mRNA_E-fasciculatus_F_contig15059.3585.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15059.3585.1
Unique NamemRNA_E-fasciculatus_F_contig15059.3585.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig15059.3585.1 vs. uniprot
Match: D7FT77_ECTSI (Aspartate--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT77_ECTSI)

HSP 1 Score: 208 bits (530), Expect = 3.030e-62
Identity = 107/112 (95.54%), Postives = 109/112 (97.32%), Query Frame = 1
Query:    1 GDLPLVQSSEMTGKTFCPVGDLTSAKAGEEIWLRARVHTSRW--KGVFLVLRQALYTVQATVFVGGNVGRPMVQYAEDMSKESVIDVRGTLVVTPSPVSGCTQKEVELKIEE 330
            GDLP+VQSSEMTGKTFCPVGDLTSAKAGEEIWLRARVHTSR   KGVFLVLRQALYTVQATVFVGGNVGRPMVQYAED+SKESVIDVRGTLVVTPSPVSGCTQKEVELKIEE
Sbjct:  135 GDLPMVQSSEMTGKTFCPVGDLTSAKAGEEIWLRARVHTSRSIKKGVFLVLRQALYTVQATVFVGGNVGRPMVQYAEDVSKESVIDVRGTLVVTPSPVSGCTQKEVELKIEE 246          
BLAST of mRNA_E-fasciculatus_F_contig15059.3585.1 vs. uniprot
Match: A0A7S3XT61_HETAK (Aspartate--tRNA ligase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XT61_HETAK)

HSP 1 Score: 122 bits (305), Expect = 3.920e-30
Identity = 59/112 (52.68%), Postives = 81/112 (72.32%), Query Frame = 1
Query:    1 GDLPLVQSSEMTGKTFCPVGDLTSAKAGEEIWLRARVHTSRW--KGVFLVLRQALYTVQATVFVGGNVGRPMVQYAEDMSKESVIDVRGTLVVTPSPVSGCTQKEVELKIEE 330
            GD PL+ SS +TG+ F  +  +  ++A +E+W+RARVHTSR   KG FL+LRQ LYTVQ T+F G  V + MV+YA  + +ES+ID+RG +VV PSP+   TQK+VEL+I E
Sbjct:  109 GDYPLINSSGLTGRVFLRIHQIDKSRADQEVWVRARVHTSRGVGKGCFLLLRQTLYTVQCTMFQGEGVSKGMVKYATALPRESIIDIRGKVVVAPSPIDSATQKDVELQILE 220          
BLAST of mRNA_E-fasciculatus_F_contig15059.3585.1 vs. uniprot
Match: A0A1I8BCL8_MELHA (Aspartyl-tRNA synthetase n=1 Tax=Meloidogyne hapla TaxID=6305 RepID=A0A1I8BCL8_MELHA)

HSP 1 Score: 103 bits (258), Expect = 2.230e-25
Identity = 50/112 (44.64%), Postives = 78/112 (69.64%), Query Frame = 1
Query:    1 GDLPLVQSSEMTGKT-FCPVGDLTSAKAGEEIWLRARVHTSRWKG--VFLVLRQALYTVQATVFVGGNVGRPMVQYAEDMSKESVIDVRGTLVVTPSPVSGCTQKEVELKIE 327
            G+ P++QS E      F  + ++ +   G+E+WLRAR+H SR KG   F+ LRQ +Y+VQ  +FVGG + +  V++A+++SKES++D+ G +  TPSPVS CTQ +VE+KI+
Sbjct:    9 GNYPIIQSKEKHEDIEFINIQNIGAELDGKEVWLRARIHDSRGKGKNCFICLRQRIYSVQGVLFVGGEITKEFVKFAQNISKESLVDIFGQISKTPSPVSSCTQSDVEIKIQ 120          
BLAST of mRNA_E-fasciculatus_F_contig15059.3585.1 vs. uniprot
Match: A0A6V7W8Z8_9BILA (Aspartate--tRNA ligase, cytoplasmic n=2 Tax=Meloidogyne enterolobii TaxID=390850 RepID=A0A6V7W8Z8_9BILA)

HSP 1 Score: 106 bits (265), Expect = 8.740e-25
Identity = 53/112 (47.32%), Postives = 78/112 (69.64%), Query Frame = 1
Query:    1 GDLPLVQSSEMTGKT-FCPVGDLTSAKAGEEIWLRARVHTSRWKG--VFLVLRQALYTVQATVFVGGNVGRPMVQYAEDMSKESVIDVRGTLVVTPSPVSGCTQKEVELKIE 327
            G+ P++QS E      F  + D+ +   G+EIWLRAR+H SR KG   F+ LRQ +Y+VQ  +FVGG + +  V++A+++SKES++DV G +  TPSPVS CTQ +VE+KI+
Sbjct:   13 GNYPIMQSKEKHEDIKFINIQDIGAELDGKEIWLRARIHDSRGKGKNCFICLRQRIYSVQGVLFVGGEITKEFVKFAQNISKESLVDVFGQITKTPSPVSSCTQSDVEIKIQ 124          
BLAST of mRNA_E-fasciculatus_F_contig15059.3585.1 vs. uniprot
Match: A0A812VS85_9DINO (Aspartate--tRNA ligase n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812VS85_9DINO)

HSP 1 Score: 105 bits (263), Expect = 2.230e-24
Identity = 50/110 (45.45%), Postives = 78/110 (70.91%), Query Frame = 1
Query:    1 GDLPLVQSSEMTGKTFCPVGDLTSAKAGEEIWLRARVHTSRWKG--VFLVLRQALYTVQATVFVGGNVGRPMVQYAEDMSKESVIDVRGTLVVTPSPVSGCTQKEVELKI 324
            GD P++QS E++G+T+  +G++T A  G+ I +RARVHT R KG  VFLVLRQ ++TVQA +F G +  + M++Y   +S+ESV+DV  T+   P P++ C+ K +EL++
Sbjct:   88 GDTPVIQSREISGRTWTRLGEVTDAHVGQTILVRARVHTLRAKGKAVFLVLRQGVHTVQAVLFQGKDTPKEMIKYVSGISRESVVDVSATVSAVPEPIAACSIKSLELQV 197          
BLAST of mRNA_E-fasciculatus_F_contig15059.3585.1 vs. uniprot
Match: A0A7S3BRT7_9VIRI (Aspartyl-tRNA synthetase (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BRT7_9VIRI)

HSP 1 Score: 99.8 bits (247), Expect = 5.780e-24
Identity = 54/111 (48.65%), Postives = 75/111 (67.57%), Query Frame = 1
Query:    1 GDLPLVQSSEMTGKTFCPVGDLTSAKAGEEIWLRARVHTSRWKG--VFLVLRQALYTVQATVFVGG-NVGRPMVQYAEDMSKESVIDVRGTLVVTPSPVSGCTQKEVELKI 324
            G LPL+ SS  TG+T+  V D+ S+ AG  I +RARVH  R KG   FLVLRQ   TVQ  +F  G ++ +PMV++A +++KESV+DV   +V   SPV+GC+Q +VEL +
Sbjct:   77 GKLPLMNSSVKTGRTWTNVCDVGSSMAGTRILVRARVHAVRGKGKSAFLVLRQRTATVQVVMFADGEHISKPMVKFASNLTKESVVDVSAEVVKPDSPVTGCSQSDVELNV 187          
BLAST of mRNA_E-fasciculatus_F_contig15059.3585.1 vs. uniprot
Match: F1KUN3_ASCSU (Aspartate--tRNA ligase, cytoplasmic n=4 Tax=Ascaridoidea TaxID=33256 RepID=F1KUN3_ASCSU)

HSP 1 Score: 103 bits (257), Expect = 1.410e-23
Identity = 53/110 (48.18%), Postives = 75/110 (68.18%), Query Frame = 1
Query:    1 GDLPLVQSSEMTGKTFCPVGDLTSAKAGEEIWLRARVHTSRWKG--VFLVLRQALYTVQATVFVGGNVGRPMVQYAEDMSKESVIDVRGTLVVTPSPVSGCTQKEVELKI 324
            G  PLVQS+E     F  V ++T+A  G+EIW+R R+HTSR KG   F+V+RQ ++TVQA +FVG  V + M++Y  ++SKES+IDVRG +      +  CTQK+VEL +
Sbjct:   65 GTYPLVQSAEKKHLEFVDVENVTAAVDGKEIWVRGRLHTSRSKGKTCFIVVRQRVHTVQAMLFVGEKVSKQMLKYVSNISKESIIDVRGVVRKVDEEIVSCTQKDVELHV 174          
BLAST of mRNA_E-fasciculatus_F_contig15059.3585.1 vs. uniprot
Match: A0A7M7MXI6_STRPU (Aspartate--tRNA ligase, cytoplasmic n=2 Tax=Echinacea TaxID=7674 RepID=A0A7M7MXI6_STRPU)

HSP 1 Score: 103 bits (256), Expect = 1.920e-23
Identity = 49/112 (43.75%), Postives = 73/112 (65.18%), Query Frame = 1
Query:    1 GDLPLVQSSEMTGKTFCPVGDLTSAKAGEEIWLRARVHTSRWKG--VFLVLRQALYTVQATVFVGGNVGRPMVQYAEDMSKESVIDVRGTLVVTPSPVSGCTQKEVELKIEE 330
            G+ PL+QS     +    V +LT+ K  +++W+RAR+HTSR KG   FLVLRQ  +  Q  + V   V +PMV++A +++KES++DV G +   P P+  CTQK+VEL IE+
Sbjct:   60 GNYPLIQSQNKIERKIYRVEELTADKIDQKVWIRARLHTSRSKGKQCFLVLRQQQFNCQGLLCVSDKVSKPMVKFAANITKESIVDVEGVIAAVPQPIESCTQKDVELHIEQ 171          
BLAST of mRNA_E-fasciculatus_F_contig15059.3585.1 vs. uniprot
Match: UPI0002657794 (aspartate--tRNA ligase, cytoplasmic n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI0002657794)

HSP 1 Score: 100 bits (249), Expect = 1.770e-22
Identity = 47/108 (43.52%), Postives = 71/108 (65.74%), Query Frame = 1
Query:    1 GDLPLVQSSEMTGKTFCPVGDLTSAKAGEEIWLRARVHTSRWKG--VFLVLRQALYTVQATVFVGGNVGRPMVQYAEDMSKESVIDVRGTLVVTPSPVSGCTQKEVEL 318
            G   ++QSSE   +T  P+   TS   G+E+W+R R+H SR KG   FL+LRQA  ++Q  + VG NV R M+++  ++ KES+IDV G ++ TPS +  C+Q++VEL
Sbjct:   62 GSYGMIQSSERLERTLTPISSCTSKLVGQEVWVRGRIHVSRSKGKQCFLILRQACCSIQCVLAVGENVSREMLKFVSNIPKESIIDVCGKVMATPSKIDSCSQQDVEL 169          
BLAST of mRNA_E-fasciculatus_F_contig15059.3585.1 vs. uniprot
Match: A0A6F9DB58_9ASCI (Aspartate--tRNA ligase, cytoplasmic n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DB58_9ASCI)

HSP 1 Score: 100 bits (249), Expect = 1.890e-22
Identity = 47/111 (42.34%), Postives = 73/111 (65.77%), Query Frame = 1
Query:    1 GDLPLVQSSEMTGKTFCPVGDLTSAKAGEEIWLRARVHTSRWKG--VFLVLRQALYTVQATVFVGGNVGRPMVQYAEDMSKESVIDVRGTLVVTPSPVSGCTQKEVELKIE 327
            GD+ ++QS+E   +   PVGD+TSA A ++IW+R R+HTSR  G   F+V+R   +TVQ  VFVG  + + MV++  +++KES+IDV G +      +  CTQ +VE+ I+
Sbjct:   91 GDMKMIQSTEKLDRVLVPVGDITSASAEKDIWIRGRLHTSRGTGKQCFIVVRHQQWTVQGLVFVGEAISKQMVKFCANITKESIIDVFGVVKTVEQKIESCTQSDVEIHIK 201          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15059.3585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT77_ECTSI3.030e-6295.54Aspartate--tRNA ligase n=2 Tax=Ectocarpus TaxID=28... [more]
A0A7S3XT61_HETAK3.920e-3052.68Aspartate--tRNA ligase n=1 Tax=Heterosigma akashiw... [more]
A0A1I8BCL8_MELHA2.230e-2544.64Aspartyl-tRNA synthetase n=1 Tax=Meloidogyne hapla... [more]
A0A6V7W8Z8_9BILA8.740e-2547.32Aspartate--tRNA ligase, cytoplasmic n=2 Tax=Meloid... [more]
A0A812VS85_9DINO2.230e-2445.45Aspartate--tRNA ligase n=1 Tax=Symbiodinium sp. KB... [more]
A0A7S3BRT7_9VIRI5.780e-2448.65Aspartyl-tRNA synthetase (Fragment) n=1 Tax=Prasin... [more]
F1KUN3_ASCSU1.410e-2348.18Aspartate--tRNA ligase, cytoplasmic n=4 Tax=Ascari... [more]
A0A7M7MXI6_STRPU1.920e-2343.75Aspartate--tRNA ligase, cytoplasmic n=2 Tax=Echina... [more]
UPI00026577941.770e-2243.52aspartate--tRNA ligase, cytoplasmic n=1 Tax=Galend... [more]
A0A6F9DB58_9ASCI1.890e-2242.34Aspartate--tRNA ligase, cytoplasmic n=1 Tax=Phallu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15059contigE-fasciculatus_F_contig15059:3..748 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score95.1
Seed ortholog evalue1.9e-17
Seed eggNOG ortholog7668.SPU_017781-tr
Preferred nameDARS
KEGG rclassRC00055,RC00523
KEGG koko:K22503
KEGG ReactionR05577
KEGG Pathwayko00970,map00970
KEGG ModuleM00359
GOsGO:0003674,GO:0003824,GO:0004046,GO:0004812,GO:0004815,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006422,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016787,GO:0016810,GO:0016811,GO:0016874,GO:0016875,GO:0017101,GO:0019538,GO:0019752,GO:0022607,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0040007,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045202,GO:0046483,GO:0065003,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.aspartyl-tRNA aminoacylation
EggNOG OGs38CRQ@33154,3BACR@33208,3CR95@33213,COG0017@1,KOG0556@2759
EC6.1.1.12
COG Functional cat.J
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01007,ko03016
Hectar predicted targeting categoryother localisation
Exons2
Model size330
Cds size300
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15059.3585.1prot_E-fasciculatus_F_contig15059.3585.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15059 3..718 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927985.1090825-CDS-E-fasciculatus_F_contig15059:2..2061622927985.1090825-CDS-E-fasciculatus_F_contig15059:2..206Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15059 3..206 -
1695995778.644213-CDS-E-fasciculatus_F_contig15059:2..2061695995778.644213-CDS-E-fasciculatus_F_contig15059:2..206Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15059 3..206 -
1622927985.122297-CDS-E-fasciculatus_F_contig15059:622..7181622927985.122297-CDS-E-fasciculatus_F_contig15059:622..718Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15059 623..718 -
1695995778.663204-CDS-E-fasciculatus_F_contig15059:622..7181695995778.663204-CDS-E-fasciculatus_F_contig15059:622..718Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15059 623..718 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927985.1347013-UTR-E-fasciculatus_F_contig15059:718..7481622927985.1347013-UTR-E-fasciculatus_F_contig15059:718..748Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15059 719..748 -
1695995778.6778448-UTR-E-fasciculatus_F_contig15059:718..7481695995778.6778448-UTR-E-fasciculatus_F_contig15059:718..748Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15059 719..748 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15059.3585.1

>prot_E-fasciculatus_F_contig15059.3585.1 ID=prot_E-fasciculatus_F_contig15059.3585.1|Name=mRNA_E-fasciculatus_F_contig15059.3585.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=100bp
MTGKTFCPVGDLTSAKAGEEIWLRARVHTSRWKGVFLVLRQALYTVQATV
FVGGNVGRPMVQYAEDMSKESVIDVRGTLVVTPSPVSGCTQKEVELKIEE
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mRNA from alignment at E-fasciculatus_F_contig15059:3..748-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15059.3585.1 ID=mRNA_E-fasciculatus_F_contig15059.3585.1|Name=mRNA_E-fasciculatus_F_contig15059.3585.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=746bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15059:3..748- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCGACCTGCCCCTGGTCCAATCGTCGGAGATGACGGGCAAGACGTTCTG TCCCGTGGGAGACCTCACCTCCGCCAAGGCGGGCGAGGAGATCTGGCTGA GGGCTAGGGTGCACACCTCCCGGTGGGTGCTATATGGAGCAAAGGGATTG ATATCGTCGTCGTCGTCGTCGTCGTCGTCGTTGCATGATCCATCAAAATC GTTCTTCGTTGCAGTTTCGCCACCGCAGTTGCAGAGGTAACGGGTAGTCG GGGGGTGACTTACAGTCGAGATGGTGGTTTGCCTTCCTTCCCAGTGGTGT TGTCCAGGCTGCGAAGCGCGGTGGTTTCTCTGCGACCCACTTCTGCTGCT GTTGCTGAACGCATGGAATGAGTCCGGTGGGACAGCTTTTTGCTCTCTCG CCGTCGTGGTTGGGCAGCTGGACGTTTTGTTTTTTGCCTGGACGGGTGTC TTGCCTCTCAACCTCTTGTCCCTCCTTCCCGTTCGCCACTACCACCACCA CCAACACCCCAAAACACCCGAAACTTACGCAGGTCGATCAAGAAGGGCGT CTTCCTGGTCCTCCGGCAGGCTCTGTACACCGTCCAGGCCACCGTCTTCG TGGGCGGGAACGTGGGCAGGCCCATGGTCCAGTACGCGGAGGACATGTCG AAGGAGTCCGTCATCGACGTGAGGGGCACGCTCGTTGTCACGCCTTCCCC GGTATCCGGGTGCACGCAGAAGGAGGTGGAGCTCAAGATCGAGGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15059:3..748-

>mRNA_E-fasciculatus_F_contig15059.3585.1 ID=mRNA_E-fasciculatus_F_contig15059.3585.1|Name=mRNA_E-fasciculatus_F_contig15059.3585.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=600bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15059:3..748- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACGGGCAAGACGTTCTGTCCCGTGGGAGACCTCACCTCCGCCAAGGC
GGGCGAGGAGATCTGGCTGAGGGCTAGGGTGCACACCTCCCGGTGGATGA
CGGGCAAGACGTTCTGTCCCGTGGGAGACCTCACCTCCGCCAAGGCGGGC
GAGGAGATCTGGCTGAGGGCTAGGGTGCACACCTCCCGGTGGAAGGGCGT
CTTCCTGGTCCTCCGGCAGGCTCTGTACACCGTCCAGGCCACCGTCTTCG
TGGGCGGGAACGTGGGCAGGCCCATGGTCCAGTACGCGGAGGACATGTCG
AAGGAGTCCGTCATCGACGTGAGGGGCACGCTCGTTGTCACGCCTTCCCC
GGTATCCGGGTGCACGCAGAAGGAGGTGGAGCTCAAGATCGAGGAGAAGG
GCGTCTTCCTGGTCCTCCGGCAGGCTCTGTACACCGTCCAGGCCACCGTC
TTCGTGGGCGGGAACGTGGGCAGGCCCATGGTCCAGTACGCGGAGGACAT
GTCGAAGGAGTCCGTCATCGACGTGAGGGGCACGCTCGTTGTCACGCCTT
CCCCGGTATCCGGGTGCACGCAGAAGGAGGTGGAGCTCAAGATCGAGGAG
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