVNLARCTTLYFKHNDMADLERVLK 260          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15129.3637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KV36_9PHAE8.290e-5595.96Aminotran_1_2 domain-containing protein n=1 Tax=Ec... [more]
A0A835Z5A0_9STRA8.880e-4174.75Pyridoxal phosphate-dependent transferase n=1 Tax=... [more]
A0A4D9CT10_9STRA9.790e-4069.00Aminotran_1_2 domain-containing protein n=3 Tax=Mo... [more]
A0A7S0PWX5_9STRA5.530e-3964.65Hypothetical protein (Fragment) n=1 Tax=Asterionel... [more]
A0A1E7EQ19_9STRA9.510e-3664.65PLP-dependent transferase n=1 Tax=Fragilariopsis c... [more]
A0A448Z2M4_9STRA6.440e-3564.65Aminotran_1_2 domain-containing protein n=1 Tax=Ps... [more]
UPI0010AADFE36.550e-3558.10long chain base biosynthesis protein 1-like isofor... [more]
A0A1Z5JIT6_FISSO1.460e-3461.22Serine palmitoyltransferase n=2 Tax=Fistulifera so... [more]
A0A1V9YDK3_9STRA4.570e-3461.62Serine palmitoyltransferase n=1 Tax=Achlya hypogyn... [more]
A0A067CM92_SAPPC4.800e-3461.62Aminotran_1_2 domain-containing protein n=2 Tax=Sa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15129contigE-fasciculatus_F_contig15129:1774..2681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.3
Seed ortholog evalue8.1e-30
Seed eggNOG ortholog159749.K0T8K6
KEGG rclassRC00004,RC02725,RC02849
KEGG koko:K00654
KEGG ReactionR01281
KEGG Pathwayko00600,ko01100,ko04071,ko04138,map00600,map01100,map04071,map04138
KEGG ModuleM00094,M00099
GOsGO:0002178,GO:0003674,GO:0003824,GO:0004758,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006629,GO:0006643,GO:0006665,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0012505,GO:0016020,GO:0016408,GO:0016409,GO:0016454,GO:0016740,GO:0016746,GO:0016747,GO:0017059,GO:0030148,GO:0031211,GO:0031984,GO:0032991,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046467,GO:0071704,GO:0098796,GO:0098827,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1905961,GO:1990234
EggNOG free text desc.Aminotransferase class I and II
EggNOG OGs2XBFK@2836,COG0156@1,KOG1358@2759
EC2.3.1.50
COG Functional cat.O
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Hectar predicted targeting categoryother localisation
Exons3
Model size318
Cds size318
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15129.3637.1prot_E-fasciculatus_F_contig15129.3637.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15129 1774..2681 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927994.0766964-CDS-E-fasciculatus_F_contig15129:1773..18721622927994.0766964-CDS-E-fasciculatus_F_contig15129:1773..1872Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15129 1774..1872 -
1695995781.4024003-CDS-E-fasciculatus_F_contig15129:1773..18721695995781.4024003-CDS-E-fasciculatus_F_contig15129:1773..1872Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15129 1774..1872 -
1622927994.0927563-CDS-E-fasciculatus_F_contig15129:2118..22441622927994.0927563-CDS-E-fasciculatus_F_contig15129:2118..2244Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15129 2119..2244 -
1695995781.4133337-CDS-E-fasciculatus_F_contig15129:2118..22441695995781.4133337-CDS-E-fasciculatus_F_contig15129:2118..2244Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15129 2119..2244 -
1622927994.106556-CDS-E-fasciculatus_F_contig15129:2588..26811622927994.106556-CDS-E-fasciculatus_F_contig15129:2588..2681Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15129 2589..2681 -
1695995781.422282-CDS-E-fasciculatus_F_contig15129:2588..26811695995781.422282-CDS-E-fasciculatus_F_contig15129:2588..2681Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15129 2589..2681 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15129.3637.1

>prot_E-fasciculatus_F_contig15129.3637.1 ID=prot_E-fasciculatus_F_contig15129.3637.1|Name=mRNA_E-fasciculatus_F_contig15129.3637.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=106bp
FVSSCFAAQSQYGCGSCGPRGFYGTIDVHTKIEDEVAAFMGTEEAISYSD
SATTISSTIPAFAKKGDLTVVDQGVEENVQTGINLSRSTVRTFKHNDMDD
LERVLK
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mRNA from alignment at E-fasciculatus_F_contig15129:1774..2681-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15129.3637.1 ID=mRNA_E-fasciculatus_F_contig15129.3637.1|Name=mRNA_E-fasciculatus_F_contig15129.3637.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=908bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15129:1774..2681- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTTGTTTCGTCCTGTTTCGCGGCGCAATCGCAGTACGGGTGCGGCTCCTG CGGGCCCAGGGGATTCTACGGGACGATCGACGTGCACACGAAGGTAAGCC AGTCTTACAGCGGGATAAAAAACTATGTGCGTGCGTGTGTGTGTGAATTA GTATGGGCCTCGGTAGCCGGCTGCGCAGTGGAAAGACGCCAGTCTTTCAG CGGGATAAATAAAGCTACTGTGGGCGTGCGTGTGCGAATTAGTAACAACC TGGCTAGCCGGCTGGCCGAATGAAACGACCCCAGTTTGTGTCGGGATAAA GAACGCCCGCGCGCGCGCGTGTGTGTGTTTGAATTAGCATCGGCGTTGCT AGCCGGCTGACCGCTGAAAAAACGCCAATCTTCTAATGGGATAATAATAA ACTGCTGTGTGTGTGTGTCTGTGTGTGTAATAATTAGATCGAGGACGAGG TGGCGGCGTTCATGGGCACCGAGGAGGCCATCTCGTACTCCGACAGCGCC ACCACCATATCCAGCACCATCCCGGCCTTCGCCAAGAAGGGGGACCTCAC CGTGGTCGACCAGGTACTGTCAAGGAAGAAATAAATGGAAAGGGTGTTCA CGGTACGGAATACCATCCCGGCCTTCGCCAAGAAGGGGGACCTCACCGTG GTCGACCAGGCTGTCAAGGAAAAAATAAATGGAAAGTGTGTTCACGAGCG GTATCTACGGAATAGGGAACCGAATGGAAAAACTTGTGAATTTTGTTGCT TTGGTCCCTTCTCACACACGCCGTGCTTTTCTTGTTGTTGTTGTATACTT CCGACACAGGGGGTAGAAGAGAACGTGCAGACGGGCATCAACCTGTCGCG GAGCACGGTGCGGACGTTCAAGCACAACGACATGGACGATCTGGAACGGG TTCTCAAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15129:1774..2681-

>mRNA_E-fasciculatus_F_contig15129.3637.1 ID=mRNA_E-fasciculatus_F_contig15129.3637.1|Name=mRNA_E-fasciculatus_F_contig15129.3637.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=636bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15129:1774..2681- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTTGTTTCGTCCTGTTTCGCGGCGCAATCGCAGTACGGGTGCGGCTCCTG
CGGGCCCAGGGGATTCTACGGGACGATCGACGTGCACACGAAGTTTGTTT
CGTCCTGTTTCGCGGCGCAATCGCAGTACGGGTGCGGCTCCTGCGGGCCC
AGGGGATTCTACGGGACGATCGACGTGCACACGAAGATCGAGGACGAGGT
GGCGGCGTTCATGGGCACCGAGGAGGCCATCTCGTACTCCGACAGCGCCA
CCACCATATCCAGCACCATCCCGGCCTTCGCCAAGAAGGGGGACCTCACC
GTGGTCGACCAGATCGAGGACGAGGTGGCGGCGTTCATGGGCACCGAGGA
GGCCATCTCGTACTCCGACAGCGCCACCACCATATCCAGCACCATCCCGG
CCTTCGCCAAGAAGGGGGACCTCACCGTGGTCGACCAGGGGGTAGAAGAG
AACGTGCAGACGGGCATCAACCTGTCGCGGAGCACGGTGCGGACGTTCAA
GCACAACGACATGGACGATCTGGAACGGGTTCTCAAGGGGGTAGAAGAGA
ACGTGCAGACGGGCATCAACCTGTCGCGGAGCACGGTGCGGACGTTCAAG
CACAACGACATGGACGATCTGGAACGGGTTCTCAAG
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