mRNA_E-fasciculatus_F_contig15114.3628.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15114.3628.1
Unique NamemRNA_E-fasciculatus_F_contig15114.3628.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig15114.3628.1 vs. uniprot
Match: D8LFV7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFV7_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 1.130e-26
Identity = 64/69 (92.75%), Postives = 65/69 (94.20%), Query Frame = 1
Query:   16 DRRDYDMHRLAREDKLKGKKLXXXXXXKEAAREKAPGQDFRVDVADERFAALLEGDTRFGIDRTDSSFK 222
            DRRDYDMHRLARE+KLKGK  XXXXXX  AAREKAPGQDFRVDVADERFAALLEGDTRFGIDRTDSSFK
Sbjct:  766 DRRDYDMHRLAREEKLKGKXXXXXXXXXXAAREKAPGQDFRVDVADERFAALLEGDTRFGIDRTDSSFK 834          
BLAST of mRNA_E-fasciculatus_F_contig15114.3628.1 vs. uniprot
Match: A0A835YR83_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR83_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 8.010e-14
Identity = 38/61 (62.30%), Postives = 47/61 (77.05%), Query Frame = 1
Query:   10 EEDRRDYDMHRLAREDKLKGKKLXXXXXXKEAAREKAPGQDFRVDVADERFAALLEGDTRF 192
            EED R++DM  L RE+K+KGKKL      KE AR++APGQ F VDV D+RFAA+LEGD+RF
Sbjct:  618 EEDERNFDMRALMREEKVKGKKLRGKRKRKEEARDRAPGQGFNVDVKDDRFAAVLEGDSRF 678          
BLAST of mRNA_E-fasciculatus_F_contig15114.3628.1 vs. uniprot
Match: I2CPY8_NANGC (NUC153 domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPY8_NANGC)

HSP 1 Score: 65.5 bits (158), Expect = 1.980e-11
Identity = 44/73 (60.27%), Postives = 50/73 (68.49%), Query Frame = 1
Query:    7 EEEDRRDYDMHRLAREDKLKGKKLXXXXXXKEAAREKA-PGQDFRVDVADERFAALLEGDTRFGIDRTDSSFK 222
            EEE RRD+DM  L R +KLKGK  XXXXXX       A PGQDFRVD +D RFAAL EGD R+GI+ T   +K
Sbjct:   78 EEEGRRDFDMRALERTEKLKGKXXXXXXXXXXXXXXXAVPGQDFRVDTSDSRFAALFEGDARYGIETTSKEYK 150          
BLAST of mRNA_E-fasciculatus_F_contig15114.3628.1 vs. uniprot
Match: A0A4D9D496_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D496_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 4.080e-11
Identity = 44/73 (60.27%), Postives = 51/73 (69.86%), Query Frame = 1
Query:    7 EEEDRRDYDMHRLAREDKLKGKKLXXXXXXKEAAREKA-PGQDFRVDVADERFAALLEGDTRFGIDRTDSSFK 222
            EEE RRD+DM  L R ++LKGKK XXXXXX       A PGQDFRVD +D RFAAL EGD R+GI+ T   +K
Sbjct:  689 EEEGRRDFDMRALERTERLKGKKXXXXXXXXXXXXXXAVPGQDFRVDTSDSRFAALFEGDARYGIETTSKEYK 761          
BLAST of mRNA_E-fasciculatus_F_contig15114.3628.1 vs. uniprot
Match: A0A1Z5KDP7_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KDP7_FISSO)

HSP 1 Score: 62.4 bits (150), Expect = 1.260e-9
Identity = 38/69 (55.07%), Postives = 46/69 (66.67%), Query Frame = 1
Query:   22 RDYDMHRLAREDKLKGKKLXXXXXXKEAAREK-APGQDFRVDVADERFAALLEG-DTRFGIDRTDSSFK 222
            +DY+M  L R ++ KGKKL      KE  R K   G DF+VDV DERF A+L+G D RFGIDRTD +FK
Sbjct:  643 KDYNMKDLERLERNKGKKLTGSRKRKEELRAKNTVGTDFKVDVEDERFKAVLDGQDGRFGIDRTDPNFK 711          
BLAST of mRNA_E-fasciculatus_F_contig15114.3628.1 vs. uniprot
Match: A0A1E7F590_9STRA (NUC153 domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F590_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 8.240e-9
Identity = 37/74 (50.00%), Postives = 46/74 (62.16%), Query Frame = 1
Query:    7 EEEDRRDYDMHRLAREDKLKGKKLXXXXXXKEAA-REKAPGQDFRVDVADERFAALLEG-DTRFGIDRTDSSFK 222
            E+E+ RDYD+  + R +K KGKKL      KEA       G  F+VD  D RF A+L+G D RFGID+TD SFK
Sbjct:  636 EDEEARDYDIRGIQRMEKNKGKKLTGSRKRKEAKIAADVSGSSFKVDTKDNRFQAVLDGSDARFGIDKTDPSFK 709          
BLAST of mRNA_E-fasciculatus_F_contig15114.3628.1 vs. uniprot
Match: A0A7S1FMP2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FMP2_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.620e-8
Identity = 43/77 (55.84%), Postives = 54/77 (70.13%), Query Frame = 1
Query:   10 EEDRRDYDMHRLAREDK-----LKGKKLXXXXXXKEAAREKAPGQDFRVDVADERFAALLEG-DTRFGIDRTDSSFK 222
            EED RDYDM  L + ++     L+GK+LXXXXXX    R    G +F+VDVAD+RFAA+L+G D RFGI RTD +FK
Sbjct:   14 EEDARDYDMRGLRKAERDAAKALRGKRLXXXXXXXXEVR----GGEFQVDVADDRFAAVLDGEDARFGITRTDPAFK 86          
BLAST of mRNA_E-fasciculatus_F_contig15114.3628.1 vs. uniprot
Match: B7GAK3_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GAK3_PHATC)

HSP 1 Score: 56.6 bits (135), Expect = 1.370e-7
Identity = 35/69 (50.72%), Postives = 41/69 (59.42%), Query Frame = 1
Query:   22 RDYDMHRLAREDKLKGKKLXXXXXXKEAA-REKAPGQDFRVDVADERFAALLEG-DTRFGIDRTDSSFK 222
            RDYDM  L R +K K KK        E A      G +F VD +D+RF A+L+G D RFGIDRTD SFK
Sbjct:  566 RDYDMRGLQRLEKNKDKKFTGSRKRNEVALAANVTGTEFHVDTSDQRFKAVLDGTDDRFGIDRTDPSFK 634          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15114.3628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LFV7_ECTSI1.130e-2692.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YR83_9STRA8.010e-1462.30Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
I2CPY8_NANGC1.980e-1160.27NUC153 domain-containing protein (Fragment) n=1 Ta... [more]
A0A4D9D496_9STRA4.080e-1160.27Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A1Z5KDP7_FISSO1.260e-955.07Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A1E7F590_9STRA8.240e-950.00NUC153 domain-containing protein n=1 Tax=Fragilari... [more]
A0A7S1FMP2_9STRA1.620e-855.84Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
B7GAK3_PHATC1.370e-750.72Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15114contigE-fasciculatus_F_contig15114:179..400 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue3.3e-22
Seed eggNOG ortholog2880.D8LFV7
Preferred nameESF1
KEGG koko:K22197
KEGG Pathwayko05225,map05225
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0031974,GO:0031981,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363
EggNOG free text desc.rRNA processing
EggNOG OGsCOG5638@1,KOG2318@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927993.1905365-CDS-E-fasciculatus_F_contig15114:178..4001622927993.1905365-CDS-E-fasciculatus_F_contig15114:178..400Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15114 179..400 -
1695995780.940036-CDS-E-fasciculatus_F_contig15114:178..4001695995780.940036-CDS-E-fasciculatus_F_contig15114:178..400Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15114 179..400 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15114.3628.1prot_E-fasciculatus_F_contig15114.3628.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15114 179..400 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15114.3628.1

>prot_E-fasciculatus_F_contig15114.3628.1 ID=prot_E-fasciculatus_F_contig15114.3628.1|Name=mRNA_E-fasciculatus_F_contig15114.3628.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=74bp
QEEEEDRRDYDMHRLAREDKLKGKKLRGKRKRKEAAREKAPGQDFRVDVA
DERFAALLEGDTRFGIDRTDSSFK
back to top

mRNA from alignment at E-fasciculatus_F_contig15114:179..400-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15114.3628.1 ID=mRNA_E-fasciculatus_F_contig15114.3628.1|Name=mRNA_E-fasciculatus_F_contig15114.3628.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=222bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15114:179..400- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGAGGAGGAAGAGGACCGGCGGGACTACGACATGCACCGGCTGGCCCG CGAGGACAAGCTCAAGGGCAAGAAGCTCAGGGGCAAGCGGAAACGGAAGG AGGCCGCAAGAGAGAAGGCACCCGGCCAAGACTTCAGGGTGGACGTGGCG GACGAGCGTTTCGCGGCCCTGCTGGAGGGGGACACGCGGTTCGGAATCGA TCGGACCGACTCCAGCTTCAAG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15114:179..400-

>mRNA_E-fasciculatus_F_contig15114.3628.1 ID=mRNA_E-fasciculatus_F_contig15114.3628.1|Name=mRNA_E-fasciculatus_F_contig15114.3628.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=444bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15114:179..400- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGAGGAGGAAGAGGACCGGCGGGACTACGACATGCACCGGCTGGCCCG
CGAGGACAAGCTCAAGGGCAAGAAGCTCAGGGGCAAGCGGAAACGGAAGG
AGGCCGCAAGAGAGAAGGCACCCGGCCAAGACTTCAGGGTGGACGTGGCG
GACGAGCGTTTCGCGGCCCTGCTGGAGGGGGACACGCGGTTCGGAATCGA
TCGGACCGACTCCAGCTTCAAGCAGGAGGAGGAAGAGGACCGGCGGGACT
ACGACATGCACCGGCTGGCCCGCGAGGACAAGCTCAAGGGCAAGAAGCTC
AGGGGCAAGCGGAAACGGAAGGAGGCCGCAAGAGAGAAGGCACCCGGCCA
AGACTTCAGGGTGGACGTGGCGGACGAGCGTTTCGCGGCCCTGCTGGAGG
GGGACACGCGGTTCGGAATCGATCGGACCGACTCCAGCTTCAAG
back to top