mRNA_E-fasciculatus_F_contig15035.3569.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15035.3569.1
Unique NamemRNA_E-fasciculatus_F_contig15035.3569.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15035.3569.1 vs. uniprot
Match: A0A6H5JCM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM7_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.050e-23
Identity = 47/51 (92.16%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:    4 GIVSALALITGQLVRRRAVGVDPEQPSQVYDFYMDLWKIFYLSYLFLPLAR 156
            G+VSALALITGQL+RRRA GVDPEQP QVYDFYMDLWKIFYLSYLFLPLAR
Sbjct:  436 GLVSALALITGQLMRRRAAGVDPEQPKQVYDFYMDLWKIFYLSYLFLPLAR 486
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BLAST of mRNA_E-fasciculatus_F_contig15035.3569.1 vs. uniprot
Match: D7FTE1_ECTSI (Tocopherol phytyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTE1_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 1.800e-22
Identity = 44/52 (84.62%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:    1 RGIVSALALITGQLVRRRAVGVDPEQPSQVYDFYMDLWKIFYLSYLFLPLAR 156
            RG++SA+ALI GQLVRRRA GVDP+QP QVYDFYMDLWK+FYLSYLFLPLAR
Sbjct:  327 RGLMSAVALIAGQLVRRRAAGVDPKQPKQVYDFYMDLWKLFYLSYLFLPLAR 378
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BLAST of mRNA_E-fasciculatus_F_contig15035.3569.1 vs. uniprot
Match: A0A448ZLS0_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZLS0_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 3.790e-13
Identity = 33/52 (63.46%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 RGIVSALALITGQLVRRRAVGVDPEQPSQVYDFYMDLWKIFYLSYLFLPLAR 156
            R +V A AL+ G  VRR A  VDP  P +VY FYM LWK+FYLSYLFLP AR
Sbjct:  379 RALVGAAALLAGASVRREASPVDPHNPREVYGFYMHLWKLFYLSYLFLPFAR 430
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BLAST of mRNA_E-fasciculatus_F_contig15035.3569.1 vs. uniprot
Match: A0A7S0ULR7_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0ULR7_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.940e-12
Identity = 30/52 (57.69%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 RGIVSALALITGQLVRRRAVGVDPEQPSQVYDFYMDLWKIFYLSYLFLPLAR 156
            R +V   AL+ G  V++ A  VDPE P +VYD+YM LWK+FYLSY  LPLAR
Sbjct:  227 RAVVGISALLAGASVQKEAAPVDPENPKEVYDYYMHLWKLFYLSYFVLPLAR 278
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BLAST of mRNA_E-fasciculatus_F_contig15035.3569.1 vs. uniprot
Match: A0A1E7F9X4_9STRA (Homogentisate phytyltransferase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F9X4_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 7.940e-11
Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 RGIVSALALITGQLVRRRAVGVDPEQPSQVYDFYMDLWKIFYLSYLFLPLAR 156
            R IV   AL+ G  V++ A  VDP+ P++VY FYM LWK+FYLSY  LP+AR
Sbjct:  430 RIIVGISALVAGASVQKEAAPVDPDNPTEVYGFYMHLWKLFYLSYFVLPIAR 481
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BLAST of mRNA_E-fasciculatus_F_contig15035.3569.1 vs. uniprot
Match: A0A812LGI0_SYMPI (VTE4 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812LGI0_SYMPI)

HSP 1 Score: 58.9 bits (141), Expect = 8.690e-9
Identity = 26/51 (50.98%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 RGIVSALALITGQLVRRRAVGVDPEQPSQVYDFYMDLWKIFYLSYLFLPLA 153
            RG+++ ++L+  + ++R+   VD E+P QV+DFYM +WKIFYL YL LPLA
Sbjct:  622 RGVLAVISLLFCRSLQRKERLVDAEKPKQVFDFYMFVWKIFYLCYLLLPLA 672
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BLAST of mRNA_E-fasciculatus_F_contig15035.3569.1 vs. uniprot
Match: A0A7R9W9M6_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W9M6_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.600e-8
Identity = 28/52 (53.85%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:    1 RGIVSALALITGQLVRRRAVGVDPEQPSQVYDFYMDLWKIFYLSYLFLPLAR 156
            R  V   +   G  VR  A  VDPE   QVY++YM LWK+FYLSYL LP AR
Sbjct:  342 RAGVGLASFALGLSVREEAQPVDPEDSQQVYEYYMHLWKLFYLSYLVLPFAR 393
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BLAST of mRNA_E-fasciculatus_F_contig15035.3569.1 vs. uniprot
Match: A0A7S0KBA4_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0KBA4_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.040e-7
Identity = 27/52 (51.92%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:    1 RGIVSALALITGQLVRRRAVGVDPEQPSQVYDFYMDLWKIFYLSYLFLPLAR 156
            R IV   ++  G   R  +  V+PE  S+VYD+YM LWKIFYLSY  LP AR
Sbjct:  194 RMIVGLSSIYFGVKARENSRDVNPESSSEVYDYYMYLWKIFYLSYFSLPFAR 245
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BLAST of mRNA_E-fasciculatus_F_contig15035.3569.1 vs. uniprot
Match: A0A7S1E2L3_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E2L3_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.390e-7
Identity = 24/52 (46.15%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:    1 RGIVSALALITGQLVRRRAVGVDPEQPSQVYDFYMDLWKIFYLSYLFLPLAR 156
            R  + A +L+ G  V ++A  V+PE    VY++YM LWK+FY+SYL LP  R
Sbjct:   92 RMALGAFSLMAGISVEKKANNVNPEDSGGVYEYYMYLWKLFYVSYLALPFVR 143
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BLAST of mRNA_E-fasciculatus_F_contig15035.3569.1 vs. uniprot
Match: A0A7S0CPH4_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CPH4_9EUKA)

HSP 1 Score: 49.3 bits (116), Expect = 1.190e-5
Identity = 24/38 (63.16%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:   43 VRRRAVGVDPEQPSQVYDFYMDLWKIFYLSYLFLPLAR 156
            VRRR  GVD    S+ Y +YM LWK+FYLSY  LPLAR
Sbjct:  146 VRRR--GVDARNESEAYAYYMHLWKMFYLSYFALPLAR 181
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15035.3569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JCM7_9PHAE2.050e-2392.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTE1_ECTSI1.800e-2284.62Tocopherol phytyltransferase n=1 Tax=Ectocarpus si... [more]
A0A448ZLS0_9STRA3.790e-1363.46Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S0ULR7_9STRA1.940e-1257.69Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A1E7F9X4_9STRA7.940e-1155.77Homogentisate phytyltransferase n=1 Tax=Fragilario... [more]
A0A812LGI0_SYMPI8.690e-950.98VTE4 protein n=1 Tax=Symbiodinium pilosum TaxID=29... [more]
A0A7R9W9M6_9STRA1.600e-853.85Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S0KBA4_9STRA1.040e-751.92Hypothetical protein n=1 Tax=Leptocylindrus aporus... [more]
A0A7S1E2L3_9STRA2.390e-746.15Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S0CPH4_9EUKA1.190e-563.16Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15035contigE-fasciculatus_F_contig15035:104..262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue2.1e-18
Seed eggNOG ortholog2880.D7FTE1
Preferred nameHPT1
KEGG rclassRC01840,RC02895
KEGG koko:K09833
KEGG ReactionR07500,R10708
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00112
GOsGO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006636,GO:0006766,GO:0006775,GO:0006810,GO:0008150,GO:0008152,GO:0008610,GO:0008643,GO:0009058,GO:0009110,GO:0009266,GO:0009507,GO:0009536,GO:0009628,GO:0009915,GO:0009987,GO:0010176,GO:0010189,GO:0010232,GO:0010233,GO:0010354,GO:0015766,GO:0015770,GO:0015772,GO:0016043,GO:0016053,GO:0016740,GO:0016765,GO:0018130,GO:0019752,GO:0031347,GO:0032501,GO:0032787,GO:0033559,GO:0042360,GO:0042362,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045229,GO:0046394,GO:0046483,GO:0048583,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0065007,GO:0071554,GO:0071555,GO:0071702,GO:0071704,GO:0071840,GO:0072330,GO:0080134,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617
EggNOG free text desc.homogentisate phytyltransferase activity
EggNOG OGs2R0I3@2759,COG0382@1
EC2.5.1.115,2.5.1.116
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01006
Hectar predicted targeting categorysignal peptide
Exons1
Model size159
Cds size159
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927983.9392726-CDS-E-fasciculatus_F_contig15035:103..2621622927983.9392726-CDS-E-fasciculatus_F_contig15035:103..262Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15035 104..262 +
1695995778.0024893-CDS-E-fasciculatus_F_contig15035:103..2621695995778.0024893-CDS-E-fasciculatus_F_contig15035:103..262Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15035 104..262 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15035.3569.1prot_E-fasciculatus_F_contig15035.3569.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15035 104..262 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15035.3569.1

>prot_E-fasciculatus_F_contig15035.3569.1 ID=prot_E-fasciculatus_F_contig15035.3569.1|Name=mRNA_E-fasciculatus_F_contig15035.3569.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=53bp
RGIVSALALITGQLVRRRAVGVDPEQPSQVYDFYMDLWKIFYLSYLFLPL
AR*
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mRNA from alignment at E-fasciculatus_F_contig15035:104..262+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15035.3569.1 ID=mRNA_E-fasciculatus_F_contig15035.3569.1|Name=mRNA_E-fasciculatus_F_contig15035.3569.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=159bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15035:104..262+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGAGGGATCGTGTCAGCCTTGGCCCTGATTACCGGCCAGCTGGTGAGAAG
GCGGGCGGTCGGTGTCGACCCGGAGCAACCCAGCCAAGTCTACGACTTCT
ACATGGATCTCTGGAAGATATTTTACTTGAGTTACCTTTTCCTTCCCCTG
GCGCGGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15035:104..262+

>mRNA_E-fasciculatus_F_contig15035.3569.1 ID=mRNA_E-fasciculatus_F_contig15035.3569.1|Name=mRNA_E-fasciculatus_F_contig15035.3569.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=318bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15035:104..262+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGAGGGATCGTGTCAGCCTTGGCCCTGATTACCGGCCAGCTGGTGAGAAG
GCGGGCGGTCGGTGTCGACCCGGAGCAACCCAGCCAAGTCTACGACTTCT
ACATGGATCTCTGGAAGATATTTTACTTGAGTTACCTTTTCCTTCCCCTG
GCGCGGTGAAGAGGGATCGTGTCAGCCTTGGCCCTGATTACCGGCCAGCT
GGTGAGAAGGCGGGCGGTCGGTGTCGACCCGGAGCAACCCAGCCAAGTCT
ACGACTTCTACATGGATCTCTGGAAGATATTTTACTTGAGTTACCTTTTC
CTTCCCCTGGCGCGGTGA
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