mRNA_E-fasciculatus_F_contig15023.3562.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig15023.3562.1 vs. uniprot
Match: A0A6H5KI15_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI15_9PHAE) HSP 1 Score: 320 bits (820), Expect = 3.000e-107 Identity = 175/268 (65.30%), Postives = 180/268 (67.16%), Query Frame = 1
Query: 1 QILALRWAYFKDPWNRFDFFIVLGSTAGLVSLLFLGSNYGSIITVIRTFRVGRVLRLVRGLGPMAQLFQTLLMTLPSLVNVGALLFLLFFIFAAMGVQLYAKVCLCGALNAQANFRSFWDTMVLLLRFSTGENWNGFMYDVAAERDGCRSDPEYDPDVCGFTSHDNCIAIDGCGSWTIYPYMI------------------------------------SFTFLITFVFLNLFIGVILDGFDTAKEESEDFITEEDFARFAEHWSSFD 696
QILALRWAYFKDPWNRFDFFIVLGSTAGL+SLLFL S YG+IITV FAAMGVQLYAKV L GALNAQANFRSFWDTMVLLLRFSTGENWNGFM+DVAAERDGCRSDPEYDPDVCGFTSHDNCI IDGCGSWTIYPYMI SFTFLITFVFLNLFIGVILDGFD+AKEESEDFITEEDF RFAEHWS+FD
Sbjct: 30 QILALRWAYFKDPWNRFDFFIVLGSTAGLLSLLFLDSKYGTIITVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAAMGVQLYAKVGLEGALNAQANFRSFWDTMVLLLRFSTGENWNGFMHDVAAERDGCRSDPEYDPDVCGFTSHDNCIPIDGCGSWTIYPYMIRYTTFCIRPTPTRPTGPLTVALASVRVVAPPSPPSVSFTFLITFVFLNLFIGVILDGFDSAKEESEDFITEEDFTRFAEHWSTFD 297
BLAST of mRNA_E-fasciculatus_F_contig15023.3562.1 vs. uniprot
Match: D8LI93_ECTSI (Similar to sodium channel, voltage-gated, type IX, alpha isoform 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI93_ECTSI) HSP 1 Score: 335 bits (859), Expect = 3.830e-103 Identity = 172/232 (74.14%), Postives = 179/232 (77.16%), Query Frame = 1
Query: 1 QILALRWAYFKDPWNRFDFFIVLGSTAGLVSLLFLGSNYGSIITVIRTFRVGRVLRLVRGLGPMAQLFQTLLMTLPSLVNVGALLFLLFFIFAAMGVQLYAKVCLCGALNAQANFRSFWDTMVLLLRFSTGENWNGFMYDVAAERDGCRSDPEYDPDVCGFTSHDNCIAIDGCGSWTIYPYMISFTFLITFVFLNLFIGVILDGFDTAKEESEDFITEEDFARFAEHWSSFD 696
+ILALRWAYFKDPWNRFDFFIVLGSTAGL+SLLFL SNYG++IT FAAMGVQLYAKV L GALNAQANFRSFWDTMVLLLRFSTGENWNGFMYDVAAERDGCRSDPEYDPDVCGFTSHDNCI IDGCGSWTIYPYMISFTFLITFVFLNLFIGVILDGFD+AKEES+DFITEED RFAEHWS+FD
Sbjct: 1083 KILALRWAYFKDPWNRFDFFIVLGSTAGLLSLLFLDSNYGTVITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAAMGVQLYAKVGLEGALNAQANFRSFWDTMVLLLRFSTGENWNGFMYDVAAERDGCRSDPEYDPDVCGFTSHDNCIPIDGCGSWTIYPYMISFTFLITFVFLNLFIGVILDGFDSAKEESDDFITEEDLTRFAEHWSNFD 1314
BLAST of mRNA_E-fasciculatus_F_contig15023.3562.1 vs. uniprot
Match: D7FVE6_ECTSI (Voltage Gated Calcium/Sodium Channel subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVE6_ECTSI) HSP 1 Score: 331 bits (849), Expect = 4.730e-101 Identity = 163/232 (70.26%), Postives = 189/232 (81.47%), Query Frame = 1
Query: 1 QILALRWAYFKDPWNRFDFFIVLGSTAGLVSLLFLGSNYGSIITVIRTFRVGRVLRLVRGLGPMAQLFQTLLMTLPSLVNVGALLFLLFFIFAAMGVQLYAKVCLCGALNAQANFRSFWDTMVLLLRFSTGENWNGFMYDVAAERDGCRSDPEYDPDVCGFTSHDNCIAIDGCGSWTIYPYMISFTFLITFVFLNLFIGVILDGFDTAKEESEDFITEEDFARFAEHWSSFD 696
+ILA R AYF DPWNRFD FIV+G+ GL L G +YGSI T+IRTFR+GRVLRLVRGL MAQLF TLL+TLPSL NVGALLFL FFI+A MGVQL+A V L GA++ QANF++FW +MVLLLRFSTGENWNGFMYD+ AER+ C S+P YDPD+CGFTSH NC ++GCGSW+I+PYMISFT IT+VF+NLFIGVILDGFD A D I +EDFARFA HW+ FD
Sbjct: 1337 KILAFRRAYFIDPWNRFDIFIVIGTNLGLAMLWMTGRSYGSIATIIRTFRIGRVLRLVRGLESMAQLFNTLLLTLPSLGNVGALLFLQFFIYAVMGVQLFATVGLRGAVDEQANFQTFWGSMVLLLRFSTGENWNGFMYDMVAEREDCVSNPVYDPDMCGFTSHANCTPLNGCGSWSIFPYMISFTLTITYVFMNLFIGVILDGFDAASASDHDVIKQEDFARFASHWAEFD 1568
BLAST of mRNA_E-fasciculatus_F_contig15023.3562.1 vs. uniprot
Match: A0A6H5JIB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIB7_9PHAE) HSP 1 Score: 320 bits (819), Expect = 1.770e-97 Identity = 163/253 (64.43%), Postives = 189/253 (74.70%), Query Frame = 1
Query: 1 QILALRWAYFKDPWNRFDFFIVLGSTAGLVSLLFLGSNYGSIITVIRTFRVGRVLRLVRGLGPMAQLFQTLLMTLPSLVNVGALLFLLFFIFAAMGVQLYAKVC---------------------LCGALNAQANFRSFWDTMVLLLRFSTGENWNGFMYDVAAERDGCRSDPEYDPDVCGFTSHDNCIAIDGCGSWTIYPYMISFTFLITFVFLNLFIGVILDGFDTAKEESEDFITEEDFARFAEHWSSFD 696
+ILA R AYF DPWNRFD FIV+G+ GL L G +YGSI T+IRTFR+GRVLRLVRGL MAQLF TLL+TLPSL NVGALLFL FFI+A MGVQL+A V L GA++ QANF++FW +MVLLLRFSTGENWNGFMYD+ AER+ C S+P YDPD+CGFTSH NC ++GCGSW+I+PYMISFT IT+VF+NLFIGVILDGFD A D I +EDFARFA HW+ FD
Sbjct: 839 KILAFRRAYFIDPWNRFDIFIVMGTNLGLAMLWMTGRSYGSIATIIRTFRIGRVLRLVRGLESMAQLFNTLLLTLPSLGNVGALLFLQFFIYAVMGVQLFATVSEPGHLFSSLWTHNGYALIMVGLRGAVDEQANFQTFWGSMVLLLRFSTGENWNGFMYDMVAEREDCVSNPVYDPDMCGFTSHANCTPLNGCGSWSIFPYMISFTLTITYVFMNLFIGVILDGFDAASASDHDVIKQEDFARFASHWAEFD 1091
BLAST of mRNA_E-fasciculatus_F_contig15023.3562.1 vs. uniprot
Match: A0A812VYI9_SYMMI (Scn4ab protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VYI9_SYMMI) HSP 1 Score: 266 bits (679), Expect = 2.430e-82 Identity = 134/232 (57.76%), Postives = 169/232 (72.84%), Query Frame = 1
Query: 1 QILALRWAYFKDPWNRFDFFIVLGSTAGLVSLLFLGSNYGSIITVIRTFRVGRVLRLVRGLGPMAQLFQTLLMTLPSLVNVGALLFLLFFIFAAMGVQLYAKVCLCGALNAQANFRSFWDTMVLLLRFSTGENWNGFMYDVAAERDGCRSDPEYDPDVCGFTSHDNCIAIDGCGSWTIYPYMISFTFLITFVFLNLFIGVILDGFDTAKEESEDFITEEDFARFAEHWSSFD 696
+I AL+ YF D WNRFDF +V+G+ AGL+ L GSN G +T++RTFR+ R+LRL+ G ++QLF TLL+TLP L N+ ALLFLLFFI+A MGVQL+AKV G + ANFR F M+ LLRFSTGENW+GFMYDV + C +DP+YD CGF C ++GCGS+ IYPYM+SFT +ITFVFLNLFIGVIL+GF +A +ES + EDF RFA+HWS +D
Sbjct: 47 KISALKSKYFSDMWNRFDFVVVVGTNAGLIFLWISGSNIGMTVTILRTFRIARLLRLMNGAESISQLFNTLLLTLPGLGNIAALLFLLFFIYAVMGVQLFAKVEYSGDHDEHANFRDFGIAMISLLRFSTGENWDGFMYDVGRKSSTCVNDPDYDSAYCGFNDRTGCTPLNGCGSFAIYPYMLSFTVIITFVFLNLFIGVILEGFSSA-DESGKAVKPEDFIRFADHWSHYD 277
BLAST of mRNA_E-fasciculatus_F_contig15023.3562.1 vs. uniprot
Match: A0A7S2QWF6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QWF6_9STRA) HSP 1 Score: 226 bits (575), Expect = 3.050e-64 Identity = 117/245 (47.76%), Postives = 160/245 (65.31%), Query Frame = 1
Query: 10 ALRWAYFKDPWNRFDFFIVLGSTAGLVSLLFLGSNYGS--IITVIRTFRVGRVLRLVRGLGPMAQLFQTLLMTLPSLVNVGALLFLLFFIFAAMGVQLYAKVCLCGALNAQANFRSFWDTMVLLLRFSTGENWNGFMYDVA--AERDGCRSDPEYDPDVCGFTSHDNC------------IAIDGCGSWTIYPYMISFTFLITFVFLNLFIGVILDGFDTAKEESEDFITEEDFARFAEHWSSFD 696
A+ W YF D WNRFDF IV+G+ GL++ G G+ I TVIRTFR+GR+ RLV G + QLF TLL+T+P LVN+G LL LL+FIF+ M VQL+A V G + ANFR FW + LLRFSTGENWNGFM+D+A + + C +P Y+ VCG+ S D + + GCG+ + P+++ F ++ +VFLNLFIG+IL+GFDTA +E++ I EDF +F+ HW+ +D
Sbjct: 1396 AMHWLYFDDSWNRFDFLIVMGTLVGLIAKAASGGEGGAQGITTVIRTFRIGRIFRLVNGAESLNQLFNTLLLTIPGLVNIGMLLMLLYFIFSVMAVQLFATVGYNGDYSPDANFRDFWTAFMTLLRFSTGENWNGFMHDLADGPDPETCNPNPTYNSTVCGYASRDESRCNAAFEGEDWSVDVGGCGNKVVIPFLVIFQLMVGYVFLNLFIGIILEGFDTA-DETKRSIKPEDFEKFSAHWADYD 1639
BLAST of mRNA_E-fasciculatus_F_contig15023.3562.1 vs. uniprot
Match: A0A8K1CRX9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CRX9_PYTOL) HSP 1 Score: 218 bits (555), Expect = 1.470e-61 Identity = 113/232 (48.71%), Postives = 152/232 (65.52%), Query Frame = 1
Query: 1 QILALRWAYFKDPWNRFDFFIVLGSTAGLVSLLFLGSNYGSIITVIRTFRVGRVLRLVRGLGPMAQLFQTLLMTLPSLVNVGALLFLLFFIFAAMGVQLYAKVCLCGALNAQANFRSFWDTMVLLLRFSTGENWNGFMYDVAAERDGCRSDPEYDPDVCGFTSHDNCIAIDGCGSWTIYPYMISFTFLITFVFLNLFIGVILDGFDTAKEESEDFITEEDFARFAEHWSSFD 696
+I L Y+KD WNRFDF IVLGS GL+ GS+ G++ T R FRVGR+ RL++ + QLF TLL+TLPSLVN+G LLFL+FFI+AAMGVQL+AKV + NF++ MV L+R +TGE WN MY++A+ D C DP YDP +CGF + NC+A++GCGS + Y+ SFT L+TF+ LN+FI V+L+GF K+ + + + F WS FD
Sbjct: 1221 KITGLGHYYWKDAWNRFDFVIVLGSFIGLLYQWAGGSSVGALATSFRGFRVGRLFRLIQSAPSLRQLFNTLLITLPSLVNIGGLLFLVFFIYAAMGVQLFAKVKFRDLITPTTNFQTIERAMVTLIRCATGERWNDVMYELASTED-CVEDPTYDPTMCGFNNSPNCVALNGCGSPVAFIYLYSFTLLVTFILLNIFIAVVLEGFANEKDRMDGILLPHHYESFVNTWSLFD 1451
BLAST of mRNA_E-fasciculatus_F_contig15023.3562.1 vs. uniprot
Match: A0A2D4C6S1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C6S1_PYTIN) HSP 1 Score: 218 bits (555), Expect = 1.470e-61 Identity = 112/232 (48.28%), Postives = 155/232 (66.81%), Query Frame = 1
Query: 1 QILALRWAYFKDPWNRFDFFIVLGSTAGLVSLLFLGSNYGSIITVIRTFRVGRVLRLVRGLGPMAQLFQTLLMTLPSLVNVGALLFLLFFIFAAMGVQLYAKVCLCGALNAQANFRSFWDTMVLLLRFSTGENWNGFMYDVAAERDGCRSDPEYDPDVCGFTSHDNCIAIDGCGSWTIYPYMISFTFLITFVFLNLFIGVILDGFDTAKEESEDFITEEDFARFAEHWSSFD 696
++ L Y+KD WN FDF +VLGS G++ GS+ G++ T IR+FRVGR+ RLV+ + QLF TLL+TLPSLVN+G LLFL+FFI+AAMGVQL+AKV + ANF+S MV L+R +TGE WN MY++A + D C DP+YDP +CGF + C+ ++GCGS + YM SFT +++F+ LN+FI VIL+GF K+ +E + + + F WS FD
Sbjct: 1293 KVYGLGHYYWKDRWNIFDFVLVLGSFLGMLYQWVGGSSVGTVATSIRSFRVGRLFRLVQSAPSLRQLFNTLLITLPSLVNIGGLLFLVFFIYAAMGVQLFAKVKFGELITRTANFQSITRAMVTLVRCATGERWNDMMYELATQSD-CTPDPDYDPHMCGFNNTLGCVDLNGCGSPVAFIYMYSFTLIVSFILLNIFIAVILEGFSNEKDRTEGILLPQHYENFVTTWSMFD 1523
BLAST of mRNA_E-fasciculatus_F_contig15023.3562.1 vs. uniprot
Match: G4YKH5_PHYSP (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=G4YKH5_PHYSP) HSP 1 Score: 217 bits (553), Expect = 2.690e-61 Identity = 110/232 (47.41%), Postives = 155/232 (66.81%), Query Frame = 1
Query: 1 QILALRWAYFKDPWNRFDFFIVLGSTAGLVSLLFLGSNYGSIITVIRTFRVGRVLRLVRGLGPMAQLFQTLLMTLPSLVNVGALLFLLFFIFAAMGVQLYAKVCLCGALNAQANFRSFWDTMVLLLRFSTGENWNGFMYDVAAERDGCRSDPEYDPDVCGFTSHDNCIAIDGCGSWTIYPYMISFTFLITFVFLNLFIGVILDGFDTAKEESEDFITEEDFARFAEHWSSFD 696
+I+ L Y+KD WN FDF +VLG+ G++ +F GS+ G+ + +R+FRVGR+ RLV + QLF TLL+TLPSL N+G LLFL+FFI+AAMGVQL+AKV + ANF+S M+ L+R +TGE WN MY++A + D C SDP YDP+ CG +S +CI ++GCGS + Y+ SFT L+TF+ LN+FI VIL+GF K+ + + + + F +WS D
Sbjct: 1119 KIIGLGKYYWKDRWNVFDFIVVLGALFGVIYQMFGGSSVGAAASTVRSFRVGRLFRLVHSAPSLRQLFNTLLITLPSLANIGGLLFLVFFIYAAMGVQLFAKVKFGELITPTANFQSLLKAMITLVRCATGERWNDMMYELANQED-CISDPPYDPNSCGISSDADCIPLNGCGSPVAFVYLYSFTLLVTFILLNIFIAVILEGFAKEKDREDGVLLPQHYEAFVNNWSKLD 1349
BLAST of mRNA_E-fasciculatus_F_contig15023.3562.1 vs. uniprot
Match: D0MY98_PHYIT (Voltage-gated Ion Channel (VIC) Superfamily n=15 Tax=Phytophthora TaxID=4783 RepID=D0MY98_PHYIT) HSP 1 Score: 217 bits (552), Expect = 3.670e-61 Identity = 107/232 (46.12%), Postives = 157/232 (67.67%), Query Frame = 1
Query: 1 QILALRWAYFKDPWNRFDFFIVLGSTAGLVSLLFLGSNYGSIITVIRTFRVGRVLRLVRGLGPMAQLFQTLLMTLPSLVNVGALLFLLFFIFAAMGVQLYAKVCLCGALNAQANFRSFWDTMVLLLRFSTGENWNGFMYDVAAERDGCRSDPEYDPDVCGFTSHDNCIAIDGCGSWTIYPYMISFTFLITFVFLNLFIGVILDGFDTAKEESEDFITEEDFARFAEHWSSFD 696
+I+ L Y+K+PWN FDF +VLG+ G++ +F GS+ G+ + +R+FRVGR+ RLV + QLF TLL+TLPSL N+G LLFL+FFI+AAMGVQL+AK+ + + ANF+S M+ L+R +TGE WN MY++A ++D C DP YDP+ CG +S +C+ ++GCGS + Y+ SFT L+TF+ LN+FI VIL+GF K+ + + + + F + W FD
Sbjct: 1122 KIIGLGKYYWKEPWNIFDFIVVLGTLFGVIYQMFGGSSIGTAASTVRSFRVGRLFRLVHSAPSLRQLFNTLLITLPSLANIGGLLFLVFFIYAAMGVQLFAKIKFGDLITSTANFQSLLAAMITLVRCATGERWNDVMYELANQKD-CVPDPPYDPNSCGISSAVDCVPLNGCGSPVAFVYLYSFTLLVTFILLNIFIAVILEGFAKEKDRQDGVLLPQHYETFVKKWCQFD 1352 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15023.3562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig15023.3562.1 >prot_E-fasciculatus_F_contig15023.3562.1 ID=prot_E-fasciculatus_F_contig15023.3562.1|Name=mRNA_E-fasciculatus_F_contig15023.3562.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=232bp QILALRWAYFKDPWNRFDFFIVLGSTAGLVSLLFLGSNYGSIITVIRTFRback to top mRNA from alignment at E-fasciculatus_F_contig15023:347..2139+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig15023.3562.1 ID=mRNA_E-fasciculatus_F_contig15023.3562.1|Name=mRNA_E-fasciculatus_F_contig15023.3562.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1793bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15023:347..2139+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15023:347..2139+ >mRNA_E-fasciculatus_F_contig15023.3562.1 ID=mRNA_E-fasciculatus_F_contig15023.3562.1|Name=mRNA_E-fasciculatus_F_contig15023.3562.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1392bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15023:347..2139+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |