mRNA_E-fasciculatus_F_contig1499.3536.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1499.3536.1
Unique NamemRNA_E-fasciculatus_F_contig1499.3536.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1499.3536.1 vs. uniprot
Match: D7FNG9_ECTSI (Fe2OG dioxygenase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNG9_ECTSI)

HSP 1 Score: 502 bits (1293), Expect = 2.870e-174
Identity = 272/311 (87.46%), Postives = 277/311 (89.07%), Query Frame = 1
Query:   43 MTSLDFQSLLKQEKALQRAQLAQSTRTXXXXXXXXXXXESGPARSRLSTTCRRRVEERKAVGTKEPSQLFVKLAGRPSLDMEKMRVGNTPSIFYVPDFISGADEQQLLERIHAEASGNEWVTLRSRRLKCWGGQPGESFRPEPLPPWVDALCESLVVRGVFSEKTRPNHVLLNEYQPGQGIMAHTDGPFYEPRTATLSLGSDAVMHFSPRVETSRIGRPGVETRPQASLVLRALSLVVFADDAYSRLLHSIDAVREETVGCSGSAGDGVDERGDGG--GGAPVINGAAAGAPEGTILRRKLRVSLTFRRVR 969
            MTSLDFQSLLKQEKALQR QLAQSTRT    XXXXXXX                  E K VGTKEPS L VKLAGRPSLDMEKMRVGNTPSIFYVPDFISGADEQQLLERIHA+AS NEWVTLRSRRLKCWGGQPGESFRPEPLPPWVDALCESLVVRGVFSE+TRPNHVLLNEYQPGQGIMAHTDGPFYEPRTATLSLGSDAVMHFSPR+ETSRIGRPGVETRPQASLVLRALSLVVFADDAYSRLLHSIDAVREETVGC GS+GD V +RG GG  GGAPVINGAAAGAPEGTILRRKLRVSLTFRRVR
Sbjct:    1 MTSLDFQSLLKQEKALQRVQLAQSTRTTAVQXXXXXXXXXXXXXXXXXXXX---XXESKVVGTKEPSPLLVKLAGRPSLDMEKMRVGNTPSIFYVPDFISGADEQQLLERIHAQASSNEWVTLRSRRLKCWGGQPGESFRPEPLPPWVDALCESLVVRGVFSEETRPNHVLLNEYQPGQGIMAHTDGPFYEPRTATLSLGSDAVMHFSPRIETSRIGRPGVETRPQASLVLRALSLVVFADDAYSRLLHSIDAVREETVGCGGSSGD-VGKRGGGGVGGGAPVINGAAAGAPEGTILRRKLRVSLTFRRVR 307          
BLAST of mRNA_E-fasciculatus_F_contig1499.3536.1 vs. uniprot
Match: A0A835ZDT2_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDT2_9STRA)

HSP 1 Score: 201 bits (510), Expect = 1.260e-57
Identity = 112/239 (46.86%), Postives = 145/239 (60.67%), Query Frame = 1
Query:  271 PSLDMEKMRVGNTPSIFYVPDFISGADEQQLLERIHAEASGN-EWVTLRSRRLKCWGGQ---PGESFRPEPLPPWVDALCESLVVRGVFSEKTRPNHVLLNEYQPGQGIMAHTDGPFYEPRTATLSLGSDAVMHFSPRVET-SRIGRPGVETRPQASLVLRALSLVVFADDAYSRLLHSIDAVREETVGCSGSAGDGVDERGDGGGGA-PVINGAAAG-APEGTILRRKLRVSLTFRRV 966
            P++D++  R G  PS++Y PDF++ +   +++++++A   G+  W  LR+RRL+CWGGQ    G +  P  L PW+  LC  LV  G+F     PNHVL+NEYQPGQGIM HTDGP Y PRTATLSL SDAV   + R  +   IG   V+  P  +L+LR  SLVVFAD AY+   H ID V EE VG             DG GG   V+NG  AG A E  ++ R LR+SLTFR V
Sbjct:    6 PTVDLQSHRTGTIPSVYYNPDFVTASLADEIIKQVYAVPEGHARWTVLRTRRLQCWGGQLQADGRAHDPSDLCPWLQQLCTLLVTCGIFPAHAPPNHVLINEYQPGQGIMPHTDGPMYYPRTATLSLMSDAVFKLAQRPRSPGDIG--SVDLSPTEALLLRNRSLVVFADAAYTDFTHGIDFVHEEAVG-------------DGSGGTCSVVNGPEAGVAEEEVVVERALRISLTFRHV 229          
BLAST of mRNA_E-fasciculatus_F_contig1499.3536.1 vs. uniprot
Match: A0A4D9DGD1_9STRA (Fe2OG dioxygenase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DGD1_9STRA)

HSP 1 Score: 188 bits (477), Expect = 1.950e-51
Identity = 109/243 (44.86%), Postives = 143/243 (58.85%), Query Frame = 1
Query:  280 DMEKMRVGNTPS-IFYVPDFISGADEQQLLERIHAEASGNEWVTLRSRRLKCWGGQPGE---SFRPEPLPPWVDALCESLVVRGVFSEKTRPNHVLLNEYQPGQGIMAHTDGPFYEPRTATLSLGSDAVMHFSPRVETSRIGRPGVETRPQASLVLRALSLVVFADDAYSRLLHSIDAVREETVGCSGSAGDGVDERGDGGGGAPVINGAAAGAPEGTI-----LRRKLRVSLTFRRVRVERE 981
            D+ K  +   P  +FYVP++IS   EQ+++E  H+    N+WV LR RRL+C+GG+P E   SF+ E LPPW+  +C +L++ GVF E+  PNHVLLNEY+PGQGIMAH DGPFY  R A +SLG  A+  F  R+    I     E+ P  ++VL   SL+VF  +AY   LH I AV EE VG  G+ G             PV+N       EG I     L+R LR+SLT RRV+ E E
Sbjct:  121 DLSKHAMRGPPDGVFYVPEYISKEMEQEIMEVAHSMPV-NQWVKLRGRRLQCFGGKPTENVRSFQSEALPPWIGQVCRTLMLAGVFDEEIIPNHVLLNEYEPGQGIMAHADGPFYHSRVAIISLGGPAIFRFKRRLIAEEISADSQESGPAGTVVLEPRSLIVFEGEAYHDYLHEIAAVEEEVVG--GTEGT-----------TPVLN---LERLEGRINVGDRLKRALRLSLTCRRVKEEGE 346          
BLAST of mRNA_E-fasciculatus_F_contig1499.3536.1 vs. uniprot
Match: A0A7S2G6U9_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G6U9_9STRA)

HSP 1 Score: 190 bits (483), Expect = 1.060e-50
Identity = 106/246 (43.09%), Postives = 147/246 (59.76%), Query Frame = 1
Query:  250 FVKLAGRPSLDMEKMRVGNT-PSIFYVPDFISGADEQQLLERIHAEASGN-EWVTLRSRRLKCWGGQPGESFRPEPLPPWVDALCESLVVRGVFSEKTRPNHVLLNEYQPGQGIMAHTDGPFYEPRTATLSLGSDAVMHFSPRVETSRIGRPGVETRPQASLVLRALSLVVFADDAYSRLLHSIDAVREETVGCSGSAGDGVDERGDGGGGAPVINGAAAGAPEGTILRRK-LRVSLTFRRVRVER 978
            F +   RP + +    V +   ++ Y+P++++  +E  ++ + +A    +  WVTLR RRL+CWGG+P      EPLPPW+  L E LV  G+F  +  PNHVLLNEY+ G+GIMAHTDG FY P+TATLSLG  AVM F+PRV+   +G   V+ RP A +VLR  SLVVF ++AY   LH+I A   + VG +                APV N  +AGA  G ++ R  +R+SLTFR +  ER
Sbjct:   79 FDRWTSRPRVKLTDYDVDSKLKTVSYLPEWVAEDEEAAIMAQTYAVPDSHPSWVTLRGRRLQCWGGEPRRDSAAEPLPPWLQRLSEGLVEAGIFPAEVAPNHVLLNEYKAGEGIMAHTDGDFYHPQTATLSLGGTAVMTFAPRVQPRAVGL--VDGRPVAEVVLRPRSLVVFREEAYLDHLHAIAASHSDEVGAA----------------APVANLESAGARLGEVIARPAVRLSLTFRHIVRER 306          
BLAST of mRNA_E-fasciculatus_F_contig1499.3536.1 vs. uniprot
Match: A0A7S2G3H8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G3H8_9STRA)

HSP 1 Score: 167 bits (424), Expect = 1.060e-45
Identity = 89/192 (46.35%), Postives = 118/192 (61.46%), Query Frame = 1
Query:  400 WVTLRSRRLKCWGGQPGE--SFRPEPLPPWVDALCESLVVRGVFSEKTRPNHVLLNEYQPGQGIMAHTDGPFYEPRTATLSLGSDAVMHFSPRVETSRIGRPGVETRPQASLVLRALSLVVFADDAYSRLLHSIDAVREETVGCSGSAGDGVDERGDGGGGAPVINGAAAGAPEGTILRRK-LRVSLTFRRV 966
            W++L  RR++CWGGQP E   F PEPLPPW+  +C +LV  GVF  + RPNHVL+NEY  G+GI+ H+DGP Y P+TATLSLG  A+M F PR+ +  IG   V + P   ++LR  SLVVF D AY   +H+I + + + VG                  A  IN A +GA  G +++R  +RVSLTFR V
Sbjct:   16 WISLSGRRVQCWGGQPNERTKFVPEPLPPWLVDICTALVDAGVFPSEVRPNHVLINEYANGEGILPHSDGPMYFPKTATLSLGGSAIMTFEPRISSGDIGE--VSSDPICEVILRPRSLVVFEDAAYIDYMHAIASRQTDQVGSR----------------AVPINLALSGARHGEMVQRPAIRVSLTFRHV 189          
BLAST of mRNA_E-fasciculatus_F_contig1499.3536.1 vs. uniprot
Match: A0A7S0PB53_CAFRO (Hypothetical protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PB53_CAFRO)

HSP 1 Score: 160 bits (404), Expect = 2.710e-41
Identity = 105/241 (43.57%), Postives = 131/241 (54.36%), Query Frame = 1
Query:  274 SLDMEKMRVGNTPSIFYVPDFISGADEQQLLERIHA---EASGNEWVTLRSRRLKCWGGQPGESFR---PEPLPPWVDALCESLVVRGVFSEKTRPNHVLLNEYQPGQGIMAHTDGPFYEPRTATLSLGSDAVMHFSPRVETSRIGRPG---VETRPQASLVLRALSLVVFADDAYSRLLHSIDAVREETVGCSGSAGDGVDERGDGGGGAPVINGAAAGAPEGTIL-RRKLRVSLTFRRV 966
            S  M+K+ V N        +F+S A E  LL  + +   EASG  WV LR RRL  +GG P    R    EPLPPW+ A+ + LV  G F E  RPNHVL+N Y PG+GI+ HTDGP Y P TATLSLGSDAVM F+PRV +  +G      +E        L   SLVVF+D+AY+  LH + AV E  V                   A  +N A+ G  EG+++ R  LRVSLT R V
Sbjct:   92 SAPMQKVVVHN--------EFLSAACEADLLRCVLSPVYEASGR-WVRLRGRRLLQFGGTPMPGPRLLGREPLPPWLGAVVDRLVATGAFPEDKRPNHVLVNAYGPGEGILPHTDGPLYFPCTATLSLGSDAVMRFAPRVPSELVGTSSQSHLEAAKSFDAGLARRSLVVFSDEAYTSALHDVAAVGEHRVT------------------AKCLNAASLGWAEGSLIPRAPLRVSLTMRHV 305          
BLAST of mRNA_E-fasciculatus_F_contig1499.3536.1 vs. uniprot
Match: UPI001C9126C5 (alpha-ketoglutarate-dependent dioxygenase alkB homolog 6-like isoform X1 n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C9126C5)

HSP 1 Score: 157 bits (396), Expect = 2.850e-41
Identity = 98/231 (42.42%), Postives = 130/231 (56.28%), Query Frame = 1
Query:  283 MEKMRVGNTPS-IFYVPDFISGADEQQLLERIHAEASGNEWVTLRSRRLKCWGGQPG-ESFRPEPLPPWVDALCESLVVRGVFSEKTRPNHVLLNEYQPGQGIMAHTDGPFYEPRTATLSLGSDAVMH-FSPRVETSRIGRPGVETRPQASLVLRALSLVVFADDAYSRLLHSIDAVREETVGCSGSAGDGVDERGDGGGGAPVINGAAAGAPEGTILRRKLRVSLTFRRV 966
            +EK +V   P+ + YVP+F++ A+EQ+LLE ++A A    W  L  RRL+ WGG P      PE +P W+ A  E +   G F E  RPNHVL+NEY PGQGIM HTDGP + P   T++LGS A++  + PR + S+   P  E     SL+L   SL+V  DDAY  LLH I A  E+TV  +                  V+NGA   A  G+ L+R+ RVSLT R V
Sbjct:    4 LEKYKVTRAPATVHYVPEFVTEAEEQRLLELVYA-APRPRWTQLAHRRLQNWGGLPHPRGMLPEQIPTWLQAPMERIAALGCFGE-LRPNHVLVNEYLPGQGIMPHTDGPLFAPVITTVTLGSHALLDLYRPRQDDSQEASPA-EPEAVGSLLLARRSLLVVRDDAYHHLLHGIAARTEDTVTDA------------------VLNGAEQAA--GSRLQRQTRVSLTIRHV 211          
BLAST of mRNA_E-fasciculatus_F_contig1499.3536.1 vs. uniprot
Match: A0A2R5GWX9_9STRA (Alpha-ketoglutarate-dependent dioxygenase alkB-like 6 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GWX9_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.200e-40
Identity = 90/215 (41.86%), Postives = 120/215 (55.81%), Query Frame = 1
Query:  316 IFYVPDFISGADEQQLLERIHAEASGNEWVTLRSRRLKCWGGQPGESFRPEPLPPWVDALCESLVVRGVFSEKTRPNHVLLNEYQPGQGIMAHTDGPFYEPRTATLSLGSDAVMHFSPRVETSRIGRPGVETRPQASLVLRALSLVVFADDAYSRLLHSIDAVREETVGCSGSAGDGVDERGDGGGGAPVINGAAAGAPEGTILRRKLRVSLTFR 960
            ++Y+P+F +  +   +LE+ +++A+   W  +RSRRL+C        +R   +PPW+D L  SLV  G+FS   RPNH LLNEY+PGQGI+ HTDGP Y    A +SLGS A   F+ R+ T  IG    E R  A+L+L+  SLVVFA DAY   LHS+ A+ EE V                   A V N  AA A  G  + R  RVS+T R
Sbjct:   92 VWYIPNFCTVEEHDDMLEQTYSKAAS--WKDIRSRRLQC--------YREPEMPPWLDTLASSLVQAGIFSPAQRPNHALLNEYEPGQGILGHTDGPVYHSLVACISLGSPATFRFTERLLTDEIGVR--EARELATLLLQPRSLVVFAADAYREALHSVPALLEEVVS------------------ADVANIEAAQASVGDRIPRTTRVSITMR 276          
BLAST of mRNA_E-fasciculatus_F_contig1499.3536.1 vs. uniprot
Match: UPI00165B441C (alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 n=1 Tax=Fundulus heteroclitus TaxID=8078 RepID=UPI00165B441C)

HSP 1 Score: 154 bits (388), Expect = 5.910e-40
Identity = 97/236 (41.10%), Postives = 128/236 (54.24%), Query Frame = 1
Query:  280 DMEKMRVGNTP-SIFYVPDFISGADEQQLLERIHAEASGNEWVTLRSRRLKCWGGQPG-ESFRPEPLPPWVDALCESLVVRGVFSEKTRPNHVLLNEYQPGQGIMAHTDGPFYEPRTATLSLGSDAVMHF-----SPRVETSRIGRPGVETRPQASLVLRALSLVVFADDAYSRLLHSIDAVREETVGCSGSAGDGVDERGDGGGGAPVINGAAAGAPEGTILRRKLRVSLTFRRV 966
            D+++  V   P +++YVPDFIS  +E  LL++++  A   +W  L  RRL+ WGG P       E LP W+   CE +   G F  KT  NHVL+NEY+ G+GIM H DGP Y P   T+SLGS A++ F      P  E ++     VE+R Q SL++R  SL+V  DDAY RLLH I   +++T+           ER        V N  AAGA  G  L R  RVSLT R V
Sbjct:   10 DLQRFVVSEAPQTVYYVPDFISPEEESYLLQQVY-RAPRTKWTQLSGRRLQNWGGVPHPRGMLGEELPAWLQNYCEKISSLGAFGGKTA-NHVLVNEYKRGEGIMPHQDGPLYHPTVTTVSLGSHALLDFYRPVGGPDGEAAQ----SVESRYQFSLLVRPRSLLVLQDDAYRRLLHGIQERQQDTL----------TER--------VANLGAAGARPGDTLSRTTRVSLTIRHV 221          
BLAST of mRNA_E-fasciculatus_F_contig1499.3536.1 vs. uniprot
Match: A0A1S3LNM3_SALSA (alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 isoform X1 n=20 Tax=Salmonidae TaxID=8015 RepID=A0A1S3LNM3_SALSA)

HSP 1 Score: 150 bits (378), Expect = 1.670e-38
Identity = 90/233 (38.63%), Postives = 125/233 (53.65%), Query Frame = 1
Query:  280 DMEKMRVGNTP-SIFYVPDFISGADEQQLLERIHAEASGNEWVTLRSRRLKCWGGQPG-ESFRPEPLPPWVDALCESLVVRGVFSEKTRPNHVLLNEYQPGQGIMAHTDGPFYEPRTATLSLGSDAVMHFSPRVETSRIGR--PGVETRPQASLVLRALSLVVFADDAYSRLLHSIDAVREETVGCSGSAGDGVDERGDGGGGAPVINGAAAGAPEGTILRRKLRVSLTFRRV 966
            D+E+  V + P +++Y+PDFI+  +E QLL++++ +A   +W  L +RRL+ WGG P  +    E LP W+   CE +   G F+ KT  NHVL+NEY+PG+GIM H DGP Y P   T+SLGS  ++ F   +    +       E+R   SL++R  SL++  DD Y RLLH I               D + ER        V N  AAG   G  L R  RVSLT R V
Sbjct:   10 DLERYVVKDAPPTVYYIPDFITEDEESQLLQQVY-KAPKTKWTQLSNRRLQNWGGLPRPKGMLGEKLPDWLLKYCERISALGAFAGKTA-NHVLVNEYKPGEGIMPHEDGPLYHPTVTTISLGSHTLLDFYRPISAQELDEVPQTEESRYLLSLLVRPRSLLILQDDMYQRLLHGIQGTHH----------DSLTER--------VANLLAAGVQPGATLTRGTRVSLTVRHV 222          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1499.3536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNG9_ECTSI2.870e-17487.46Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A835ZDT2_9STRA1.260e-5746.86Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A4D9DGD1_9STRA1.950e-5144.86Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
A0A7S2G6U9_9STRA1.060e-5043.09Hypothetical protein n=2 Tax=Florenciella parvula ... [more]
A0A7S2G3H8_9STRA1.060e-4546.35Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S0PB53_CAFRO2.710e-4143.57Hypothetical protein n=1 Tax=Cafeteria roenbergens... [more]
UPI001C9126C52.850e-4142.42alpha-ketoglutarate-dependent dioxygenase alkB hom... [more]
A0A2R5GWX9_9STRA1.200e-4041.86Alpha-ketoglutarate-dependent dioxygenase alkB-lik... [more]
UPI00165B441C5.910e-4041.10alpha-ketoglutarate-dependent dioxygenase alkB hom... [more]
A0A1S3LNM3_SALSA1.670e-3838.63alpha-ketoglutarate-dependent dioxygenase alkB hom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1499contigE-fasciculatus_F_contig1499:14233..17147 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score499.6
Seed ortholog evalue1.1e-138
Seed eggNOG ortholog2880.D7FNG9
KEGG koko:K10768
EggNOG free text desc.ferrous iron binding
EggNOG OGsKOG3200@1,KOG3200@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAlpha-ketoglutarate-dependent dioxygenase AlkB-like
Ec32 orthologEc-01_005500.1
Exons3
Model size1529
Cds size945
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1499.3536.1prot_E-fasciculatus_F_contig1499.3536.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1499 14275..16605 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927977.4629734-UTR-E-fasciculatus_F_contig1499:14232..142741622927977.4629734-UTR-E-fasciculatus_F_contig1499:14232..14274Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1499 14233..14274 +
1695995775.4888957-UTR-E-fasciculatus_F_contig1499:14232..142741695995775.4888957-UTR-E-fasciculatus_F_contig1499:14232..14274Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1499 14233..14274 +
1622927977.5369806-UTR-E-fasciculatus_F_contig1499:16605..171471622927977.5369806-UTR-E-fasciculatus_F_contig1499:16605..17147Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1499 16606..17147 +
1695995775.5619223-UTR-E-fasciculatus_F_contig1499:16605..171471695995775.5619223-UTR-E-fasciculatus_F_contig1499:16605..17147Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1499 16606..17147 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927977.4932902-CDS-E-fasciculatus_F_contig1499:14274..145231622927977.4932902-CDS-E-fasciculatus_F_contig1499:14274..14523Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1499 14275..14523 +
1695995775.5010781-CDS-E-fasciculatus_F_contig1499:14274..145231695995775.5010781-CDS-E-fasciculatus_F_contig1499:14274..14523Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1499 14275..14523 +
1622927977.5112064-CDS-E-fasciculatus_F_contig1499:15490..157611622927977.5112064-CDS-E-fasciculatus_F_contig1499:15490..15761Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1499 15491..15761 +
1695995775.5184977-CDS-E-fasciculatus_F_contig1499:15490..157611695995775.5184977-CDS-E-fasciculatus_F_contig1499:15490..15761Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1499 15491..15761 +
1622927977.5256314-CDS-E-fasciculatus_F_contig1499:16180..166051622927977.5256314-CDS-E-fasciculatus_F_contig1499:16180..16605Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1499 16181..16605 +
1695995775.5504792-CDS-E-fasciculatus_F_contig1499:16180..166051695995775.5504792-CDS-E-fasciculatus_F_contig1499:16180..16605Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1499 16181..16605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1499.3536.1

>prot_E-fasciculatus_F_contig1499.3536.1 ID=prot_E-fasciculatus_F_contig1499.3536.1|Name=mRNA_E-fasciculatus_F_contig1499.3536.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=315bp
MTSLDFQSLLKQEKALQRAQLAQSTRTTTTAVVVQQEDESGPARSRLSTT
CRRRVEERKAVGTKEPSQLFVKLAGRPSLDMEKMRVGNTPSIFYVPDFIS
GADEQQLLERIHAEASGNEWVTLRSRRLKCWGGQPGESFRPEPLPPWVDA
LCESLVVRGVFSEKTRPNHVLLNEYQPGQGIMAHTDGPFYEPRTATLSLG
SDAVMHFSPRVETSRIGRPGVETRPQASLVLRALSLVVFADDAYSRLLHS
IDAVREETVGCSGSAGDGVDERGDGGGGAPVINGAAAGAPEGTILRRKLR
VSLTFRRVRVERER*
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mRNA from alignment at E-fasciculatus_F_contig1499:14233..17147+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1499.3536.1 ID=mRNA_E-fasciculatus_F_contig1499.3536.1|Name=mRNA_E-fasciculatus_F_contig1499.3536.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2915bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1499:14233..17147+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACAGCAACTCGTATGCAATATACATAGATAGACGGGGTCACCATGACAAG CCTCGATTTCCAGAGCCTTCTCAAGCAGGAGAAGGCGCTCCAACGAGCCC AGCTCGCCCAAAGTACCCGAACAACAACGACAGCAGTAGTGGTGCAACAA GAGGACGAATCGGGCCCCGCACGGAGTAGGCTGAGCACTACATGTAGGCG GCGAGTTGAAGAGAGAAAGGCGGTGGGCACAAAGGAGCCGTCGCAGCTCT TCGTGAAGCTTGCAGGGCGGCCGTCACTCGACATGGAAAAGGTGCTAGTG GTTGTGTTATGAGCTCCACGCTTGCGATCCAACAGGAGTTGGTACCTACA GAGAGCGCACCAGGGTTCCCTAGGTGACGGAAGGTACCACACCCCCGGGA CCGACTTTCAAAGCTCGATTACTCCACAGCAGAAAGAATGGTAGGGTTGA AACATGGTTGGGTTGGAACCGTCTTGTCCAGAGCGCTTCCCGACAACGTA CTATCGTTTCATTTATGGATCGTCTTCATGGTGGAGTAACCGCGCGAGCT TTGAAATTCGGTCCAGGGGGTGTGGTATCTTGTGTCATATTCGGTATGGA GGTGTTTTGACCTGCTGGCATCACTCATTCTCAGCGAAAGATAATTACGG CTGTACGTGCATCACCAGCAAGTGCTCCTCAATCTCAATCTGCACTGGAA AGATCTCAGTACATCCTTTCGAACGGGTACTGCCATGAGCGGGGTAGCTT TTGTTTGGCCTATAGACTAGTGGCAGCTCTTCAGCGGGACATGTGTCTGA GAAGATCTTCAGCGGGACGTGCGTTGAAGTTTGCAGCAGCAGTAGTAGCG AGGGTTGCTGACACCTGCCGGATACTGGGCCTCCGTGTGAGTCTGCCCAC AGTGGGGATCAACGCGGTTGCGGAAGAGGATTATTCGTCTTCGCCTGTGA GACCATGCGACATCGCACCTAAAACCGCGGGGCAAAGCAGCCTCAGCGCT ACAACAGACTCATTCATGCTCGCAGCGCTGTACACGGGTTGAAACCTCAT ATCTCGCGTTTTCCCCAGGCCCCAGTGAGATGTACATGGCTACTGGAGAC ACCTCTGTGCTCACGGTCCTTTGGATGGAAGTTTTCGGTTTCTTCTTTCG GGCGACTTACGCAAGAACGACGACACGAGATAGTGTTGCAGGGAAAGTTC GCCACCCTCTCGTGCACACATGGCCAATCCGCGTACGCCGAACCGTGTGC ATGCGCAGATGCGAGTAGGCAACACTCCGAGCATATTCTACGTTCCCGAC TTCATCTCGGGGGCAGACGAGCAACAACTGCTGGAGAGGATACACGCCGA AGCGAGCGGCAACGAGTGGGTCACGCTGAGGTCACGGCGGCTCAAGTGCT GGGGAGGGCAACCGGGGGAAAGCTTTCGTCCCGAGCCTCTGCCACCCTGG GTAGACGCGCTCTGCGAGTCGCTAGTGGTTCGGGGAGTTTTCTCCGAGAA GACGCGACCGAATCACGTCCTGCTCAATGGTGAGGAGAGGGAGTGGGAGT CGAGGTGGAGCTCTAGAAGATTAGGGAGGGGGTAGCGCTGATTCGGCCAT GAGAAGCGAAAGCAGAGATTCGTCCGGAGTGACTTCGGATCCTCATCACC TAGCTTCACGTGTGTTTCAAGTTGTTTTTCAGTTCGAAGAAGTGTGTGTG ACTTGCTGTGCTACCTACGTTGTGGGTTGTTTGCCTGTGACCGCTTCAGT TGGACCAGACGGACGTTAAGCGGGCATAGAGCAGAGGTCGGAACGGTGTT GGTGTGAAGACACCATCACAACAAACATAATGTTTGCAGCACCGCTCTAC CCTTGCACCCCCCCCCGCCCTCCACTCTCCATCGCACACACCCTTGACTA CGTATACCTAAAACACAACTCCCTCCAAATTATCATTCTCCTCTCCAGAG TATCAACCAGGCCAGGGGATCATGGCCCACACGGACGGGCCGTTCTACGA ACCGCGCACGGCCACGCTCAGCCTGGGAAGCGACGCCGTGATGCACTTCT CCCCCCGCGTAGAAACCAGCCGCATCGGTAGGCCAGGAGTGGAAACCCGG CCTCAGGCATCCCTGGTGCTGAGGGCGCTATCGTTGGTGGTCTTCGCCGA CGACGCCTACTCTCGACTGCTGCACAGCATAGACGCGGTCCGGGAAGAGA CGGTTGGTTGCAGTGGCAGCGCCGGCGATGGTGTTGACGAGCGCGGTGAT GGCGGCGGCGGCGCGCCTGTTATTAACGGAGCGGCTGCGGGGGCGCCGGA GGGGACCATCCTCAGACGAAAACTCAGGGTGTCGCTCACGTTCAGGAGGG TGCGCGTTGAGAGAGAGAGGTGAAGAAGAAACCGGCGGCAACGGACAAGA AAAAGACGCAGCTGCTTGTGTAGAAAGGAGTGAGCCGTAGACCCCATCAG GGATGACATTGGCTGGTTGAACGGGCGTGGCCGCGCGGTTTCTGGAGTGC CTTTGCCGTGTAAACACTTATAAAGGGCACGAGACTCACGGCCCTCGCTT CAGCGTTGGACTGTCTGCAGCTCCTGCGGCAGCGGCTTGTACATGTGCGC ACGGTGTTTCGAGTGATCCCTTTCAAATAGGGAATGCTGTGTTGCGGTTC TTTCGGAATCTACCTTTTCGAGAAAGATGTTGACTGGTTGAAAAGAGTAC ACACGACTAGCTCATCTCGTGATGCTCTTGCGCACTGGCTGGTCGTGTTG TGTAGTCCGTAGAACCCGATCGCCGTGGGGGTCTAGCAGCGATGCATGGT TCTGTTGGCCGGCCTCCTCCAGCCTCGAGATGTACGACTGTACACAGAAT TGTAAAATAATCATTTTGGTTCGTTAGTTAGGTTCGCTGGGCTCTTCGAT CAAAAACACGTACGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1499:14233..17147+

>mRNA_E-fasciculatus_F_contig1499.3536.1 ID=mRNA_E-fasciculatus_F_contig1499.3536.1|Name=mRNA_E-fasciculatus_F_contig1499.3536.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1890bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1499:14233..17147+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACAAGCCTCGATTTCCAGAGCCTTCTCAAGCAGGAGAAGGCGCTCCA
ACGAGCCCAGCTCGCCCAAAGTACCCGAACAACAACGACAGCAGTAGTGG
TGCAACAAGAGGACGAATCGGGCCCCGCACGGAGTAGGCTGAGCACTACA
TGTAGGCGGCGAGTTGAAGAGAGAAAGGCGGTGGGCACAAAGGAGCCGTC
GCAGCTCTTCGTGAAGCTTGCAGGGCGGCCGTCACTCGACATGGAAAAGA
TGACAAGCCTCGATTTCCAGAGCCTTCTCAAGCAGGAGAAGGCGCTCCAA
CGAGCCCAGCTCGCCCAAAGTACCCGAACAACAACGACAGCAGTAGTGGT
GCAACAAGAGGACGAATCGGGCCCCGCACGGAGTAGGCTGAGCACTACAT
GTAGGCGGCGAGTTGAAGAGAGAAAGGCGGTGGGCACAAAGGAGCCGTCG
CAGCTCTTCGTGAAGCTTGCAGGGCGGCCGTCACTCGACATGGAAAAGAT
GCGAGTAGGCAACACTCCGAGCATATTCTACGTTCCCGACTTCATCTCGG
GGGCAGACGAGCAACAACTGCTGGAGAGGATACACGCCGAAGCGAGCGGC
AACGAGTGGGTCACGCTGAGGTCACGGCGGCTCAAGTGCTGGGGAGGGCA
ACCGGGGGAAAGCTTTCGTCCCGAGCCTCTGCCACCCTGGGTAGACGCGC
TCTGCGAGTCGCTAGTGGTTCGGGGAGTTTTCTCCGAGAAGACGCGACCG
AATCACGTCCTGCTCAATGATGCGAGTAGGCAACACTCCGAGCATATTCT
ACGTTCCCGACTTCATCTCGGGGGCAGACGAGCAACAACTGCTGGAGAGG
ATACACGCCGAAGCGAGCGGCAACGAGTGGGTCACGCTGAGGTCACGGCG
GCTCAAGTGCTGGGGAGGGCAACCGGGGGAAAGCTTTCGTCCCGAGCCTC
TGCCACCCTGGGTAGACGCGCTCTGCGAGTCGCTAGTGGTTCGGGGAGTT
TTCTCCGAGAAGACGCGACCGAATCACGTCCTGCTCAATGAGTATCAACC
AGGCCAGGGGATCATGGCCCACACGGACGGGCCGTTCTACGAACCGCGCA
CGGCCACGCTCAGCCTGGGAAGCGACGCCGTGATGCACTTCTCCCCCCGC
GTAGAAACCAGCCGCATCGGTAGGCCAGGAGTGGAAACCCGGCCTCAGGC
ATCCCTGGTGCTGAGGGCGCTATCGTTGGTGGTCTTCGCCGACGACGCCT
ACTCTCGACTGCTGCACAGCATAGACGCGGTCCGGGAAGAGACGGTTGGT
TGCAGTGGCAGCGCCGGCGATGGTGTTGACGAGCGCGGTGATGGCGGCGG
CGGCGCGCCTGTTATTAACGGAGCGGCTGCGGGGGCGCCGGAGGGGACCA
TCCTCAGACGAAAACTCAGGGTGTCGCTCACGTTCAGGAGGGTGCGCGTT
GAGAGAGAGAGGTGAAGTATCAACCAGGCCAGGGGATCATGGCCCACACG
GACGGGCCGTTCTACGAACCGCGCACGGCCACGCTCAGCCTGGGAAGCGA
CGCCGTGATGCACTTCTCCCCCCGCGTAGAAACCAGCCGCATCGGTAGGC
CAGGAGTGGAAACCCGGCCTCAGGCATCCCTGGTGCTGAGGGCGCTATCG
TTGGTGGTCTTCGCCGACGACGCCTACTCTCGACTGCTGCACAGCATAGA
CGCGGTCCGGGAAGAGACGGTTGGTTGCAGTGGCAGCGCCGGCGATGGTG
TTGACGAGCGCGGTGATGGCGGCGGCGGCGCGCCTGTTATTAACGGAGCG
GCTGCGGGGGCGCCGGAGGGGACCATCCTCAGACGAAAACTCAGGGTGTC
GCTCACGTTCAGGAGGGTGCGCGTTGAGAGAGAGAGGTGA
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