mRNA_E-fasciculatus_F_contig1503.3565.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1503.3565.1
Unique NamemRNA_E-fasciculatus_F_contig1503.3565.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1503.3565.1 vs. uniprot
Match: D8LFT7_ECTSI (Plastid phosphoglycerate mutase protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFT7_ECTSI)

HSP 1 Score: 609 bits (1570), Expect = 3.190e-218
Identity = 309/323 (95.67%), Postives = 314/323 (97.21%), Query Frame = 3
Query:  147 MRRPGRPRPAPGGFLLALATARKSFTRAFCFGGGSSGGNVGKRLFRGTAAESSAAKASTGPRSLATATPPESPFPP-GDDGELVSFFLLRHGQTNFNAIGRIQGTLDSSILTEQGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLECVRQELRKSELSKDFETVEIVPDIREIELFEWQGQLKEDIIKNNPEQYASWVADPSNFNFSGRYPARDLWERAGNAWDQIRSLQSIQDQPRTLVVAHNAINQALLWTALGCDTTYFRKLSWPNCAVLELQWRRGEARAERYRWVVPEASGFVEAADAARLLKDGEDDNRYTL 1112
            MRRPGRPRPAPGGFL+ALATARKSFTRAFCFGGGSS  +VGKRLFR TAAESSA KA TGPR LATATPPESPFPP GDDGEL SFFLLRHGQTNFNAIGRIQGTLDSSILTE+GISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLECVRQELRKSE+SKDFETVEIVPDIREIELFEWQGQLKEDIIKNNPEQYASWVADPSNFNFSGRYPARDLW+RA NAWDQIRSLQSIQDQPRTLVVAHNAINQALLWTALGCDTTYFRKLSWPNCAVLELQWRRGEARAERYRWVVPEASGFVEAADAARLLKDGEDDNRYTL
Sbjct:    1 MRRPGRPRPAPGGFLIALATARKSFTRAFCFGGGSSS-SVGKRLFRSTAAESSA-KAGTGPRGLATATPPESPFPPAGDDGELESFFLLRHGQTNFNAIGRIQGTLDSSILTEEGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLECVRQELRKSEISKDFETVEIVPDIREIELFEWQGQLKEDIIKNNPEQYASWVADPSNFNFSGRYPARDLWKRASNAWDQIRSLQSIQDQPRTLVVAHNAINQALLWTALGCDTTYFRKLSWPNCAVLELQWRRGEARAERYRWVVPEASGFVEAADAARLLKDGEDDNRYTL 321          
BLAST of mRNA_E-fasciculatus_F_contig1503.3565.1 vs. uniprot
Match: Q00GN2_KARBR (Plastid phosphoglycerate mutase protein (Fragment) n=1 Tax=Karenia brevis TaxID=156230 RepID=Q00GN2_KARBR)

HSP 1 Score: 179 bits (453), Expect = 3.220e-49
Identity = 105/243 (43.21%), Postives = 144/243 (59.26%), Query Frame = 3
Query:  399 FFLLRHGQTNFNAIGRIQGTLDSSILTEQGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLECVRQELRKSELSKDFETVEIVPDIREIELFEWQGQLKEDIIKNNPEQYASWVADPSNFNFSGRYPARDLWERAGNAWDQIRSLQSIQDQPR-----TLVVAHNAINQALLWTALGCDTTYFRKLSWPNCAVLELQWRRGEARAERYRWVVP--EASGFVEAADAARLLKDGEDDNRY 1106
            + +LRHG+TNFNA G +QG+ D S LTE+G +QA +AG  LA+ +DL +   V VSP+ RA  TLE V Q L  S           +P++REI+L+ W+G+ KED+ +  P+ Y +W +   +F   G YP  +LW+RA  AW  IR+ +   D  R     TL+V HN I QAL ++A+G D +YFR+LS+PN   LE  W  GE  A R+RW +P  EAS    +A AA L      D RY
Sbjct:   99 YLILRHGETNFNAKGILQGSSDISRLTEKGQAQANKAGMELATLSDLPI-EQVFVSPLTRATSTLELVAQSLPCS-----LPEAITLPELREIDLYSWEGKQKEDLKREMPDTYQAWKSADPDFVVDGHYPLVELWQRAKEAWAAIRASE---DGKRDIDGVTLIVCHNGIGQALFFSAIGLDASYFRQLSFPNAGALECDWPLGELHASRWRWRLPLDEASSEWRSATAASL---DASDGRY 329          
BLAST of mRNA_E-fasciculatus_F_contig1503.3565.1 vs. uniprot
Match: A0A7S0F1H7_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0F1H7_9CRYP)

HSP 1 Score: 171 bits (434), Expect = 7.530e-46
Identity = 97/218 (44.50%), Postives = 140/218 (64.22%), Query Frame = 3
Query:  399 FFLLRHGQTNFNAIGRIQGTLDSSILTEQGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLECVRQELRKSELSKDFETVEIV-PDIREIELFEWQGQLKEDIIKNNPEQYASWVAD-PSNFNF-SGRYPARDLWERAGNAWDQIRSLQSIQDQPRTLVVAHNAINQALLWTALGCDTTYFRKLSWPNCAVLELQWRRGEARAERYRWVVPEAS 1043
            F +LRHG+TN+NA GRIQG+ D S LTE+G +QA   G  L S   +D   +V VSP+ RA++TLE     L ++ L ++     IV  D+RE++L+EW+G LK++I +  P+ Y+ W  + P  F   SG+YP RDLW+RA N WD +R  +   +   TL+VAHN INQALL T LG    +FRKL +PNC + E+    G+++A+++RW+ P  S
Sbjct:  158 FLILRHGKTNYNAEGRIQGSTDFSRLTEEGEAQASSVGGIL-SEIHID---SVFVSPLTRARRTLE-----LAEAGLGRNLSGSAIVLDDLREVDLYEWEGMLKKEIKEMYPDIYSLWRGENPRQFKLDSGKYPIRDLWKRASNVWDVLR--RDATNGKTTLIVAHNGINQALLCTTLGLSEEFFRKLEFPNCGIAEVIIPHGQSKAKQWRWLYPTPS 364          
BLAST of mRNA_E-fasciculatus_F_contig1503.3565.1 vs. uniprot
Match: A0A7S4C0X0_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C0X0_CHRCT)

HSP 1 Score: 162 bits (411), Expect = 1.310e-43
Identity = 101/261 (38.70%), Postives = 140/261 (53.64%), Query Frame = 3
Query:  324 GPRSLATATPPESPFPPGDDGELVSFFLLRHGQTNFNAIGRIQGTLDSSILTEQGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLECVRQELRKSELSKDFETVEIV-PDIREIELFEWQGQLKEDIIKNNPEQYASWVADPSNFNFSGRYPARDLWERAGNAWDQIRSLQSIQDQPRT---LVVAHNAINQALLWTALGCDTTYFRKLSWPNCAVLELQWRRG--------------EARAERYRWVVPEASGFV 1052
            G  S A   PP S  P    G    F +LRHG+TN NA G IQG+ D S+LT++G  QA  AG+ LA          V VSP+ RA+ TLE  R+       +    T EIV  D+RE++L++W+G+ K D+ +  P++Y +W   P  F+ SG+ P  DLW RA N W +I S   + + P +   LVV H+ I QALL TALG D   FR+ + PNC  +EL+W  G              +  A R+RW++P  S + 
Sbjct:   14 GRASSAALQPPTSAAP----GAGCKFVILRHGETNHNADGIIQGSSDVSVLTDKGKEQARRAGEQLAELYQEGSISKVFVSPLSRARDTLELCRK-------TAPLPTGEIVLADLREVDLWDWEGRNKADLRRERPDEYEAWKGQPLLFSVSGKKPIVDLWARARNVWREIHS--QVPEDPSSGTILVVCHSGIGQALLSTALGEDERSFRRRALPNCGAVELEWIDGYVASTDGGVASMDSDCLANRWRWLIPNTSEWT 261          
BLAST of mRNA_E-fasciculatus_F_contig1503.3565.1 vs. uniprot
Match: A0A7S4I552_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I552_9STRA)

HSP 1 Score: 162 bits (410), Expect = 1.610e-43
Identity = 93/249 (37.35%), Postives = 140/249 (56.22%), Query Frame = 3
Query:  372 PGDDGELVSFFLLRHGQTNFNAIGRIQGTLDSSILTEQGISQALEAGKTLASYAD----LDLGPT--VVVSPMGRAQQTLECVRQELRKSELSKDFETVEIVPDIREIELFEWQGQLKEDIIKNNPEQYASW-VADPSNFNFSGRYPARDLWERAGNAWDQIRSLQSI-------QDQPRTLVVAHNAINQALLWTALGCDTTYFRKLSWPNCAVLELQWRRGEARAERYRWVVPEASGFVEAADAARL 1076
            P     L  +F+LRHG+T+ NA GRIQG+ D S LTE+G SQA   G  +   +D    +D GP   V  SP+ RAQ+TL+ +R+    S +  + E V  + ++REI+L++W+G+   +I +N+PE YA+W + D      SG  P  ++W RAG  W+ IRS  ++       ++   TL+V H  + Q LL +ALG D T+FR+  +PNC + E+ W   E  A  +RW  P  S  ++  D   L
Sbjct:   33 PPSSASLHRYFILRHGETDANASGRIQGSADFSRLTERGQSQAARVGSVVFGGSDGEGSID-GPIRHVYASPLTRAQETLQIIREHADPSLIPGEGEIV--LDELREIDLYDWEGRHTSEIEENDPEAYAAWTMGDAHGMEVSGCKPIVEMWARAGRVWEIIRSANAVAGRTDSDENPSSTLLVCHGTLGQGLLSSALGLDETHFRRHDFPNCGMAEIVWYHDEEIARNWRWHHPSRSELMQPFDQTVL 278          
BLAST of mRNA_E-fasciculatus_F_contig1503.3565.1 vs. uniprot
Match: L1ISC6_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1ISC6_GUITC)

HSP 1 Score: 151 bits (381), Expect = 4.220e-40
Identity = 88/198 (44.44%), Postives = 125/198 (63.13%), Query Frame = 3
Query:  399 FFLLRHGQTNFNAIGRIQGTLDSSILTEQGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLECVRQELRKSELSKDFETVEIVPDIREIELFEWQGQLKEDIIKNN-PEQYASWVAD-PSNFNF-SGRYPARDLWERAGNAWDQIRSLQSIQDQPRTLVVAHNAINQALLWTALGCDTTYFRKLSWPNCAVLEL 983
            F  LRHG+TN+NA GRIQG+ D S LTE+G +QA   G+ L+   D+ +  +V VSP+ RA+ TLE       ++ LS   ++  ++ D+RE++L EW+G LK+  IK   P+ Y+ W  + P  F   SG+YP RDLW+RAG  W+ +R  +   +   +L+VAHN INQALL T LG    YFRKL +PNC + E+
Sbjct:   17 FLFLRHGKTNYNAEGRIQGSTDFSRLTEEGEAQASSVGRILS---DIPID-SVFVSPLTRARMTLELAAAGSGRN-LS---DSAMVLDDLREVDLHEWEGMLKKQEIKEMYPDIYSLWRGENPREFKLDSGKYPIRDLWKRAGKVWEVLR--RDAANGKTSLIVAHNGINQALLCTTLGLSEEYFRKLEFPNCGIAEV 204          
BLAST of mRNA_E-fasciculatus_F_contig1503.3565.1 vs. uniprot
Match: R1DPI0_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DPI0_EMIHU)

HSP 1 Score: 144 bits (362), Expect = 1.380e-36
Identity = 93/250 (37.20%), Postives = 133/250 (53.20%), Query Frame = 3
Query:  393 VSFFLLRHGQTNFNAIGRIQGTLDSSILTEQGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLECVRQELRKSELSKDFETVEIVPDIREIELFEWQGQLKEDIIKNNPEQYASWVADPSNFNFSGRYPAR-----DLWERAGNA-WDQIRSLQSI---QDQPRTLVVAHNAINQALLWTALGCDTTYFRKLS------------WPNCAVLELQWRRGEARAERYRWVVPEASGFVEAADAARLL 1079
            V F +LRHGQT+ N  G IQG+ D S L+++G +QA E G  LA   D+ +  T + SP+ RAQQT E +  +        D  T   +  +REI+L  W+G+ K ++    P+ YA+W  DP      GR P       +LWERA +A W  +R++ +     D+  TLVV H ++ QALL TALG D T +R+              +PNC + E+ W     RA R+RW +PE  G  ++  AAR L
Sbjct:   20 VRFLVLRHGQTDHNRDGIIQGSSDVSRLSDRGRTQAREVGAALARLGDVRVARTFL-SPLARAQQTHEILLLD------RPDLPTPTTLDGLREIDLGSWEGRAKAELRAEQPDVYAAWQCDPLAMVVDGRRPRCRKPIVELWERARSAAWPTLRAVDTAAAEDDEGATLVVCHGSLGQALLCTALGLDATAWRRHRLARCTAERARHPFPNCGMAEIDWPADAPRATRWRWRLPE-EGCWQSGTAARAL 261          
BLAST of mRNA_E-fasciculatus_F_contig1503.3565.1 vs. uniprot
Match: A0A812MB86_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812MB86_9DINO)

HSP 1 Score: 140 bits (354), Expect = 1.160e-35
Identity = 92/229 (40.17%), Postives = 131/229 (57.21%), Query Frame = 3
Query:  399 FFLLRHGQTNFNAIGRIQGTLDS-SILTEQGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLECVRQELRKSELSKDFETVEIVPDIREIELFEWQGQLKEDIIKNNPEQYASWVADPSNFNFSGRYPARDLWERAGNAWDQIRSLQSIQDQPRTLVVAHNAINQALLWTALGCDTTYFRKLSWPNCAVLELQWRRGEARAERYRWVVPEASGFVEAADAARLLK 1082
            F L+RHGQT FNA  R QG++D  S+LT +GISQA E G+ L           V VSP+ RA+QTLE  R      E+    ET   + ++REI+L+EWQG+ +++I   +PE    W  +  N   SGRY  RDLW R+  AW ++R +    ++ R+LVVAH AI +AL+ TALG     FR L+  N  V+E+ W   EA+   +R + P+   +   AD  + +K
Sbjct:   22 FLLVRHGQTTFNAEKRFQGSMDEGSVLTAKGISQAEELGQWLKGNPVA----AVFVSPLLRARQTLEVARTVA--GEVLPPTETK--LSELREIDLYEWQGRTQDEIRAEDPELMRLWKEETWNLQVSGRYVVRDLWRRSIEAWHRMRQVAPSGEE-RSLVVAHGAIIKALISTALGLPEQGFRHLAMSNGEVVEVAWSGSEAK---WRKLHPDKGPWRCLADEEQAMK 238          
BLAST of mRNA_E-fasciculatus_F_contig1503.3565.1 vs. uniprot
Match: A0A2J6K5X6_LACSA (Uncharacterized protein n=2 Tax=Lactuca TaxID=4235 RepID=A0A2J6K5X6_LACSA)

HSP 1 Score: 142 bits (357), Expect = 7.630e-34
Identity = 87/203 (42.86%), Postives = 117/203 (57.64%), Query Frame = 3
Query:  366 FPPGDDGELVSFFLLRHGQTNFNAIGRIQGTLDSSILTEQGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLECVRQELRKSELSKDFETVEIVPDIREIELFEWQGQLKEDIIKNNPEQYASWVADPSNFNFSGRYPARDLWERAGNAWDQIRSLQSIQDQPRTLVVAHNAINQALLWTALGCDTTYFRKLSWPNCAV 974
            FPP    + V   L+RHGQ+ +NA GRIQG+ D SILT++G +QA E  + +      D+      SP+ R+++T E +    R+ E+  D        D+REI+L+ +QG LK + I    E +A W  D  NFN  G YP R+LWERA N W++I     I D    LVVAHNA+NQAL+ TA+G  T YFR L   NC V
Sbjct:   73 FPPVKVAKRV--VLVRHGQSTWNAEGRIQGSSDFSILTQKGEAQA-ETSRQMLIDDSFDI---CFSSPLRRSKRTAEVIWGS-RQEEILTD-------SDLREIDLYSFQGLLKHEGISKYGEAFAQWQKDAPNFNIDGHYPVRELWERASNCWNKIL----IHDSRSVLVVAHNAVNQALVATAMGLGTEYFRILLQSNCGV 257          
BLAST of mRNA_E-fasciculatus_F_contig1503.3565.1 vs. uniprot
Match: UPI0007EF521C (LOW QUALITY PROTEIN: probable 2-carboxy-D-arabinitol-1-phosphatase n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EF521C)

HSP 1 Score: 141 bits (355), Expect = 9.790e-34
Identity = 85/204 (41.67%), Postives = 116/204 (56.86%), Query Frame = 3
Query:  363 PFPPGDDGELVSFFLLRHGQTNFNAIGRIQGTLDSSILTEQGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLECVRQELRKSELSKDFETVEIVPDIREIELFEWQGQLKEDIIKNNPEQYASWVADPSNFNFSGRYPARDLWERAGNAWDQIRSLQSIQDQPRTLVVAHNAINQALLWTALGCDTTYFRKLSWPNCAV 974
            PFP     + V   L+RHGQ+ +NA GRIQG+ + S+LT++G +QA E  + +      D+      SP+ R+++T E +    RK E+  D        D+REI+L+ +QG LK +  +   E Y  W  DP+NF   G YP R LWERA N WD+I     + D    LVVAHNA+NQAL+ TA+G  T YFR L   NC V
Sbjct:   41 PFPAVKSAKRV--VLVRHGQSTWNAEGRIQGSSNFSVLTQKGEAQA-ETSRQMLVDDSFDI---CFASPLNRSKRTAEIIWG-TRKEEILTDL-------DLREIDLYSFQGLLKHEGKEKFGEAYQEWQKDPANFCIDGNYPVRQLWERARNCWDKIL----LHDSRSVLVVAHNAVNQALIATAMGLGTEYFRVLLQSNCGV 226          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1503.3565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFT7_ECTSI3.190e-21895.67Plastid phosphoglycerate mutase protein n=2 Tax=Ec... [more]
Q00GN2_KARBR3.220e-4943.21Plastid phosphoglycerate mutase protein (Fragment)... [more]
A0A7S0F1H7_9CRYP7.530e-4644.50Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S4C0X0_CHRCT1.310e-4338.70Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S4I552_9STRA1.610e-4337.35Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
L1ISC6_GUITC4.220e-4044.44Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
R1DPI0_EMIHU1.380e-3637.20Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A812MB86_9DINO1.160e-3540.17Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A2J6K5X6_LACSA7.630e-3442.86Uncharacterized protein n=2 Tax=Lactuca TaxID=4235... [more]
UPI0007EF521C9.790e-3441.67LOW QUALITY PROTEIN: probable 2-carboxy-D-arabinit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1503contigE-fasciculatus_F_contig1503:6847..11004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score612.1
Seed ortholog evalue1.5e-172
Seed eggNOG ortholog2880.D8LFT7
KEGG koko:K22200
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0047538
EggNOG free text desc.regulation of pentose-phosphate shunt
EggNOG OGsCOG0588@1,KOG0235@2759
EC3.1.3.63
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionplastid phosphoglycerate mutase protein precursor
Ec32 orthologEc-01_000980.1
Exons5
Model size1217
Cds size969
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927983.5189543-UTR-E-fasciculatus_F_contig1503:6846..69481622927983.5189543-UTR-E-fasciculatus_F_contig1503:6846..6948Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1503 6847..6948 -
1695995777.8231184-UTR-E-fasciculatus_F_contig1503:6846..69481695995777.8231184-UTR-E-fasciculatus_F_contig1503:6846..6948Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1503 6847..6948 -
1622927983.6031573-UTR-E-fasciculatus_F_contig1503:10538..105981622927983.6031573-UTR-E-fasciculatus_F_contig1503:10538..10598Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1503 10539..10598 -
1695995777.8672442-UTR-E-fasciculatus_F_contig1503:10538..105981695995777.8672442-UTR-E-fasciculatus_F_contig1503:10538..10598Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1503 10539..10598 -
1622927983.6191845-UTR-E-fasciculatus_F_contig1503:10918..110041622927983.6191845-UTR-E-fasciculatus_F_contig1503:10918..11004Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1503 10919..11004 -
1695995777.8755312-UTR-E-fasciculatus_F_contig1503:10918..110041695995777.8755312-UTR-E-fasciculatus_F_contig1503:10918..11004Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1503 10919..11004 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927983.5411868-CDS-E-fasciculatus_F_contig1503:6948..72791622927983.5411868-CDS-E-fasciculatus_F_contig1503:6948..7279Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1503 6949..7279 -
1695995777.833969-CDS-E-fasciculatus_F_contig1503:6948..72791695995777.833969-CDS-E-fasciculatus_F_contig1503:6948..7279Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1503 6949..7279 -
1622927983.5547621-CDS-E-fasciculatus_F_contig1503:7738..78311622927983.5547621-CDS-E-fasciculatus_F_contig1503:7738..7831Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1503 7739..7831 -
1695995777.8425727-CDS-E-fasciculatus_F_contig1503:7738..78311695995777.8425727-CDS-E-fasciculatus_F_contig1503:7738..7831Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1503 7739..7831 -
1622927983.571386-CDS-E-fasciculatus_F_contig1503:9539..97781622927983.571386-CDS-E-fasciculatus_F_contig1503:9539..9778Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1503 9540..9778 -
1695995777.8508518-CDS-E-fasciculatus_F_contig1503:9539..97781695995777.8508518-CDS-E-fasciculatus_F_contig1503:9539..9778Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1503 9540..9778 -
1622927983.5878553-CDS-E-fasciculatus_F_contig1503:10232..105381622927983.5878553-CDS-E-fasciculatus_F_contig1503:10232..10538Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1503 10233..10538 -
1695995777.8590472-CDS-E-fasciculatus_F_contig1503:10232..105381695995777.8590472-CDS-E-fasciculatus_F_contig1503:10232..10538Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1503 10233..10538 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1503.3565.1prot_E-fasciculatus_F_contig1503.3565.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1503 6949..10538 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1503.3565.1

>prot_E-fasciculatus_F_contig1503.3565.1 ID=prot_E-fasciculatus_F_contig1503.3565.1|Name=mRNA_E-fasciculatus_F_contig1503.3565.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=323bp
MRRPGRPRPAPGGFLLALATARKSFTRAFCFGGGSSGGNVGKRLFRGTAA
ESSAAKASTGPRSLATATPPESPFPPGDDGELVSFFLLRHGQTNFNAIGR
IQGTLDSSILTEQGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLE
CVRQELRKSELSKDFETVEIVPDIREIELFEWQGQLKEDIIKNNPEQYAS
WVADPSNFNFSGRYPARDLWERAGNAWDQIRSLQSIQDQPRTLVVAHNAI
NQALLWTALGCDTTYFRKLSWPNCAVLELQWRRGEARAERYRWVVPEASG
FVEAADAARLLKDGEDDNRYTL*
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mRNA from alignment at E-fasciculatus_F_contig1503:6847..11004-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1503.3565.1 ID=mRNA_E-fasciculatus_F_contig1503.3565.1|Name=mRNA_E-fasciculatus_F_contig1503.3565.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4158bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1503:6847..11004- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CATGCACACTCTGCGCTGCCGTTTGTTTCCCAATCGTGGGTGTCCGCTTC AGTCCTTTTGAGTGGGCGTGTGGACATCTCCCTCAGGTGCGTTGTGTTCT CCGGTCTCGTTGGAGTCTTGAGTGTGGTCTGTGTGTTTCGTGTGCCTTAT CGGAGTAATAGGGGGCAGCAGTGGGAATGTTTCCTGTGTTTCGTTTCATT TCGTTTTCGTGACTACTGCTGCTGGACTGCTGTACTCCACCTGCAGAGCT GCTCAACTTGCATCTCTCTTGTTTCACTTGCAGTGCCCGACTTCCCGAGC CCGGGAGACATGCCGTCGCTTATTCAAACTTATCCACAACATGCTTGTGG CAACTGCTGTTGCCCGGTGAAGCCACCTTTAACCCTCACATTATCCCTCC ACTCAGGGTTCAAACATCAAACCGAGTCGGTCACACAACCAACGACCGCT TGAGGGTTCATAAGAGATGCGGAGGCCAGGTAGACCGCGACCAGCCCCAG GCGGCTTCCTGTTAGCCTTGGCCACAGCCAGGAAGAGCTTCACCCGGGCC TTCTGCTTCGGTGGCGGCAGCAGCGGCGGCAACGTTGGGAAGCGGCTTTT TCGGGGCACTGCGGCGGAATCGTCTGCTGCGAAAGCCAGCACCGGTCCCC GCAGTCTTGCAACCGCAACTCCGCCAGAGTCGCCCTTTCCGCCTGGAGAT GACGGCGAGCTCGTGTCCTTCTTCTTGTTACGACACGGGCAGACCAATTT CAACGCCATAGGGCGTATCCAGGTGCGTGTTGTGTGCTGTTTTTGTGGGC GAGTGCTCTGTCCTAGGGAAAAAACGCTGCTCTCTACATTGACTTCCTCT CGCAGCACATCGATCATGCGTCATGGATGTATAACACAGCCGTGACGTCG AGCAGTTGACGACGAGCAGTCAGAGGGTCTACTGCCGTATGCGTGGCGGC GCTGTGCGTGATTGTCGTCAACCTATCTGAGCCGTGCGTGAGGCGATGCT CTAGGGAACACGTATGTTGCGATCGCTCGAGCGCTCGCACCTCATCTAGC TGTAGGTCATCCTCAGCAGTAGTATTTTAGTGTCGAAGCCCCAAGTTGTT CGCGCCCAGCCGAAATTTCGCCGAAATTTCTGCCAGTACAAGGCAATGTG GGTTGTCATTCCAAAGACGAACTCTGCTTAGTGCTATGTATGTACCCTCT TGTTCTGTTGGGGTCTCTTGCTGCAGGGAACTTTAGATTCGTCTATCCTG ACCGAGCAAGGCATCTCGCAAGCGTTGGAGGCTGGCAAGACGCTTGCCTC GTACGCCGACCTGGATCTGGGTCCCACGGTGGTAGTGTCTCCGATGGGCC GGGCTCAGCAGACGCTGGAGTGCGTGCGGCAGGAGCTTAGGAAGAGCGAG CTTAGCAAGGACTTCGAGACCGTGGAAATCGTGCCCGACATTCGCGAAAT CGAGCTCTTCGAGTGGTAAGTTTGTTGTTGTTGTTGTTGTTGTCTTCACA TTAAACCGTATGCTAATTGCTAAATGCCAAAATCTAGCAAAGACTCGGCC CGTGGCCACAAAAGTGCTAGAGTGGCTTAACATTTAACATTCGCGCCGAC CATGTTTTCCTTCGTAGAAAGTAGGCATCACAGAAAGACGGAGCAACTCC TGTTGGAGATACTTCTTGGAAAACATTCGCGCCGAACGTGGTTCTTTCGT AAAAAAGTAGTAAAAAAAGTAGTAAAAAGAGTAGGCATTACAGAAAGACG GAGTAACTCCTATTGGAGATACTTCTTGGAAACATTCGCGCCGACCGTGT TTCTTTCGTAAGAAAAGTAGGCATGACAAGAAGACGAAGTAACTGTTGGA GATAATTCTTGGAGTTTGTGTGTTGAGACTTTACAGCAGCTGGGATTGAG AACAACTTGGATGCTGGGCTGTGTTGAGTCTGTTAAAGTTAATTACAGCA GTAGTACCGTGAGAAACCAGCGATGCCAGCCGGCACCGTATTTTGTGTGC GGCTGTGTTTGCGAGTTCGAAGGTGTTCTACCGTTGTTGTTGTTGTTGTT GTCGTTGTTGTCTTGACATTCAAAACCGTTCCGGTCTCAGCTCAGTAGTA CTGTACCTTCTAATGTCCGTACTGGTCCAACTGACGCAAACGCCTTCCCA GGGTGTGTTAGGCGGAGATGCGGTCTTGTTTTGTGCCCTACGGCTGTCTC CGCTGTTTTACTCGCGGCATCTCTCGTCGCTACGGCATCCAATGGATTTT GGCGTGCGTTTAGCCGCAAACGTTGACGGGACTCGTATCTCTAAAGAGGT GTTTCCTCGAACATCCCCAGGCTGTCCGAAAGGGGCTGGACGGCCCGGGT GCAGCAGAACGCAGCGCACGAAACTTGGTTATCTGCAGCCGTACTCGCGT GTGTTGGGGCGTTGCAAACGTGTGCAAGCTAAATATGCTTTTCCAGCTCT GCCAAAGGCAAGAAAAGGCACCTGGCGAGCGCTTTCCACCGCAGCTTGTT CACTTGAAGACAAGCTGGAACACTGCTGTAAGCAGGCACGGGTCATAGGC CGCGTCAAAAACCAAACCGCGGCGATGGAACCTGTTGGACTTTTGCAAGT TCTCACTCGGGTGTGTTTCCTTTTGGAGGGTGCATGTAGCGCATGAAGAA AGAGAGAAAACATTTTCAGGTCAAACCCGTCCTCCCAACCTCTCGCGGCC AACCTTCTCCAGCTTGTGATCGGTGTCCATTCAACCTTCGCCTCTGGCCA TTGGTGTGCCTCGTTCTTCGTCCGTTGGGGCTCTCTCTCTCTGGCTGCCT CTTTTTTAGAAAATGTACGTACAATCACTTCATGCTACCCTTTATCGCAG TTGCGTGTTGCAGGCGATGTTTACAATGCCTACATACCTCCGGTCGTAGA GGTACACCCCCATTGACCAAGACTAAACGTACCCCGTAAATTTGCCGGAT CTGCATGGTACCATGATCCTCCGGCCACGTCGGCTACAGCAGTCCTCAAT GTTTGTCCAACTCACCGCAGCTACGGAATGAACTCTTCCAAATCAGCAGC CGTGATTGCCATCCGCTCCTTTTACCTACTACTGCTCCCTTTCGTTTTGC AAATTCCGGCAAACTGCTCAGCCCGACACATTGTTCCGCGGTTTCCGTCC GTACGCGTGTTTTCCCCGCACAGGCAGGGACAGCTGAAGGAAGACATAAT CAAGAATAATCCGGAGCAGTACGCCTCGTGGGTGGCAGACCCGTCCAATT TTAACTTTTCCGGAAGGTAAGCAAGCAAGCCCGCCGCGGACGGCCTTGCT TTTATTCTGGTAGCTGCAGTTTTATCTGCGAAAGGAAAGGCGCTCACGAT TTGGCGTGGAGTTAGTTGTCCGTGATGGTGGCACGCCGCGTTCTTCTCCC GACCGTGTTGCCCTGCTCCTTTTTTATTCTGGAAAATAGCGTTGTACATG CGATGTCCCCGATGCGAAAGATCATTGTCTTCGTGGGCAGTGTTTGTTGC ACCTTTTTTTTTTAGGCAATACAGAGTATGCATAGAATGAAATCAAAGAA ACACTATCCTTGTCGAGCGAGATGTAGCCACAGTCGAAGTGGATGGGCTG AAGCTTTTTGCTGCGGCTTGACGCATCGCTCCAAATATATATATTTTTTT CAACATGTTTGCCGTCGGAACGCACCACAATCACCCCTACCAACACACAT GTTCCCGCACATCCGGCTGGCGCAGATACCCCGCGAGAGACTTGTGGGAA AGGGCCGGCAACGCCTGGGACCAGATCCGCTCCCTCCAGTCCATCCAGGA CCAGCCGCGGACCCTCGTCGTCGCGCACAACGCCATCAACCAGGCGCTCC TCTGGACCGCCCTAGGCTGCGACACGACCTACTTCCGAAAGCTGTCGTGG CCGAACTGCGCGGTGCTGGAGCTGCAGTGGCGGCGCGGGGAGGCGAGGGC GGAGCGGTACCGGTGGGTCGTGCCCGAGGCGTCGGGCTTCGTGGAGGCGG CGGACGCGGCGCGGCTTCTCAAGGACGGCGAAGACGACAACCGATACACC CTTTGAGACTGGGTCGATCACGCGTGGCGGCGGCGAGATGACACAACCGA TACGCCCCGTGAGATTGGATCGATCACACGCGGCGGCGGCAAGATGACAT TTTTGAGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1503:6847..11004-

>mRNA_E-fasciculatus_F_contig1503.3565.1 ID=mRNA_E-fasciculatus_F_contig1503.3565.1|Name=mRNA_E-fasciculatus_F_contig1503.3565.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1938bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1503:6847..11004- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGGAGGCCAGGTAGACCGCGACCAGCCCCAGGCGGCTTCCTGTTAGC
CTTGGCCACAGCCAGGAAGAGCTTCACCCGGGCCTTCTGCTTCGGTGGCG
GCAGCAGCGGCGGCAACGTTGGGAAGCGGCTTTTTCGGGGCACTGCGGCG
GAATCGTCTGCTGCGAAAGCCAGCACCGGTCCCCGCAGTCTTGCAACCGC
AACTCCGCCAGAGTCGCCCTTTCCGCCTGGAGATGACGGCGAGCTCGTGT
CCTTCTTCTTGTTACGACACGGGCAGACCAATTTCAACGCCATAGGGCGT
ATCCAGATGCGGAGGCCAGGTAGACCGCGACCAGCCCCAGGCGGCTTCCT
GTTAGCCTTGGCCACAGCCAGGAAGAGCTTCACCCGGGCCTTCTGCTTCG
GTGGCGGCAGCAGCGGCGGCAACGTTGGGAAGCGGCTTTTTCGGGGCACT
GCGGCGGAATCGTCTGCTGCGAAAGCCAGCACCGGTCCCCGCAGTCTTGC
AACCGCAACTCCGCCAGAGTCGCCCTTTCCGCCTGGAGATGACGGCGAGC
TCGTGTCCTTCTTCTTGTTACGACACGGGCAGACCAATTTCAACGCCATA
GGGCGTATCCAGGGAACTTTAGATTCGTCTATCCTGACCGAGCAAGGCAT
CTCGCAAGCGTTGGAGGCTGGCAAGACGCTTGCCTCGTACGCCGACCTGG
ATCTGGGTCCCACGGTGGTAGTGTCTCCGATGGGCCGGGCTCAGCAGACG
CTGGAGTGCGTGCGGCAGGAGCTTAGGAAGAGCGAGCTTAGCAAGGACTT
CGAGACCGTGGAAATCGTGCCCGACATTCGCGAAATCGAGCTCTTCGAGT
GGGAACTTTAGATTCGTCTATCCTGACCGAGCAAGGCATCTCGCAAGCGT
TGGAGGCTGGCAAGACGCTTGCCTCGTACGCCGACCTGGATCTGGGTCCC
ACGGTGGTAGTGTCTCCGATGGGCCGGGCTCAGCAGACGCTGGAGTGCGT
GCGGCAGGAGCTTAGGAAGAGCGAGCTTAGCAAGGACTTCGAGACCGTGG
AAATCGTGCCCGACATTCGCGAAATCGAGCTCTTCGAGTGGCAGGGACAG
CTGAAGGAAGACATAATCAAGAATAATCCGGAGCAGTACGCCTCGTGGGT
GGCAGACCCGTCCAATTTTAACTTTTCCGGAAGGCAGGGACAGCTGAAGG
AAGACATAATCAAGAATAATCCGGAGCAGTACGCCTCGTGGGTGGCAGAC
CCGTCCAATTTTAACTTTTCCGGAAGATACCCCGCGAGAGACTTGTGGGA
AAGGGCCGGCAACGCCTGGGACCAGATCCGCTCCCTCCAGTCCATCCAGG
ACCAGCCGCGGACCCTCGTCGTCGCGCACAACGCCATCAACCAGGCGCTC
CTCTGGACCGCCCTAGGCTGCGACACGACCTACTTCCGAAAGCTGTCGTG
GCCGAACTGCGCGGTGCTGGAGCTGCAGTGGCGGCGCGGGGAGGCGAGGG
CGGAGCGGTACCGGTGGGTCGTGCCCGAGGCGTCGGGCTTCGTGGAGGCG
GCGGACGCGGCGCGGCTTCTCAAGGACGGCGAAGACGACAACCGATACAC
CCTTTGAATACCCCGCGAGAGACTTGTGGGAAAGGGCCGGCAACGCCTGG
GACCAGATCCGCTCCCTCCAGTCCATCCAGGACCAGCCGCGGACCCTCGT
CGTCGCGCACAACGCCATCAACCAGGCGCTCCTCTGGACCGCCCTAGGCT
GCGACACGACCTACTTCCGAAAGCTGTCGTGGCCGAACTGCGCGGTGCTG
GAGCTGCAGTGGCGGCGCGGGGAGGCGAGGGCGGAGCGGTACCGGTGGGT
CGTGCCCGAGGCGTCGGGCTTCGTGGAGGCGGCGGACGCGGCGCGGCTTC
TCAAGGACGGCGAAGACGACAACCGATACACCCTTTGA
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