mRNA_E-fasciculatus_F_contig15015.3558.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15015.3558.1
Unique NamemRNA_E-fasciculatus_F_contig15015.3558.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig15015.3558.1 vs. uniprot
Match: A0A6H5JFK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFK1_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 2.520e-43
Identity = 74/78 (94.87%), Postives = 76/78 (97.44%), Query Frame = 2
Query:  212 DIAEALSPLVDFAKDILKDYEEDWERFPIYLKATAGVRQLSYSDREALLSAVRDFLGNPETCPFYFQFDHARVISGEE 445
            D+AEALSPLVDFAK+ILKDYEEDWERFPIYLKATAGVRQL Y DREALLSAVRDFLGNPETCPFYFQFDHARVISGEE
Sbjct:    4 DVAEALSPLVDFAKEILKDYEEDWERFPIYLKATAGVRQLPYGDREALLSAVRDFLGNPETCPFYFQFDHARVISGEE 81          
BLAST of mRNA_E-fasciculatus_F_contig15015.3558.1 vs. uniprot
Match: D7FI36_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI36_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 6.790e-43
Identity = 76/78 (97.44%), Postives = 76/78 (97.44%), Query Frame = 2
Query:  212 DIAEALSPLVDFAKDILKDYEEDWERFPIYLKATAGVRQLSYSDREALLSAVRDFLGNPETCPFYFQFDHARVISGEE 445
            DIAEALSPLVDFAKDILKDYEEDWERFPIYLKATAGVRQL Y DREALLSAVRDFLGNPETCPFYFQFDHARVISGEE
Sbjct:   90 DIAEALSPLVDFAKDILKDYEEDWERFPIYLKATAGVRQLPYGDREALLSAVRDFLGNPETCPFYFQFDHARVISGEE 167          
BLAST of mRNA_E-fasciculatus_F_contig15015.3558.1 vs. uniprot
Match: A0A6H5JI00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI00_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 5.120e-28
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = 1
Query:    1 IIDAGSSGSRMHVYQWEPRIFTTLPPPISIPGSTNQWTQRMRPGISSYSNHLEAGG 168
            IIDAGSSGSRMHVYQWEPR+F TLPPPISIPGSTNQWT RM PGISSYS HL+A G
Sbjct:   44 IIDAGSSGSRMHVYQWEPRMFATLPPPISIPGSTNQWTHRMEPGISSYSTHLQAWG 99          
BLAST of mRNA_E-fasciculatus_F_contig15015.3558.1 vs. uniprot
Match: A0A835YPX1_9STRA (Nucleoside phosphatase GDA1/CD39 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPX1_9STRA)

HSP 1 Score: 107 bits (268), Expect = 6.580e-26
Identity = 47/78 (60.26%), Postives = 65/78 (83.33%), Query Frame = 2
Query:  212 DIAEALSPLVDFAKDILKDYEEDWERFPIYLKATAGVRQLSYSDREALLSAVRDFLGNPETCPFYFQFDHARVISGEE 445
            D+ ++L PLVDFAK ILKD+EEDW ++PIYL+ATAG+RQL  + R A+L A+RD+LG PE CPF+F++ + RV++GEE
Sbjct:   98 DVGQSLKPLVDFAKTILKDHEEDWHKYPIYLRATAGMRQLEPTKRVAVLDAIRDYLGGPE-CPFHFEYHYVRVLAGEE 174          
BLAST of mRNA_E-fasciculatus_F_contig15015.3558.1 vs. uniprot
Match: A0A835ZFV4_9STRA (Nucleoside phosphatase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFV4_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 5.850e-20
Identity = 44/78 (56.41%), Postives = 62/78 (79.49%), Query Frame = 2
Query:  212 DIAEALSPLVDFAKDILKDYEEDWERFPIYLKATAGVRQLSYSDREALLSAVRDFLGNPETCPFYFQFDHARVISGEE 445
            DI E L PL+DFA DIL D + D+ +FPI+LKAT G+RQL ++ R+A+++A+R +L   + CPFYF+F++ARVISGEE
Sbjct:   55 DIGEHLGPLIDFAIDILADKKGDFWKFPIFLKATGGMRQLPFAQRDAIMTAIRQYLYGDD-CPFYFEFEYARVISGEE 131          
BLAST of mRNA_E-fasciculatus_F_contig15015.3558.1 vs. uniprot
Match: A0A7S1TZX0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZX0_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.710e-19
Identity = 46/89 (51.69%), Postives = 63/89 (70.79%), Query Frame = 2
Query:  179 LFLLSSEPESLDIAEALSPLVDFAKDILKDYEEDWERFPIYLKATAGVRQLSYSDREALLSAVRDFLGNPETCPFYFQFDHARVISGEE 445
            L  L  +P++  + EAL PLV+FAK++LKD  + W  +PIYLKAT G+R+L  + RE ++  VR +L +  TCPFYF+ D ARVISGEE
Sbjct:   96 LSTLGLDPDA--VGEALFPLVEFAKNVLKDKADRWHNYPIYLKATGGMRELPNNLREQVMGWVRAYLEDNSTCPFYFRRDFARVISGEE 182          
BLAST of mRNA_E-fasciculatus_F_contig15015.3558.1 vs. uniprot
Match: A0A7S1XQJ9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XQJ9_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 4.000e-19
Identity = 46/89 (51.69%), Postives = 63/89 (70.79%), Query Frame = 2
Query:  179 LFLLSSEPESLDIAEALSPLVDFAKDILKDYEEDWERFPIYLKATAGVRQLSYSDREALLSAVRDFLGNPETCPFYFQFDHARVISGEE 445
            L  L  +P++  + EAL PLV+FAK++LKD  + W  +PIYLKAT G+R+L  + RE ++  VR +L +  TCPFYF+ D ARVISGEE
Sbjct:   96 LSTLGLDPDA--VGEALFPLVEFAKNVLKDKADRWHNYPIYLKATGGMRELPNNLREQVMGWVRAYLEDNSTCPFYFRRDFARVISGEE 182          
BLAST of mRNA_E-fasciculatus_F_contig15015.3558.1 vs. uniprot
Match: A0A835YH63_9STRA (Nucleoside phosphatase family-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH63_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.020e-18
Identity = 41/78 (52.56%), Postives = 61/78 (78.21%), Query Frame = 2
Query:  212 DIAEALSPLVDFAKDILKDYEEDWERFPIYLKATAGVRQLSYSDREALLSAVRDFLGNPETCPFYFQFDHARVISGEE 445
            DI E L PL++FAK+ILKD+E+++ +FP+YL+AT G+RQL  + R  ++  +R FL + E+ PFYF++D ARV+SGEE
Sbjct:   58 DIGEHLRPLIEFAKNILKDHEDNFYKFPLYLRATGGMRQLPVAQRARIMDHIRWFLYSEES-PFYFEYDFARVVSGEE 134          
BLAST of mRNA_E-fasciculatus_F_contig15015.3558.1 vs. uniprot
Match: W7TQ28_9STRA (Ectonucleoside triphosphate diphosphohydrolase 4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQ28_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.220e-17
Identity = 40/77 (51.95%), Postives = 55/77 (71.43%), Query Frame = 2
Query:  215 IAEALSPLVDFAKDILKDYEEDWERFPIYLKATAGVRQLSYSDREALLSAVRDFLGNPETCPFYFQFDHARVISGEE 445
            +  +L  L+ FA+++L   E  ++ FPIYLKAT G+RQLS S REA++  VR ++ N  TCPFYF+ D ARV+SGEE
Sbjct:  180 VGTSLDSLISFAREVLAGKEHQFKYFPIYLKATGGMRQLSPSKREAIIDEVRKYMMNKTTCPFYFEHDFARVVSGEE 256          
BLAST of mRNA_E-fasciculatus_F_contig15015.3558.1 vs. uniprot
Match: A0A1E7F677_9STRA (GDA1_CD39-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F677_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 7.830e-17
Identity = 43/91 (47.25%), Postives = 58/91 (63.74%), Query Frame = 2
Query:  179 LFLLSSEPESLD--IAEALSPLVDFAKDILKDYEEDWERFPIYLKATAGVRQLSYSDREALLSAVRDFLGNPETCPFYFQFDHARVISGEE 445
            +F     PE L+  + E L  L+DFAK++LKD E++W  +PIYLKAT G+R L+  +R  L+  VRD   N    PF F+ + ARVISGEE
Sbjct:  161 VFGYHKNPEKLEKAVGEYLGALLDFAKEVLKDKEDEWHTYPIYLKATGGLRTLAQPERVRLMDCVRDLFNNKTYNPFAFEDERARVISGEE 251          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15015.3558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFK1_9PHAE2.520e-4394.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI36_ECTSI6.790e-4397.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JI00_9PHAE5.120e-2887.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YPX1_9STRA6.580e-2660.26Nucleoside phosphatase GDA1/CD39 (Fragment) n=1 Ta... [more]
A0A835ZFV4_9STRA5.850e-2056.41Nucleoside phosphatase family-domain-containing pr... [more]
A0A7S1TZX0_9STRA2.710e-1951.69Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S1XQJ9_9STRA4.000e-1951.69Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A835YH63_9STRA2.020e-1852.56Nucleoside phosphatase family-domain-containing pr... [more]
W7TQ28_9STRA1.220e-1751.95Ectonucleoside triphosphate diphosphohydrolase 4 n... [more]
A0A1E7F677_9STRA7.830e-1747.25GDA1_CD39-domain-containing protein n=1 Tax=Fragil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15015contigE-fasciculatus_F_contig15015:193..1069 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.4
Seed ortholog evalue1.9e-15
Seed eggNOG ortholog2880.D7FI36
EggNOG free text desc.nucleoside-diphosphatase activity
EggNOG OGsCOG5371@1,KOG1386@2759
COG Functional cat.GO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size445
Cds size141
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15015.3558.1prot_E-fasciculatus_F_contig15015.3558.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15015 899..1039 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927982.6137474-UTR-E-fasciculatus_F_contig15015:192..4261622927982.6137474-UTR-E-fasciculatus_F_contig15015:192..426Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15015 193..426 -
1695995777.5209177-UTR-E-fasciculatus_F_contig15015:192..4261695995777.5209177-UTR-E-fasciculatus_F_contig15015:192..426Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15015 193..426 -
1622927982.6510417-UTR-E-fasciculatus_F_contig15015:858..8981622927982.6510417-UTR-E-fasciculatus_F_contig15015:858..898Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15015 859..898 -
1695995777.5331304-UTR-E-fasciculatus_F_contig15015:858..8981695995777.5331304-UTR-E-fasciculatus_F_contig15015:858..898Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15015 859..898 -
1622927982.685933-UTR-E-fasciculatus_F_contig15015:1039..10691622927982.685933-UTR-E-fasciculatus_F_contig15015:1039..1069Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15015 1040..1069 -
1695995777.5530074-UTR-E-fasciculatus_F_contig15015:1039..10691695995777.5530074-UTR-E-fasciculatus_F_contig15015:1039..1069Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15015 1040..1069 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927982.6672735-CDS-E-fasciculatus_F_contig15015:898..10391622927982.6672735-CDS-E-fasciculatus_F_contig15015:898..1039Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15015 899..1039 -
1695995777.544436-CDS-E-fasciculatus_F_contig15015:898..10391695995777.544436-CDS-E-fasciculatus_F_contig15015:898..1039Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15015 899..1039 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15015.3558.1

>prot_E-fasciculatus_F_contig15015.3558.1 ID=prot_E-fasciculatus_F_contig15015.3558.1|Name=mRNA_E-fasciculatus_F_contig15015.3558.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=47bp
MHVYQWEPRIFTTLPPPISIPGSTNQWTQRMRPGISSYSNHLEAGG*
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mRNA from alignment at E-fasciculatus_F_contig15015:193..1069-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15015.3558.1 ID=mRNA_E-fasciculatus_F_contig15015.3558.1|Name=mRNA_E-fasciculatus_F_contig15015.3558.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=877bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15015:193..1069- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATCATCGACGCCGGCAGTAGCGGAAGCCGCATGCACGTGTACCAGTGGGA GCCGCGCATCTTCACGACGCTGCCGCCGCCGATCTCTATCCCCGGCTCAA CCAACCAGTGGACGCAGAGGATGAGGCCAGGAATCTCCTCCTACAGCAAT CACCTCGAGGCAGGGGGATGATTTTTTTCTTTTTCTATTGAGCAGCGAAC CCGAGTCACTAGTACACCCGGGTACGGGGCAGCGGTTGCAACGGGGGGAT TATGAGCGTGTGGGACGTCGCTGGTTCCGTTCACTGCGCCCTTGACTTAT TTGTCGTTTGCAGTTTCCGTACGTCGTGTACAGGGCAAGGGCTAGGAGTT GCCATGAACTGTTTTCCCCCTGTCCATGGCTCGACCAGTCTTGTGAACAC CGGTGTATCATATTTTTGTACGTCAGGCTCCCCTGCCTCCCCTACACCAT ATTCAGCGCGTGTTTTATCTCGACGCGCCTACGAGAGGCCCGTCGGCGTC ACACACGAAAGAGCAAGGGTTCCAAAACAATTTCCTTCCGCACGTTTTTC TGCGACGACGATGACGTTTTTCTTTTCTTCTCCTCGCTCCGTTCGGTCTC GATATCCCCCTCCCCCCCCGTGCGGGCCTCCCCAAAACGAAAGGACATCG CGGAAGCCCTGTCCCCCCTCGTGGACTTCGCGAAGGATATCCTGAAGGAC TACGAGGAGGACTGGGAGCGGTTCCCCATCTACCTCAAGGCCACCGCGGG GGTGAGGCAGCTGTCTTACAGCGACCGCGAGGCGCTCTTATCGGCCGTTC GAGACTTCCTGGGCAACCCCGAGACCTGCCCGTTCTACTTCCAGTTCGAC CATGCCAGGGTCATCTCCGGGGAGGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15015:193..1069-

>mRNA_E-fasciculatus_F_contig15015.3558.1 ID=mRNA_E-fasciculatus_F_contig15015.3558.1|Name=mRNA_E-fasciculatus_F_contig15015.3558.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=282bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15015:193..1069- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCACGTGTACCAGTGGGAGCCGCGCATCTTCACGACGCTGCCGCCGCC
GATCTCTATCCCCGGCTCAACCAACCAGTGGACGCAGAGGATGAGGCCAG
GAATCTCCTCCTACAGCAATCACCTCGAGGCAGGGGGATGAATGCACGTG
TACCAGTGGGAGCCGCGCATCTTCACGACGCTGCCGCCGCCGATCTCTAT
CCCCGGCTCAACCAACCAGTGGACGCAGAGGATGAGGCCAGGAATCTCCT
CCTACAGCAATCACCTCGAGGCAGGGGGATGA
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