mRNA_E-fasciculatus_F_contig14896.3483.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14896.3483.1
Unique NamemRNA_E-fasciculatus_F_contig14896.3483.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14896.3483.1 vs. uniprot
Match: A0A6H5KUK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUK1_9PHAE)

HSP 1 Score: 496 bits (1278), Expect = 4.340e-157
Identity = 273/340 (80.29%), Postives = 284/340 (83.53%), Query Frame = 1 
Query:    1 LSYREILFNNDGKLRPPYSAGPCASASAGYLFPKPAGGTAAVPRANSRMDESTSTPRNDFYFSERYCPATATGPGRPAPPLDLLTASLKLTGQHKLSLGRFRDVDDVRILSRANGEQASAGRAGGVIGDGAAAAA-DRWATSNGKGKDSREVS-----------AAAVGPDEPRARPATRRVGTYERERQQRCSVLHYLTMASTPRPAAAPVHSTADGHAAAAALHAARTVATAXXXXXXXXXXXXTRPEGATAAALLAAMRERPWEGRPNAGSAQDWAEWLEHLAPTLERHLRWLVVDGLAAQLDGAGEREARFVAVMKEEEEA-VEPGGPESAAPGAG 981
            LSYREILFNNDGKLRPPYSAGPCASASAGYLFPKPAGGTAAVPRA+SRMDE++STPRNDFYFSERYCPATATGP RPAPPLDLLTASLKLTGQHKLSLGRFRDVD+V   +RANGEQASAGRAGGV+  GAAAAA  RWA SNGKGKDS  VS           AAAVGPDEPRARPATRRVGTYERERQQRCSVLHYLT+ASTPRP AA V               A ++ TA            TRPEGATAAALLAAMRERPWEGRPNAGSAQDWAEWLEHL PTLERHLRWLVVDGLAAQLDGAGEREARFVAV+KE+EEA VEPGGPESAAP AG
Sbjct: 2312 LSYREILFNNDGKLRPPYSAGPCASASAGYLFPKPAGGTAAVPRASSRMDEASSTPRNDFYFSERYCPATATGPERPAPPLDLLTASLKLTGQHKLSLGRFRDVDEVGTTARANGEQASAGRAGGVVEGGAAAAAVARWANSNGKGKDSGVVSWAXXXXXXAPPAAAVGPDEPRARPATRRVGTYERERQQRCSVLHYLTIASTPRPGAAAVD--------------AASMVTATSDAISRSTSSATRPEGATAAALLAAMRERPWEGRPNAGSAQDWAEWLEHLTPTLERHLRWLVVDGLAAQLDGAGEREARFVAVVKEDEEAAVEPGGPESAAPSAG 2637
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BLAST of mRNA_E-fasciculatus_F_contig14896.3483.1 vs. uniprot
Match: D7FKG6_ECTSI (Zinc finger, CW-type with coiled-coil domain 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKG6_ECTSI)

HSP 1 Score: 363 bits (932), Expect = 1.340e-110
Identity = 215/328 (65.55%), Postives = 224/328 (68.29%), Query Frame = 1 
Query:    1 LSYREILFNNDGKLRPPYSAGPCASASAGYLFPKPAGGTAAVPRANSRMDESTSTPRNDFYFSERYCPATATGPGRPAPPLDLLTASLKLTGQHKLSLGRFRDVDDVRILSRANGEQASAGRAGGVIGDGAAAAADRWATSNGKGKDSREVSAAAVGPDEPRARPATRRVGTYERERQQRCSVLHYLTMASTPRPAAAPVHSTADGHAAAAALHAARTVATAXXXXXXXXXXXXTRPEGATAAALLAAMRERPWEGRPNAGSAQDWAEWLEHLAPTLERHLRWLVVDGLAAQLDGAGEREARFVAVMKEEEEA-VEPGGPESAAPGAG 981
            LSYREILFNNDGKLRPPYSAGPCASASAGYLFPKPAGGTAAVPRA+SRMDE++STPRNDFYFSERYCPATATGPGRPAPPLDLLTASLKLTGQHKLSLGRFRDVD+V   ++ANGEQASAGRAGGV+                                           G                                                        XXXXXXX RPEGATAAALLAAMRERPWEGRPNAGSAQDWAEWLEHLAPTLERHLRWLVVDGLAAQLDGAGEREARFVAV+KE+EEA VEPGGPESAAPGAG
Sbjct: 2246 LSYREILFNNDGKLRPPYSAGPCASASAGYLFPKPAGGTAAVPRASSRMDETSSTPRNDFYFSERYCPATATGPGRPAPPLDLLTASLKLTGQHKLSLGRFRDVDEVGATAKANGEQASAGRAGGVV------------------------------------------EGXXXXXXXXXXXXXXXXXX--------------------------------------XXXXXXXXRPEGATAAALLAAMRERPWEGRPNAGSAQDWAEWLEHLAPTLERHLRWLVVDGLAAQLDGAGEREARFVAVVKEDEEAAVEPGGPESAAPGAG 2493
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14896.3483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KUK1_9PHAE4.340e-15780.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKG6_ECTSI1.340e-11065.55Zinc finger, CW-type with coiled-coil domain 3 n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14896contigE-fasciculatus_F_contig14896:96..1679 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score368.2
Seed ortholog evalue3.9e-99
Seed eggNOG ortholog2880.D7FKG6
EggNOG free text desc.CW-type Zinc Finger
EggNOG OGs2CZZ0@1,2SC6K@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size985
Cds size981
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927970.4322681-CDS-E-fasciculatus_F_contig14896:95..2261622927970.4322681-CDS-E-fasciculatus_F_contig14896:95..226Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14896 96..226 +
1695995772.3695867-CDS-E-fasciculatus_F_contig14896:95..2261695995772.3695867-CDS-E-fasciculatus_F_contig14896:95..226Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14896 96..226 +
1622927970.4468267-CDS-E-fasciculatus_F_contig14896:827..16771622927970.4468267-CDS-E-fasciculatus_F_contig14896:827..1677Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14896 828..1677 +
1695995772.3811269-CDS-E-fasciculatus_F_contig14896:827..16771695995772.3811269-CDS-E-fasciculatus_F_contig14896:827..1677Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14896 828..1677 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14896.3483.1prot_E-fasciculatus_F_contig14896.3483.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14896 96..1677 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14896.3483.1

>prot_E-fasciculatus_F_contig14896.3483.1 ID=prot_E-fasciculatus_F_contig14896.3483.1|Name=mRNA_E-fasciculatus_F_contig14896.3483.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=327bp
LSYREILFNNDGKLRPPYSAGPCASASAGYLFPKPAGGTAAVPRANSRMD
ESTSTPRNDFYFSERYCPATATGPGRPAPPLDLLTASLKLTGQHKLSLGR
FRDVDDVRILSRANGEQASAGRAGGVIGDGAAAAADRWATSNGKGKDSRE
VSAAAVGPDEPRARPATRRVGTYERERQQRCSVLHYLTMASTPRPAAAPV
HSTADGHAAAAALHAARTVATASGAASPPTSSSATRPEGATAAALLAAMR
ERPWEGRPNAGSAQDWAEWLEHLAPTLERHLRWLVVDGLAAQLDGAGERE
ARFVAVMKEEEEAVEPGGPESAAPGAG
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mRNA from alignment at E-fasciculatus_F_contig14896:96..1679+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14896.3483.1 ID=mRNA_E-fasciculatus_F_contig14896.3483.1|Name=mRNA_E-fasciculatus_F_contig14896.3483.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1584bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14896:96..1679+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCTCTTACCGAGAGATCCTGTTCAACAACGACGGAAAACTCAGGCCTCC
GTACTCTGCCGGGCCTTGCGCGAGCGCGTCCGCCGGCTACCTCTTCCCGA
AGCCTGCTGGCGGCACGGCGGCGGTCCCGAGGTGAGCATGTCCGCCCCGA
TGTTGTGGTTTGTTCCTAGCGCTGTATGTATATACACGGATACACGGTTG
CGTGTTATTGGCGGGTGGATGCTGGGCGTGTCCTTCACGGACGGGACGAG
GTCGGTCCCGCCATATATGTGGTGTGGACGGCATGTGTCGCTGTGCTGCG
AAGACCACACAGGCCGCACACGGTTGGCGGCTTGTTGCGGGCTGCTTCTT
TCAGTTTCTTGCGCGTTCCGGTTCCACCATCGTGGTTGACAATTCCCCGC
CCCATGGCAGCCGCAGAAGTCTGCGGCGGGTATGGTCGCGTACTTGTCGG
GTTGCGGACCTCGTCGTGGCGCCAATTTGGCGTTAGGTATCGTATCCACC
GTGCCTCTAGCCTTTGGTGTTTTTGAGTCCTCGCGTAAGCCGTTTCTCCT
TCCTCTCAGCCTCTCGACGTATCTGCGTTGATCTGCCGGGACATGTCATC
AAGTTGTGACGCCTCTGCAGTGTAGAGGGGGATTCAAGACGCAAAAAACA
CAACCTAATTTGTTCCTGTACATGCTTCTCTTGTGCTCCATTCTCGTCTT
TTGGGCTCCCGCCCCTCGGTTGTGTTTTGAAGAGCGAATTCCCGGATGGA
CGAGTCGACTTCAACACCCCGCAACGATTTCTACTTTTCGGAGAGATACT
GCCCCGCCACGGCGACGGGCCCGGGTAGGCCTGCGCCGCCGCTTGACCTC
CTCACCGCTTCCCTCAAGCTCACCGGCCAGCACAAGCTATCGCTCGGAAG
GTTTCGAGATGTGGACGACGTCAGAATCTTGTCTAGGGCCAACGGAGAGC
AAGCGAGCGCAGGCAGAGCGGGAGGCGTCATCGGGGACGGGGCGGCGGCG
GCGGCGGATAGGTGGGCGACTTCTAACGGGAAAGGGAAGGACTCGAGAGA
GGTTTCGGCGGCGGCCGTCGGGCCTGATGAGCCACGGGCGCGGCCGGCAA
CCCGTCGAGTCGGGACGTACGAACGAGAGCGGCAGCAACGGTGCTCGGTA
CTGCACTACCTGACGATGGCTTCTACCCCTCGACCGGCCGCCGCTCCCGT
TCACTCCACCGCCGATGGCCACGCCGCCGCCGCCGCTTTGCACGCCGCCA
GGACGGTCGCCACCGCGAGCGGTGCCGCTTCTCCTCCTACGTCGTCGTCC
GCGACACGACCGGAAGGTGCGACGGCGGCGGCTCTGTTGGCAGCGATGCG
GGAGCGGCCGTGGGAAGGCAGGCCCAACGCCGGTTCCGCTCAAGACTGGG
CGGAGTGGCTGGAGCACCTGGCACCGACCCTGGAGCGGCACCTCCGGTGG
CTTGTAGTCGACGGCCTGGCGGCGCAGTTGGACGGGGCCGGCGAGAGGGA
GGCGCGGTTCGTAGCCGTCATGAAGGAGGAGGAAGAGGCGGTGGAACCCG
GCGGGCCAGAGTCCGCCGCCCCGGGCGCGGGGGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14896:96..1679+

>mRNA_E-fasciculatus_F_contig14896.3483.1 ID=mRNA_E-fasciculatus_F_contig14896.3483.1|Name=mRNA_E-fasciculatus_F_contig14896.3483.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1962bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14896:96..1679+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCTCTTACCGAGAGATCCTGTTCAACAACGACGGAAAACTCAGGCCTCC
GTACTCTGCCGGGCCTTGCGCGAGCGCGTCCGCCGGCTACCTCTTCCCGA
AGCCTGCTGGCGGCACGGCGGCGGTCCCGAGCTCTCTTACCGAGAGATCC
TGTTCAACAACGACGGAAAACTCAGGCCTCCGTACTCTGCCGGGCCTTGC
GCGAGCGCGTCCGCCGGCTACCTCTTCCCGAAGCCTGCTGGCGGCACGGC
GGCGGTCCCGAGAGCGAATTCCCGGATGGACGAGTCGACTTCAACACCCC
GCAACGATTTCTACTTTTCGGAGAGATACTGCCCCGCCACGGCGACGGGC
CCGGGTAGGCCTGCGCCGCCGCTTGACCTCCTCACCGCTTCCCTCAAGCT
CACCGGCCAGCACAAGCTATCGCTCGGAAGGTTTCGAGATGTGGACGACG
TCAGAATCTTGTCTAGGGCCAACGGAGAGCAAGCGAGCGCAGGCAGAGCG
GGAGGCGTCATCGGGGACGGGGCGGCGGCGGCGGCGGATAGGTGGGCGAC
TTCTAACGGGAAAGGGAAGGACTCGAGAGAGGTTTCGGCGGCGGCCGTCG
GGCCTGATGAGCCACGGGCGCGGCCGGCAACCCGTCGAGTCGGGACGTAC
GAACGAGAGCGGCAGCAACGGTGCTCGGTACTGCACTACCTGACGATGGC
TTCTACCCCTCGACCGGCCGCCGCTCCCGTTCACTCCACCGCCGATGGCC
ACGCCGCCGCCGCCGCTTTGCACGCCGCCAGGACGGTCGCCACCGCGAGC
GGTGCCGCTTCTCCTCCTACGTCGTCGTCCGCGACACGACCGGAAGGTGC
GACGGCGGCGGCTCTGTTGGCAGCGATGCGGGAGCGGCCGTGGGAAGGCA
GGCCCAACGCCGGTTCCGCTCAAGACTGGGCGGAGTGGCTGGAGCACCTG
GCACCGACCCTGGAGCGGCACCTCCGGTGGCTTGTAGTCGACGGCCTGGC
GGCGCAGTTGGACGGGGCCGGCGAGAGGGAGGCGCGGTTCGTAGCCGTCA
TGAAGGAGGAGGAAGAGGCGGTGGAACCCGGCGGGCCAGAGTCCGCCGCC
CCGGGCGCGGGGAGCGAATTCCCGGATGGACGAGTCGACTTCAACACCCC
GCAACGATTTCTACTTTTCGGAGAGATACTGCCCCGCCACGGCGACGGGC
CCGGGTAGGCCTGCGCCGCCGCTTGACCTCCTCACCGCTTCCCTCAAGCT
CACCGGCCAGCACAAGCTATCGCTCGGAAGGTTTCGAGATGTGGACGACG
TCAGAATCTTGTCTAGGGCCAACGGAGAGCAAGCGAGCGCAGGCAGAGCG
GGAGGCGTCATCGGGGACGGGGCGGCGGCGGCGGCGGATAGGTGGGCGAC
TTCTAACGGGAAAGGGAAGGACTCGAGAGAGGTTTCGGCGGCGGCCGTCG
GGCCTGATGAGCCACGGGCGCGGCCGGCAACCCGTCGAGTCGGGACGTAC
GAACGAGAGCGGCAGCAACGGTGCTCGGTACTGCACTACCTGACGATGGC
TTCTACCCCTCGACCGGCCGCCGCTCCCGTTCACTCCACCGCCGATGGCC
ACGCCGCCGCCGCCGCTTTGCACGCCGCCAGGACGGTCGCCACCGCGAGC
GGTGCCGCTTCTCCTCCTACGTCGTCGTCCGCGACACGACCGGAAGGTGC
GACGGCGGCGGCTCTGTTGGCAGCGATGCGGGAGCGGCCGTGGGAAGGCA
GGCCCAACGCCGGTTCCGCTCAAGACTGGGCGGAGTGGCTGGAGCACCTG
GCACCGACCCTGGAGCGGCACCTCCGGTGGCTTGTAGTCGACGGCCTGGC
GGCGCAGTTGGACGGGGCCGGCGAGAGGGAGGCGCGGTTCGTAGCCGTCA
TGAAGGAGGAGGAAGAGGCGGTGGAACCCGGCGGGCCAGAGTCCGCCGCC
CCGGGCGCGGGG
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