mRNA_E-fasciculatus_F_contig1495.3514.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1495.3514.1
Unique NamemRNA_E-fasciculatus_F_contig1495.3514.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1495.3514.1 vs. uniprot
Match: D8LQG4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQG4_ECTSI)

HSP 1 Score: 339 bits (869), Expect = 5.040e-107
Identity = 233/293 (79.52%), Postives = 241/293 (82.25%), Query Frame = 2 
Query: 1013 MRANSEHWRVSYPQRTPIPRRPPTRFDTRRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVEVVSNKRAAGGPAADHGRAVRFDRVVKLILVPSRLDLSAGLSDELWWNEDDYLQFRLGAIVEGSSGVLGRTLRNKRSRRIQQPPAPARRTYQHGSKIAQALEKMDSHGGSTRPPIRRQFKVHLASSPSLRAQPVTPPPSPANPNESPT-----------EASGSSPRRKDQKGWSLAEGFDGLVGLGLLPGSVDP 1858
            MRANSEHWRV YPQRTPIPRRP TRFD RR+            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             GVE+VSNKRAAGGPAADHGRAVRFDRVVKLILVPSRLDLSAGLSDELWWNEDDYLQFRLGAIVEGSSGVLGRTLRNKRS+RIQ PPA AR TYQHG KIAQALE+MD HGGSTRPPIRRQFKVHL+SSPS R QPVTPPPSPAN NE+             +ASGSSPRRK  KGW+ AEGFDGLVGLGLLPGSVDP
Sbjct:   38 MRANSEHWRVRYPQRTPIPRRPSTRFDARRSAVGPAAARADSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGGT---------GVELVSNKRAAGGPAADHGRAVRFDRVVKLILVPSRLDLSAGLSDELWWNEDDYLQFRLGAIVEGSSGVLGRTLRNKRSKRIQ-PPAAARPTYQHG-KIAQALERMDGHGGSTRPPIRRQFKVHLSSSPSFRVQPVTPPPSPANANETSIGRGVADEMDHPDASGSSPRRKGHKGWTFAEGFDGLVGLGLLPGSVDP 319
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1495.3514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQG4_ECTSI5.040e-10779.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1495contigE-fasciculatus_F_contig1495:10082..13152 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_005540.1
Exons3
Model size1408
Cds size849
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1495.3514.1prot_E-fasciculatus_F_contig1495.3514.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1495 10539..12140 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927974.892351-UTR-E-fasciculatus_F_contig1495:10081..105381622927974.892351-UTR-E-fasciculatus_F_contig1495:10081..10538Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1495 10082..10538 -
1695995774.551105-UTR-E-fasciculatus_F_contig1495:10081..105381695995774.551105-UTR-E-fasciculatus_F_contig1495:10081..10538Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1495 10082..10538 -
1622927974.9412947-UTR-E-fasciculatus_F_contig1495:13050..131521622927974.9412947-UTR-E-fasciculatus_F_contig1495:13050..13152Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1495 13051..13152 -
1695995774.58068-UTR-E-fasciculatus_F_contig1495:13050..131521695995774.58068-UTR-E-fasciculatus_F_contig1495:13050..13152Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1495 13051..13152 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927974.9096148-CDS-E-fasciculatus_F_contig1495:10538..109261622927974.9096148-CDS-E-fasciculatus_F_contig1495:10538..10926Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1495 10539..10926 -
1695995774.5602574-CDS-E-fasciculatus_F_contig1495:10538..109261695995774.5602574-CDS-E-fasciculatus_F_contig1495:10538..10926Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1495 10539..10926 -
1622927974.9240012-CDS-E-fasciculatus_F_contig1495:11679..121401622927974.9240012-CDS-E-fasciculatus_F_contig1495:11679..12140Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1495 11680..12140 -
1695995774.5704734-CDS-E-fasciculatus_F_contig1495:11679..121401695995774.5704734-CDS-E-fasciculatus_F_contig1495:11679..12140Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1495 11680..12140 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1495.3514.1

>prot_E-fasciculatus_F_contig1495.3514.1 ID=prot_E-fasciculatus_F_contig1495.3514.1|Name=mRNA_E-fasciculatus_F_contig1495.3514.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=283bp
MRANSEHWRVSYPQRTPIPRRPPTRFDTRRAAAGPTAAAAAAAAAAAAAA
NSPPTPVFDLRQPSSSRRLLLLPAGRRPDEHRGAHQAAAAAAAASRGVEV
VSNKRAAGGPAADHGRAVRFDRVVKLILVPSRLDLSAGLSDELWWNEDDY
LQFRLGAIVEGSSGVLGRTLRNKRSRRIQQPPAPARRTYQHGSKIAQALE
KMDSHGGSTRPPIRRQFKVHLASSPSLRAQPVTPPPSPANPNESPTEASG
SSPRRKDQKGWSLAEGFDGLVGLGLLPGSVDP*
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mRNA from alignment at E-fasciculatus_F_contig1495:10082..13152-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1495.3514.1 ID=mRNA_E-fasciculatus_F_contig1495.3514.1|Name=mRNA_E-fasciculatus_F_contig1495.3514.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3071bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1495:10082..13152- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGGCCAGACAGCAGATAGCAGTGCACACCAGAGCACAGCCGTGGAACCA
GCGTGAGCGCAGCCCCCGCACACTAGAACACTCAGGTCTTCTGCCTGGAA
CGGTGAGTGGTGTCGAGCATATGCTTAGGTGCTTCTCCTCGCTTGCATTA
TCAGTTAGTGCTTACAGCAGTGCCGTGCAAAAGGACCACCCGAGAATCAA
AGCGTCGAATTTCGAAAGTTTATACCAGCACTTCGCGCACGTGTGGCACT
GCTATGCATATGGCTATGCATAGCTGCGTGTACAACCGAGGAGGCGTGCA
GAGGCAGGCGATCAGATGCAAGTTGGGCCCAGCGGGGCCTGGTTCTACTT
GCACGAAATGTCCCCGCCGCTGGCGAGAGCAAGATTGGTTGAAAGACAAG
TCGATCACACCGCCGTGTGTTGCGAATTTGGCTGCCTGCTGGAACGTCCC
TCCCCAACGTGGCACAAACGTCGTTGGGGTCTGACTTTGCCTGCCGATAG
GAGGTTTTTCAGTCGAGACGCGTAGCAGGTTCCGGGAGTACTGCTAACTA
GGCCGTGCCTTTCAGACGCTAGCAGCGAGCTGTACATCTGCAACTCCTCT
GGTTGGATAGCTGTTGATTCATGGAGGACACCCATGTTTATTTGTCCTGA
ACTTGGTCATCGATCATGACGGCGGTTGCGCGTCAGATTTGGCACTTCCC
GCTTCTCTGTAACGGTTCTGTTGCCAACCAGCTCTTACCAACCCGACAGA
CTGCTGTGATTGAGCAGTTAGTTACGGGGATCGCGAAGCTCTGTCCCTCA
TGAATCTGTTGTTGTGTCCACAACAACGACGGCCACTGGCGCCACGCTGT
ATTACTGATGCAACACCTTTGTACAACTTCTTCTCCGCACCCCCCAACGG
TAAGGACACCAAACACCAGCGGGCTAACTTTGCTTGTTCCCGCTCGCCAA
ACCCCCGCCGCCGCCGCCGCTGCCGCCACCGTCCGTCACCTTTCAATCTT
TCGATGCGCCAGATGCGTGCCAACTCTGAGCACTGGCGAGTGAGCTACCC
ACAGAGAACTCCTATCCCGAGGAGACCCCCTACGAGATTCGACACACGTC
GAGCGGCCGCAGGCCCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCGAATTCGCCGCCAACGCCGGTGTTCGATCTGAGGCAACC
CTCTTCGTCGAGGAGGTTGTTGCTGTTGCCGGCAGGGCGGCGACCGGACG
AACACCGTGGTGCGCATCAGGCCGCCGCCGCTGCTGCTGCCGCTAGCCGC
GGTGTTGAGGTTGTCAGCAACAAGCGGGCGGCGGGCGGCCCGGCCGCCGA
TCACGGCCGCGCGGTCCGCTTCGACCGCGTCGTGAAGCTGATCCTGGTGC
CGAGCCGCCTCGACTTGAGCGCCGGTCTGAGCGACGAGCTGTGGTGGAAC
GAGGACGACTACTTGCAGTTCAGGTGAAGGATGCAGCAGCAGCAGCAGCC
TTGGTGCTTATTTGTTTTCATAACTGATGTATGACCTTTGCACGCTAGAG
TTTATGACACTGGCGAAGGAGACACGAATCTTGGCACTCGCATCGTATGT
TTCTGTACCGAGATGTGAGGGGATAACCTTTTTTTTTTTCTTTCTTAATA
TGACACAACCAACCCATCTCTATCCACCGATAGAAAAGTCTAGGATAGAT
TAGCAATGAATCCATAGCGTCAGCTTTTTGTGATATCTAGTTTTGTTCCC
GCCCAGGACCACATGACCACTGGTATATCGTCTGCAGCGGTGTAGACATG
TTCGGAGGAACACGGTCGGTCGATGTAAGCATGTAAGCCTCACTCAAGGC
TTCGCTTCTCGATTCGTGACAGCATATTCATTTTTTTTCATTGAACAACA
CATGGTTTTTCGTTCGACTGCCTGCCTGCCTCTCTAGATTTAGTGTGCTA
CTTCGCCTCGATTAGACTCCGAGCAACAGACTCGCCCCGTGGCCGCTTAG
ATAACCAACCACGACTTCCAAACGCGACTAAATATTTACAGCAGTAGTGT
GTTGACACCATCATGGGACGCAGCCAATGGCGCGTGCCTCGCGTTACAAA
AAAAAAAAAAAAATGTGGGTGGGGAGCGATGTTCTGGAAATCGTTCTGCA
AGCACTTAAGAGAGCTTCGACCAACCACTTCCGGCCGTTCCCTCATGTCC
CCAACCCCCCCCCCTGTTATTTTTAGATTGGGTGCCATAGTGGAGGGTAG
TTCCGGGGTATTGGGAAGGACTCTCCGGAATAAGCGATCCAGGCGCATCC
AACAACCGCCAGCCCCCGCCAGGCGGACCTATCAACACGGATCAAAGATA
GCCCAGGCGCTGGAAAAAATGGACAGCCACGGTGGCAGCACGCGCCCCCC
CATCCGGCGGCAGTTTAAGGTTCATCTAGCATCTTCCCCCTCCTTACGAG
CCCAGCCGGTGACCCCGCCCCCTTCTCCGGCCAACCCCAACGAGAGTCCC
ACCGAAGCTTCAGGGTCCTCCCCTCGGCGCAAGGACCAAAAGGGGTGGTC
CTTGGCGGAGGGGTTCGATGGCCTGGTTGGCCTTGGCCTCCTACCGGGGT
CAGTGGATCCCTGATAGAGGCAAGCGGTGACGACGACTGCAGTGATGGGA
GTATCTGCTGGCGAGCGGTCGGAGGCGCGGACGGCCGAGTGGCCGCCGGC
CTGGCAGGGATTGTAGCGTTTTCGCTAGGGGGGCGATGTCGAGGGTGAGG
TGATGCTTCCAAGGGTGGCGTCAACTGTTCAACTTGTATGGTTCCGTGTA
TGAAGTTGTGATTGTTGTGATAGTGGTGCTTGTGAAGGCATGGTACTGGC
GATTGTGGTTTGCCGCTGGTGGTGATGTTGGTGCTGTGAGGACAGTAGTT
CGAGTGGGAAGTTTTGCTATTTTTTTTCTTTTTTCTGTGCTGGTCACGGA
GCAATTTTGAAACAATTTTGAAAAACAGTTTTGTTGTCTGTGCTGTTCAT
CAGTGTTGAGTGTAAGGTGTTGGCATTCTGAATTTGGTTCATTTCTCTTG
TTCAGGGTATGCGTGCGCGTC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1495:10082..13152-

>mRNA_E-fasciculatus_F_contig1495.3514.1 ID=mRNA_E-fasciculatus_F_contig1495.3514.1|Name=mRNA_E-fasciculatus_F_contig1495.3514.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1698bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1495:10082..13152- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGTGCCAACTCTGAGCACTGGCGAGTGAGCTACCCACAGAGAACTCC
TATCCCGAGGAGACCCCCTACGAGATTCGACACACGTCGAGCGGCCGCAG
GCCCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCG
AATTCGCCGCCAACGCCGGTGTTCGATCTGAGGCAACCCTCTTCGTCGAG
GAGGTTGTTGCTGTTGCCGGCAGGGCGGCGACCGGACGAACACCGTGGTG
CGCATCAGGCCGCCGCCGCTGCTGCTGCCGCTAGCCGCGGTGTTGAGGTT
GTCAGCAACAAGCGGGCGGCGGGCGGCCCGGCCGCCGATCACGGCCGCGC
GGTCCGCTTCGACCGCGTCGTGAAGCTGATCCTGGTGCCGAGCCGCCTCG
ACTTGAGCGCCGGTCTGAGCGACGAGCTGTGGTGGAACGAGGACGACTAC
TTGCAGTTCAGATGCGTGCCAACTCTGAGCACTGGCGAGTGAGCTACCCA
CAGAGAACTCCTATCCCGAGGAGACCCCCTACGAGATTCGACACACGTCG
AGCGGCCGCAGGCCCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCGAATTCGCCGCCAACGCCGGTGTTCGATCTGAGGCAACCC
TCTTCGTCGAGGAGGTTGTTGCTGTTGCCGGCAGGGCGGCGACCGGACGA
ACACCGTGGTGCGCATCAGGCCGCCGCCGCTGCTGCTGCCGCTAGCCGCG
GTGTTGAGGTTGTCAGCAACAAGCGGGCGGCGGGCGGCCCGGCCGCCGAT
CACGGCCGCGCGGTCCGCTTCGACCGCGTCGTGAAGCTGATCCTGGTGCC
GAGCCGCCTCGACTTGAGCGCCGGTCTGAGCGACGAGCTGTGGTGGAACG
AGGACGACTACTTGCAGTTCAGATTGGGTGCCATAGTGGAGGGTAGTTCC
GGGGTATTGGGAAGGACTCTCCGGAATAAGCGATCCAGGCGCATCCAACA
ACCGCCAGCCCCCGCCAGGCGGACCTATCAACACGGATCAAAGATAGCCC
AGGCGCTGGAAAAAATGGACAGCCACGGTGGCAGCACGCGCCCCCCCATC
CGGCGGCAGTTTAAGGTTCATCTAGCATCTTCCCCCTCCTTACGAGCCCA
GCCGGTGACCCCGCCCCCTTCTCCGGCCAACCCCAACGAGAGTCCCACCG
AAGCTTCAGGGTCCTCCCCTCGGCGCAAGGACCAAAAGGGGTGGTCCTTG
GCGGAGGGGTTCGATGGCCTGGTTGGCCTTGGCCTCCTACCGGGGTCAGT
GGATCCCTGAATTGGGTGCCATAGTGGAGGGTAGTTCCGGGGTATTGGGA
AGGACTCTCCGGAATAAGCGATCCAGGCGCATCCAACAACCGCCAGCCCC
CGCCAGGCGGACCTATCAACACGGATCAAAGATAGCCCAGGCGCTGGAAA
AAATGGACAGCCACGGTGGCAGCACGCGCCCCCCCATCCGGCGGCAGTTT
AAGGTTCATCTAGCATCTTCCCCCTCCTTACGAGCCCAGCCGGTGACCCC
GCCCCCTTCTCCGGCCAACCCCAACGAGAGTCCCACCGAAGCTTCAGGGT
CCTCCCCTCGGCGCAAGGACCAAAAGGGGTGGTCCTTGGCGGAGGGGTTC
GATGGCCTGGTTGGCCTTGGCCTCCTACCGGGGTCAGTGGATCCCTGA
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