mRNA_E-fasciculatus_F_contig15023.3562.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15023.3562.1
Unique NamemRNA_E-fasciculatus_F_contig15023.3562.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig15023.3562.1 vs. uniprot
Match: A0A6H5KI15_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI15_9PHAE)

HSP 1 Score: 320 bits (820), Expect = 3.000e-107
Identity = 175/268 (65.30%), Postives = 180/268 (67.16%), Query Frame = 1
Query:    1 QILALRWAYFKDPWNRFDFFIVLGSTAGLVSLLFLGSNYGSIITVIRTFRVGRVLRLVRGLGPMAQLFQTLLMTLPSLVNVGALLFLLFFIFAAMGVQLYAKVCLCGALNAQANFRSFWDTMVLLLRFSTGENWNGFMYDVAAERDGCRSDPEYDPDVCGFTSHDNCIAIDGCGSWTIYPYMI------------------------------------SFTFLITFVFLNLFIGVILDGFDTAKEESEDFITEEDFARFAEHWSSFD 696
            QILALRWAYFKDPWNRFDFFIVLGSTAGL+SLLFL S YG+IITV                                              FAAMGVQLYAKV L GALNAQANFRSFWDTMVLLLRFSTGENWNGFM+DVAAERDGCRSDPEYDPDVCGFTSHDNCI IDGCGSWTIYPYMI                                    SFTFLITFVFLNLFIGVILDGFD+AKEESEDFITEEDF RFAEHWS+FD
Sbjct:   30 QILALRWAYFKDPWNRFDFFIVLGSTAGLLSLLFLDSKYGTIITVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAAMGVQLYAKVGLEGALNAQANFRSFWDTMVLLLRFSTGENWNGFMHDVAAERDGCRSDPEYDPDVCGFTSHDNCIPIDGCGSWTIYPYMIRYTTFCIRPTPTRPTGPLTVALASVRVVAPPSPPSVSFTFLITFVFLNLFIGVILDGFDSAKEESEDFITEEDFTRFAEHWSTFD 297          
BLAST of mRNA_E-fasciculatus_F_contig15023.3562.1 vs. uniprot
Match: D8LI93_ECTSI (Similar to sodium channel, voltage-gated, type IX, alpha isoform 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI93_ECTSI)

HSP 1 Score: 335 bits (859), Expect = 3.830e-103
Identity = 172/232 (74.14%), Postives = 179/232 (77.16%), Query Frame = 1
Query:    1 QILALRWAYFKDPWNRFDFFIVLGSTAGLVSLLFLGSNYGSIITVIRTFRVGRVLRLVRGLGPMAQLFQTLLMTLPSLVNVGALLFLLFFIFAAMGVQLYAKVCLCGALNAQANFRSFWDTMVLLLRFSTGENWNGFMYDVAAERDGCRSDPEYDPDVCGFTSHDNCIAIDGCGSWTIYPYMISFTFLITFVFLNLFIGVILDGFDTAKEESEDFITEEDFARFAEHWSSFD 696
            +ILALRWAYFKDPWNRFDFFIVLGSTAGL+SLLFL SNYG++IT                                               FAAMGVQLYAKV L GALNAQANFRSFWDTMVLLLRFSTGENWNGFMYDVAAERDGCRSDPEYDPDVCGFTSHDNCI IDGCGSWTIYPYMISFTFLITFVFLNLFIGVILDGFD+AKEES+DFITEED  RFAEHWS+FD
Sbjct: 1083 KILALRWAYFKDPWNRFDFFIVLGSTAGLLSLLFLDSNYGTVITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAAMGVQLYAKVGLEGALNAQANFRSFWDTMVLLLRFSTGENWNGFMYDVAAERDGCRSDPEYDPDVCGFTSHDNCIPIDGCGSWTIYPYMISFTFLITFVFLNLFIGVILDGFDSAKEESDDFITEEDLTRFAEHWSNFD 1314          
BLAST of mRNA_E-fasciculatus_F_contig15023.3562.1 vs. uniprot
Match: D7FVE6_ECTSI (Voltage Gated Calcium/Sodium Channel subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVE6_ECTSI)

HSP 1 Score: 331 bits (849), Expect = 4.730e-101
Identity = 163/232 (70.26%), Postives = 189/232 (81.47%), Query Frame = 1
Query:    1 QILALRWAYFKDPWNRFDFFIVLGSTAGLVSLLFLGSNYGSIITVIRTFRVGRVLRLVRGLGPMAQLFQTLLMTLPSLVNVGALLFLLFFIFAAMGVQLYAKVCLCGALNAQANFRSFWDTMVLLLRFSTGENWNGFMYDVAAERDGCRSDPEYDPDVCGFTSHDNCIAIDGCGSWTIYPYMISFTFLITFVFLNLFIGVILDGFDTAKEESEDFITEEDFARFAEHWSSFD 696
            +ILA R AYF DPWNRFD FIV+G+  GL  L   G +YGSI T+IRTFR+GRVLRLVRGL  MAQLF TLL+TLPSL NVGALLFL FFI+A MGVQL+A V L GA++ QANF++FW +MVLLLRFSTGENWNGFMYD+ AER+ C S+P YDPD+CGFTSH NC  ++GCGSW+I+PYMISFT  IT+VF+NLFIGVILDGFD A     D I +EDFARFA HW+ FD
Sbjct: 1337 KILAFRRAYFIDPWNRFDIFIVIGTNLGLAMLWMTGRSYGSIATIIRTFRIGRVLRLVRGLESMAQLFNTLLLTLPSLGNVGALLFLQFFIYAVMGVQLFATVGLRGAVDEQANFQTFWGSMVLLLRFSTGENWNGFMYDMVAEREDCVSNPVYDPDMCGFTSHANCTPLNGCGSWSIFPYMISFTLTITYVFMNLFIGVILDGFDAASASDHDVIKQEDFARFASHWAEFD 1568          
BLAST of mRNA_E-fasciculatus_F_contig15023.3562.1 vs. uniprot
Match: A0A6H5JIB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIB7_9PHAE)

HSP 1 Score: 320 bits (819), Expect = 1.770e-97
Identity = 163/253 (64.43%), Postives = 189/253 (74.70%), Query Frame = 1
Query:    1 QILALRWAYFKDPWNRFDFFIVLGSTAGLVSLLFLGSNYGSIITVIRTFRVGRVLRLVRGLGPMAQLFQTLLMTLPSLVNVGALLFLLFFIFAAMGVQLYAKVC---------------------LCGALNAQANFRSFWDTMVLLLRFSTGENWNGFMYDVAAERDGCRSDPEYDPDVCGFTSHDNCIAIDGCGSWTIYPYMISFTFLITFVFLNLFIGVILDGFDTAKEESEDFITEEDFARFAEHWSSFD 696
            +ILA R AYF DPWNRFD FIV+G+  GL  L   G +YGSI T+IRTFR+GRVLRLVRGL  MAQLF TLL+TLPSL NVGALLFL FFI+A MGVQL+A V                      L GA++ QANF++FW +MVLLLRFSTGENWNGFMYD+ AER+ C S+P YDPD+CGFTSH NC  ++GCGSW+I+PYMISFT  IT+VF+NLFIGVILDGFD A     D I +EDFARFA HW+ FD
Sbjct:  839 KILAFRRAYFIDPWNRFDIFIVMGTNLGLAMLWMTGRSYGSIATIIRTFRIGRVLRLVRGLESMAQLFNTLLLTLPSLGNVGALLFLQFFIYAVMGVQLFATVSEPGHLFSSLWTHNGYALIMVGLRGAVDEQANFQTFWGSMVLLLRFSTGENWNGFMYDMVAEREDCVSNPVYDPDMCGFTSHANCTPLNGCGSWSIFPYMISFTLTITYVFMNLFIGVILDGFDAASASDHDVIKQEDFARFASHWAEFD 1091          
BLAST of mRNA_E-fasciculatus_F_contig15023.3562.1 vs. uniprot
Match: A0A812VYI9_SYMMI (Scn4ab protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VYI9_SYMMI)

HSP 1 Score: 266 bits (679), Expect = 2.430e-82
Identity = 134/232 (57.76%), Postives = 169/232 (72.84%), Query Frame = 1
Query:    1 QILALRWAYFKDPWNRFDFFIVLGSTAGLVSLLFLGSNYGSIITVIRTFRVGRVLRLVRGLGPMAQLFQTLLMTLPSLVNVGALLFLLFFIFAAMGVQLYAKVCLCGALNAQANFRSFWDTMVLLLRFSTGENWNGFMYDVAAERDGCRSDPEYDPDVCGFTSHDNCIAIDGCGSWTIYPYMISFTFLITFVFLNLFIGVILDGFDTAKEESEDFITEEDFARFAEHWSSFD 696
            +I AL+  YF D WNRFDF +V+G+ AGL+ L   GSN G  +T++RTFR+ R+LRL+ G   ++QLF TLL+TLP L N+ ALLFLLFFI+A MGVQL+AKV   G  +  ANFR F   M+ LLRFSTGENW+GFMYDV  +   C +DP+YD   CGF     C  ++GCGS+ IYPYM+SFT +ITFVFLNLFIGVIL+GF +A +ES   +  EDF RFA+HWS +D
Sbjct:   47 KISALKSKYFSDMWNRFDFVVVVGTNAGLIFLWISGSNIGMTVTILRTFRIARLLRLMNGAESISQLFNTLLLTLPGLGNIAALLFLLFFIYAVMGVQLFAKVEYSGDHDEHANFRDFGIAMISLLRFSTGENWDGFMYDVGRKSSTCVNDPDYDSAYCGFNDRTGCTPLNGCGSFAIYPYMLSFTVIITFVFLNLFIGVILEGFSSA-DESGKAVKPEDFIRFADHWSHYD 277          
BLAST of mRNA_E-fasciculatus_F_contig15023.3562.1 vs. uniprot
Match: A0A7S2QWF6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QWF6_9STRA)

HSP 1 Score: 226 bits (575), Expect = 3.050e-64
Identity = 117/245 (47.76%), Postives = 160/245 (65.31%), Query Frame = 1
Query:   10 ALRWAYFKDPWNRFDFFIVLGSTAGLVSLLFLGSNYGS--IITVIRTFRVGRVLRLVRGLGPMAQLFQTLLMTLPSLVNVGALLFLLFFIFAAMGVQLYAKVCLCGALNAQANFRSFWDTMVLLLRFSTGENWNGFMYDVA--AERDGCRSDPEYDPDVCGFTSHDNC------------IAIDGCGSWTIYPYMISFTFLITFVFLNLFIGVILDGFDTAKEESEDFITEEDFARFAEHWSSFD 696
            A+ W YF D WNRFDF IV+G+  GL++    G   G+  I TVIRTFR+GR+ RLV G   + QLF TLL+T+P LVN+G LL LL+FIF+ M VQL+A V   G  +  ANFR FW   + LLRFSTGENWNGFM+D+A   + + C  +P Y+  VCG+ S D              + + GCG+  + P+++ F  ++ +VFLNLFIG+IL+GFDTA +E++  I  EDF +F+ HW+ +D
Sbjct: 1396 AMHWLYFDDSWNRFDFLIVMGTLVGLIAKAASGGEGGAQGITTVIRTFRIGRIFRLVNGAESLNQLFNTLLLTIPGLVNIGMLLMLLYFIFSVMAVQLFATVGYNGDYSPDANFRDFWTAFMTLLRFSTGENWNGFMHDLADGPDPETCNPNPTYNSTVCGYASRDESRCNAAFEGEDWSVDVGGCGNKVVIPFLVIFQLMVGYVFLNLFIGIILEGFDTA-DETKRSIKPEDFEKFSAHWADYD 1639          
BLAST of mRNA_E-fasciculatus_F_contig15023.3562.1 vs. uniprot
Match: A0A8K1CRX9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CRX9_PYTOL)

HSP 1 Score: 218 bits (555), Expect = 1.470e-61
Identity = 113/232 (48.71%), Postives = 152/232 (65.52%), Query Frame = 1
Query:    1 QILALRWAYFKDPWNRFDFFIVLGSTAGLVSLLFLGSNYGSIITVIRTFRVGRVLRLVRGLGPMAQLFQTLLMTLPSLVNVGALLFLLFFIFAAMGVQLYAKVCLCGALNAQANFRSFWDTMVLLLRFSTGENWNGFMYDVAAERDGCRSDPEYDPDVCGFTSHDNCIAIDGCGSWTIYPYMISFTFLITFVFLNLFIGVILDGFDTAKEESEDFITEEDFARFAEHWSSFD 696
            +I  L   Y+KD WNRFDF IVLGS  GL+     GS+ G++ T  R FRVGR+ RL++    + QLF TLL+TLPSLVN+G LLFL+FFI+AAMGVQL+AKV     +    NF++    MV L+R +TGE WN  MY++A+  D C  DP YDP +CGF +  NC+A++GCGS   + Y+ SFT L+TF+ LN+FI V+L+GF   K+  +  +    +  F   WS FD
Sbjct: 1221 KITGLGHYYWKDAWNRFDFVIVLGSFIGLLYQWAGGSSVGALATSFRGFRVGRLFRLIQSAPSLRQLFNTLLITLPSLVNIGGLLFLVFFIYAAMGVQLFAKVKFRDLITPTTNFQTIERAMVTLIRCATGERWNDVMYELASTED-CVEDPTYDPTMCGFNNSPNCVALNGCGSPVAFIYLYSFTLLVTFILLNIFIAVVLEGFANEKDRMDGILLPHHYESFVNTWSLFD 1451          
BLAST of mRNA_E-fasciculatus_F_contig15023.3562.1 vs. uniprot
Match: A0A2D4C6S1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C6S1_PYTIN)

HSP 1 Score: 218 bits (555), Expect = 1.470e-61
Identity = 112/232 (48.28%), Postives = 155/232 (66.81%), Query Frame = 1
Query:    1 QILALRWAYFKDPWNRFDFFIVLGSTAGLVSLLFLGSNYGSIITVIRTFRVGRVLRLVRGLGPMAQLFQTLLMTLPSLVNVGALLFLLFFIFAAMGVQLYAKVCLCGALNAQANFRSFWDTMVLLLRFSTGENWNGFMYDVAAERDGCRSDPEYDPDVCGFTSHDNCIAIDGCGSWTIYPYMISFTFLITFVFLNLFIGVILDGFDTAKEESEDFITEEDFARFAEHWSSFD 696
            ++  L   Y+KD WN FDF +VLGS  G++     GS+ G++ T IR+FRVGR+ RLV+    + QLF TLL+TLPSLVN+G LLFL+FFI+AAMGVQL+AKV     +   ANF+S    MV L+R +TGE WN  MY++A + D C  DP+YDP +CGF +   C+ ++GCGS   + YM SFT +++F+ LN+FI VIL+GF   K+ +E  +  + +  F   WS FD
Sbjct: 1293 KVYGLGHYYWKDRWNIFDFVLVLGSFLGMLYQWVGGSSVGTVATSIRSFRVGRLFRLVQSAPSLRQLFNTLLITLPSLVNIGGLLFLVFFIYAAMGVQLFAKVKFGELITRTANFQSITRAMVTLVRCATGERWNDMMYELATQSD-CTPDPDYDPHMCGFNNTLGCVDLNGCGSPVAFIYMYSFTLIVSFILLNIFIAVILEGFSNEKDRTEGILLPQHYENFVTTWSMFD 1523          
BLAST of mRNA_E-fasciculatus_F_contig15023.3562.1 vs. uniprot
Match: G4YKH5_PHYSP (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=G4YKH5_PHYSP)

HSP 1 Score: 217 bits (553), Expect = 2.690e-61
Identity = 110/232 (47.41%), Postives = 155/232 (66.81%), Query Frame = 1
Query:    1 QILALRWAYFKDPWNRFDFFIVLGSTAGLVSLLFLGSNYGSIITVIRTFRVGRVLRLVRGLGPMAQLFQTLLMTLPSLVNVGALLFLLFFIFAAMGVQLYAKVCLCGALNAQANFRSFWDTMVLLLRFSTGENWNGFMYDVAAERDGCRSDPEYDPDVCGFTSHDNCIAIDGCGSWTIYPYMISFTFLITFVFLNLFIGVILDGFDTAKEESEDFITEEDFARFAEHWSSFD 696
            +I+ L   Y+KD WN FDF +VLG+  G++  +F GS+ G+  + +R+FRVGR+ RLV     + QLF TLL+TLPSL N+G LLFL+FFI+AAMGVQL+AKV     +   ANF+S    M+ L+R +TGE WN  MY++A + D C SDP YDP+ CG +S  +CI ++GCGS   + Y+ SFT L+TF+ LN+FI VIL+GF   K+  +  +  + +  F  +WS  D
Sbjct: 1119 KIIGLGKYYWKDRWNVFDFIVVLGALFGVIYQMFGGSSVGAAASTVRSFRVGRLFRLVHSAPSLRQLFNTLLITLPSLANIGGLLFLVFFIYAAMGVQLFAKVKFGELITPTANFQSLLKAMITLVRCATGERWNDMMYELANQED-CISDPPYDPNSCGISSDADCIPLNGCGSPVAFVYLYSFTLLVTFILLNIFIAVILEGFAKEKDREDGVLLPQHYEAFVNNWSKLD 1349          
BLAST of mRNA_E-fasciculatus_F_contig15023.3562.1 vs. uniprot
Match: D0MY98_PHYIT (Voltage-gated Ion Channel (VIC) Superfamily n=15 Tax=Phytophthora TaxID=4783 RepID=D0MY98_PHYIT)

HSP 1 Score: 217 bits (552), Expect = 3.670e-61
Identity = 107/232 (46.12%), Postives = 157/232 (67.67%), Query Frame = 1
Query:    1 QILALRWAYFKDPWNRFDFFIVLGSTAGLVSLLFLGSNYGSIITVIRTFRVGRVLRLVRGLGPMAQLFQTLLMTLPSLVNVGALLFLLFFIFAAMGVQLYAKVCLCGALNAQANFRSFWDTMVLLLRFSTGENWNGFMYDVAAERDGCRSDPEYDPDVCGFTSHDNCIAIDGCGSWTIYPYMISFTFLITFVFLNLFIGVILDGFDTAKEESEDFITEEDFARFAEHWSSFD 696
            +I+ L   Y+K+PWN FDF +VLG+  G++  +F GS+ G+  + +R+FRVGR+ RLV     + QLF TLL+TLPSL N+G LLFL+FFI+AAMGVQL+AK+     + + ANF+S    M+ L+R +TGE WN  MY++A ++D C  DP YDP+ CG +S  +C+ ++GCGS   + Y+ SFT L+TF+ LN+FI VIL+GF   K+  +  +  + +  F + W  FD
Sbjct: 1122 KIIGLGKYYWKEPWNIFDFIVVLGTLFGVIYQMFGGSSIGTAASTVRSFRVGRLFRLVHSAPSLRQLFNTLLITLPSLANIGGLLFLVFFIYAAMGVQLFAKIKFGDLITSTANFQSLLAAMITLVRCATGERWNDVMYELANQKD-CVPDPPYDPNSCGISSAVDCVPLNGCGSPVAFVYLYSFTLLVTFILLNIFIAVILEGFAKEKDRQDGVLLPQHYETFVKKWCQFD 1352          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15023.3562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KI15_9PHAE3.000e-10765.30Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D8LI93_ECTSI3.830e-10374.14Similar to sodium channel, voltage-gated, type IX,... [more]
D7FVE6_ECTSI4.730e-10170.26Voltage Gated Calcium/Sodium Channel subunit alpha... [more]
A0A6H5JIB7_9PHAE1.770e-9764.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A812VYI9_SYMMI2.430e-8257.76Scn4ab protein n=1 Tax=Symbiodinium microadriaticu... [more]
A0A7S2QWF6_9STRA3.050e-6447.76Hypothetical protein (Fragment) n=1 Tax=Triparma p... [more]
A0A8K1CRX9_PYTOL1.470e-6148.71Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4C6S1_PYTIN1.470e-6148.28Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
G4YKH5_PHYSP2.690e-6147.41Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]
D0MY98_PHYIT3.670e-6146.12Voltage-gated Ion Channel (VIC) Superfamily n=15 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15023contigE-fasciculatus_F_contig15023:347..2139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score330.9
Seed ortholog evalue4.9e-88
Seed eggNOG ortholog2880.D8LI93
KEGG koko:K04851,ko:K04857
KEGG TC1.A.1.11.1,1.A.1.11.2,1.A.1.11.20,1.A.1.11.21
KEGG Pathwayko04010,ko04020,ko04022,ko04024,ko04218,ko04260,ko04261,ko04270,ko04530,ko04713,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04911,ko04912,ko04921,ko04924,ko04925,ko04927,ko04930,ko04934,ko04973,ko05010,ko05031,ko05410,ko05412,ko05414,map04010,map04020,map04022,map04024,map04218,map04260,map04261,map04270,map04530,map04713,map04723,map04724,map04725,map04726,map04727,map04728,map04911,map04912,map04921,map04924,map04925,map04927,map04930,map04934,map04973,map05010,map05031,map05410,map05412,map05414
EggNOG free text desc.membrane depolarization during action potential
EggNOG OGsKOG2301@1,KOG2301@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Hectar predicted targeting categorysignal anchor
Exons3
Model size696
Cds size696
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15023.3562.1prot_E-fasciculatus_F_contig15023.3562.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15023 347..2139 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927982.989815-CDS-E-fasciculatus_F_contig15023:346..6641622927982.989815-CDS-E-fasciculatus_F_contig15023:346..664Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15023 347..664 +
1695995777.7257257-CDS-E-fasciculatus_F_contig15023:346..6641695995777.7257257-CDS-E-fasciculatus_F_contig15023:346..664Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15023 347..664 +
1622927983.0052364-CDS-E-fasciculatus_F_contig15023:1184..14171622927983.0052364-CDS-E-fasciculatus_F_contig15023:1184..1417Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15023 1185..1417 +
1695995777.738598-CDS-E-fasciculatus_F_contig15023:1184..14171695995777.738598-CDS-E-fasciculatus_F_contig15023:1184..1417Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15023 1185..1417 +
1622927983.018873-CDS-E-fasciculatus_F_contig15023:1994..21391622927983.018873-CDS-E-fasciculatus_F_contig15023:1994..2139Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15023 1995..2139 +
1695995777.74689-CDS-E-fasciculatus_F_contig15023:1994..21391695995777.74689-CDS-E-fasciculatus_F_contig15023:1994..2139Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15023 1995..2139 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15023.3562.1

>prot_E-fasciculatus_F_contig15023.3562.1 ID=prot_E-fasciculatus_F_contig15023.3562.1|Name=mRNA_E-fasciculatus_F_contig15023.3562.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=232bp
QILALRWAYFKDPWNRFDFFIVLGSTAGLVSLLFLGSNYGSIITVIRTFR
VGRVLRLVRGLGPMAQLFQTLLMTLPSLVNVGALLFLLFFIFAAMGVQLY
AKVCLCGALNAQANFRSFWDTMVLLLRFSTGENWNGFMYDVAAERDGCRS
DPEYDPDVCGFTSHDNCIAIDGCGSWTIYPYMISFTFLITFVFLNLFIGV
ILDGFDTAKEESEDFITEEDFARFAEHWSSFD
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mRNA from alignment at E-fasciculatus_F_contig15023:347..2139+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15023.3562.1 ID=mRNA_E-fasciculatus_F_contig15023.3562.1|Name=mRNA_E-fasciculatus_F_contig15023.3562.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1793bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15023:347..2139+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGATCCTAGCACTCCGGTGGGCGTACTTTAAAGACCCGTGGAACCGGTT CGACTTCTTCATCGTGCTGGGCAGCACCGCGGGCTTAGTGTCGCTCTTGT TTCTCGGCTCAAACTACGGGAGCATCATCACCGTGATCCGCACCTTCAGG GTAGGCCGCGTCCTCCGGCTCGTTCGGGGGCTGGGGCCGATGGCCCAGCT GTTCCAGACGCTGCTCATGACGCTGCCCAGCCTGGTCAACGTGGGGGCTC TGCTCTTCTTGCTCTTCTTCATCTTTGCGGCCATGGGCGTTCAGCTCTAC GCCAAGGTTTGTTTGTGTGTGTGCGTGAGAGAGAGTGGGGAAGGAGGAGA ACGGGGCGGCGAGCCGTTCCCACGAGGGATCCTGCCGTACCGGACCCGGT CTCAAACGCGATTGAGTCGTTTCGCGGATCGAGTTCTTGCTGCTCTCTGC TTCCGCTGCTGTGGTTCTGGCCGGGAAAAAGAAAGATAGACAGAGGCCGA GAGAGAGAGAGAGAAAGAGAGAGGGAGAAGGGGGGGCCATGTTCCTTGTT GTGGTTGTTTTATTGCGCGGCCGGTTCAGCATAGGTGCGCGCCAGCACCA GCCCAACAACATGCTGCTCGAGTTGAAATGCGCGCGGGGCAAGGGCACGA GGGTCAAACAGCGTAGGTAGGTAGGGTAGGTAGGTAGGAAGGTGGGTGGC CTGTAGCCTGTTGTGGCACAGCAGTAAGTGACGCCCTACGTTCACCTCCC AACTCACCCGCTTGCCCGAGCCCATCACCACAAAAAAATATAATTTTGCA CCTGAACAAAAAAAATATACCACCAGGTGGGACTCGAGGGGGCCCTGAAC GCGCAGGCCAACTTCCGCTCATTCTGGGACACGATGGTCTTGCTGCTACG GTTTAGCACGGGCGAGAACTGGAACGGCTTCATGTACGACGTAGCTGCGG AGAGGGACGGGTGCCGGTCTGATCCCGAGTATGACCCCGACGTATGCGGG TTCACGAGCCACGATAACTGCATCGCGATCGACGGGTGCGGCAGCTGGAC CATCTACCCATACATGATCAGGTGCGTGTGTGTGTGTGTGTGTGTGTAAG TGTCTCTGTGCTTTGCCCGCGAAAGAGGCATGTTTGTATCGATGTGCTGT GCCTGAGTTAAAATGAGTACTGACTGGCGCCTTTGTACATGTTGTTGCGG TACAGAGCACGGCTTTTTCTTCAACACAATGACGGGATGTCCGTGAAGCC TTTCGTACGGTACGGGCCAGAACGTGTGGTCGTAGGTGGAACTAGGCAAC CACCACACCAGCAATATCAACCCGGCCCAACAACTATAGCTACATGGTCT CCTGTGGCAATGGGGACGGCCACCTCCCATGTCTCTCGTGTTGCTTTCGC CGTCATGCTCAGGTACACATGGACTTCGTGGAAGAACGGGTACCGTTGGC CTAACCCGGCCCTGGTTACCCCGCTCTACCCCGCCTCAACCAGCCAACAC CTGTCACTCAAGCTGTGTGGCTGGTTCCCTGTAGATACCACCTTTTGCAT CAGAATATGTCCCGCTCACCCCCACGGCCTCGCTCAGCGGTTTCGCTCAC GTCGGTATCGCTGCCGCCCCCTCCCCGCCCTCTTCCTCTTCCGTGCAGCT TCACGTTTTTGATTACCTTCGTGTTCCTGAACCTGTTCATCGGGGTGATC CTGGACGGCTTCGACACCGCCAAGGAGGAGTCGGAGGACTTCATCACGGA GGAGGACTTCGCGAGGTTCGCGGAGCACTGGTCCAGCTTTGAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15023:347..2139+

>mRNA_E-fasciculatus_F_contig15023.3562.1 ID=mRNA_E-fasciculatus_F_contig15023.3562.1|Name=mRNA_E-fasciculatus_F_contig15023.3562.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1392bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15023:347..2139+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGATCCTAGCACTCCGGTGGGCGTACTTTAAAGACCCGTGGAACCGGTT
CGACTTCTTCATCGTGCTGGGCAGCACCGCGGGCTTAGTGTCGCTCTTGT
TTCTCGGCTCAAACTACGGGAGCATCATCACCGTGATCCGCACCTTCAGG
GTAGGCCGCGTCCTCCGGCTCGTTCGGGGGCTGGGGCCGATGGCCCAGCT
GTTCCAGACGCTGCTCATGACGCTGCCCAGCCTGGTCAACGTGGGGGCTC
TGCTCTTCTTGCTCTTCTTCATCTTTGCGGCCATGGGCGTTCAGCTCTAC
GCCAAGGTTTGTTTGTGTCAGATCCTAGCACTCCGGTGGGCGTACTTTAA
AGACCCGTGGAACCGGTTCGACTTCTTCATCGTGCTGGGCAGCACCGCGG
GCTTAGTGTCGCTCTTGTTTCTCGGCTCAAACTACGGGAGCATCATCACC
GTGATCCGCACCTTCAGGGTAGGCCGCGTCCTCCGGCTCGTTCGGGGGCT
GGGGCCGATGGCCCAGCTGTTCCAGACGCTGCTCATGACGCTGCCCAGCC
TGGTCAACGTGGGGGCTCTGCTCTTCTTGCTCTTCTTCATCTTTGCGGCC
ATGGGCGTTCAGCTCTACGCCAAGGTTTGTTTGTGTGGGGCCCTGAACGC
GCAGGCCAACTTCCGCTCATTCTGGGACACGATGGTCTTGCTGCTACGGT
TTAGCACGGGCGAGAACTGGAACGGCTTCATGTACGACGTAGCTGCGGAG
AGGGACGGGTGCCGGTCTGATCCCGAGTATGACCCCGACGTATGCGGGTT
CACGAGCCACGATAACTGCATCGCGATCGACGGGTGCGGCAGCTGGACCA
TCTACCCATACATGATCAGGGGGCCCTGAACGCGCAGGCCAACTTCCGCT
CATTCTGGGACACGATGGTCTTGCTGCTACGGTTTAGCACGGGCGAGAAC
TGGAACGGCTTCATGTACGACGTAGCTGCGGAGAGGGACGGGTGCCGGTC
TGATCCCGAGTATGACCCCGACGTATGCGGGTTCACGAGCCACGATAACT
GCATCGCGATCGACGGGTGCGGCAGCTGGACCATCTACCCATACATGATC
AGCTTCACGTTTTTGATTACCTTCGTGTTCCTGAACCTGTTCATCGGGGT
GATCCTGGACGGCTTCGACACCGCCAAGGAGGAGTCGGAGGACTTCATCA
CGGAGGAGGACTTCGCGAGGTTCGCGGAGCACTGGTCCAGCTTTGACCTT
CACGTTTTTGATTACCTTCGTGTTCCTGAACCTGTTCATCGGGGTGATCC
TGGACGGCTTCGACACCGCCAAGGAGGAGTCGGAGGACTTCATCACGGAG
GAGGACTTCGCGAGGTTCGCGGAGCACTGGTCCAGCTTTGAC
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