mRNA_E-fasciculatus_F_contig14775.3412.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14775.3412.1
Unique NamemRNA_E-fasciculatus_F_contig14775.3412.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14775.3412.1 vs. uniprot
Match: A0A6H5JKZ1_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKZ1_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 1.990e-58
Identity = 94/98 (95.92%), Postives = 95/98 (96.94%), Query Frame = 1
Query:    1 RDLKDEYVGLDCAVLGVSADHEVSHGKFIAKYGLNFRLLADTDRSLIKSYGASKAGDKIQRSTVLVDKEGKVAAVWNPVSGAEQHPVQVLAKLKEIMV 294
            RDLKDEY  LDCAVLGVSADHEVSHGKFIAKYGLNFRLLADTDRSLIKSYGASKAGDKIQRSTVLVDKEGKVAAVWNPV GAEQHPVQVLAKLKEIM+
Sbjct:  142 RDLKDEYDRLDCAVLGVSADHEVSHGKFIAKYGLNFRLLADTDRSLIKSYGASKAGDKIQRSTVLVDKEGKVAAVWNPVIGAEQHPVQVLAKLKEIMM 239          
BLAST of mRNA_E-fasciculatus_F_contig14775.3412.1 vs. uniprot
Match: A0A6H5J6N3_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J6N3_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 1.030e-38
Identity = 68/96 (70.83%), Postives = 78/96 (81.25%), Query Frame = 1
Query:    1 RDLKDEYVGLDCAVLGVSADHEVSHGKFIAKYGLNFRLLADTDRSLIKSYGASKAGD--KIQRSTVLVDKEGKVAAVWNPVSGAEQHPVQVLAKLK 282
            RDL+ +Y  LDC VLGVSAD E SH  FIA  GLNF LLADTD+SLI +YGA KA D  KIQRSTV++DKEGKVAAVWNPV+ AE+HPV+VL K+K
Sbjct:   95 RDLQSDYDALDCVVLGVSADSEASHQDFIADLGLNFSLLADTDKSLINAYGAMKAEDENKIQRSTVVIDKEGKVAAVWNPVTAAEEHPVEVLEKIK 190          
BLAST of mRNA_E-fasciculatus_F_contig14775.3412.1 vs. uniprot
Match: A0A7S2V4W9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4W9_9STRA)

HSP 1 Score: 101 bits (252), Expect = 2.090e-25
Identity = 50/95 (52.63%), Postives = 65/95 (68.42%), Query Frame = 1
Query:    1 RDLKDEYVGLDCAVLGVSADHEVSHGKFIAKYGLNFRLLADTDRSLIKSYGASK--AGDKIQRSTVLVDKEGKVAAVWNPVSGAEQHPVQVLAKL 279
            RDLK E+   +C +LGVSAD E SH +FIA++  NF LLADT R ++ +YGA     G K+ RS+VL+  +G V AVWNPV  A +HP +VLA L
Sbjct:   58 RDLKAEFDAKNCVILGVSADDEESHQRFIAEHSFNFHLLADTSRQMVGAYGAESDPPGVKVMRSSVLIGGDGLVRAVWNPVKNAGEHPDEVLAAL 152          
BLAST of mRNA_E-fasciculatus_F_contig14775.3412.1 vs. uniprot
Match: A0A7S2V6E0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6E0_9STRA)

HSP 1 Score: 100 bits (249), Expect = 3.350e-25
Identity = 53/97 (54.64%), Postives = 68/97 (70.10%), Query Frame = 1
Query:    1 RDLKDEYVGLDCAVLGVSADHEVSHGKFIAKYGLNFRLLADTDRSLIKSYGASKAGDKIQRSTVLVDKEGKVAAVWNPVSG-AEQHPVQVLAKLKEI 288
            RDLK ++   +C +LGVSAD E SH KFI KY LNF LL+D  R LIK++GAS AG+KI+RS+VLVD E  VA  W   +  A +HP +VL  LK++
Sbjct:   32 RDLKSQFDDRNCKILGVSADSENSHKKFIGKYDLNFDLLSDPSRDLIKAFGASAAGNKIKRSSVLVDPELIVAKYWPQATPTAAKHPEEVLETLKDL 128          
BLAST of mRNA_E-fasciculatus_F_contig14775.3412.1 vs. uniprot
Match: F0SF50_RUBBR (Peroxiredoxin n=1 Tax=Rubinisphaera brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / IAM 15109 / NBRC 103401 / IFAM 1448) TaxID=756272 RepID=F0SF50_RUBBR)

HSP 1 Score: 85.1 bits (209), Expect = 8.030e-19
Identity = 47/103 (45.63%), Postives = 60/103 (58.25%), Query Frame = 1
Query:    1 RDLKDEYVGLDCAVLGVSADHEVSHGKFIAKYGLNFRLLADTDRSLIKSYGA-------SKAGDKIQRSTVLVDKEGKVAAVWNPVSGAEQHPVQVLAKLKEI 288
            RD    + G DC +LG+S D   SH KF  K+ L F LLAD D ++ + YG         K G  IQR+T L+DKEGKVAA+W  V   + H  +V AKLKE+
Sbjct:   59 RDNLPRFEGEDCVILGISPDSVESHEKFAKKFELPFTLLADEDHAIAEKYGVWVEKNRFGKIGMGIQRATFLIDKEGKVAAIWPKVK-VDGHSEEVEAKLKEV 160          
BLAST of mRNA_E-fasciculatus_F_contig14775.3412.1 vs. uniprot
Match: A0A2E1E1Y8_9CHLR (Peroxiredoxin n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A2E1E1Y8_9CHLR)

HSP 1 Score: 85.5 bits (210), Expect = 9.680e-19
Identity = 41/94 (43.62%), Postives = 59/94 (62.77%), Query Frame = 1
Query:    1 RDLKDEYVGLDCAVLGVSADHEVSHGKFIAKYGLNFRLLADTDRSLIKSYG----ASKAGDKIQRSTVLVDKEGKVAAVWNPVSGAEQHPVQVL 270
            RDL  E++ ++C V+G+SAD +VSH +F A+YGLNF LL+D + +  K +G    + K GD I R T L+++ G V  VW  +   E HP  VL
Sbjct:   85 RDLNAEFLKMNCEVIGISADSQVSHKEFSAQYGLNFNLLSDPNYNACKDFGTYFISEKFGDSILRQTFLINEVGLVLNVWKEIKDPENHPEDVL 178          
BLAST of mRNA_E-fasciculatus_F_contig14775.3412.1 vs. uniprot
Match: A0A5Q4H613_9PLAN (Thioredoxin-dependent thiol peroxidase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A5Q4H613_9PLAN)

HSP 1 Score: 83.6 bits (205), Expect = 2.910e-18
Identity = 50/103 (48.54%), Postives = 57/103 (55.34%), Query Frame = 1
Query:    1 RDLKDEYVGLDCAVLGVSADHEVSHGKFIAKYGLNFRLLADTDRSLIKSYGA-------SKAGDKIQRSTVLVDKEGKVAAVWNPVSGAEQHPVQVLAKLKEI 288
            RD K E       VLGVS D E  H KF  KY LNFRLLAD D  + + YGA        K    IQRST L+D +GKVA VW  V   + H  QVLA L+E+
Sbjct:   55 RDRKAELEARGAVVLGVSPDSEERHAKFRDKYDLNFRLLADADHQVAEKYGAWREKNMYGKKSMGIQRSTYLIDADGKVARVWQRVK-VDGHDEQVLAALQEL 156          
BLAST of mRNA_E-fasciculatus_F_contig14775.3412.1 vs. uniprot
Match: A0A535A4C1_9DELT (Thioredoxin peroxidase n=2 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A535A4C1_9DELT)

HSP 1 Score: 82.8 bits (203), Expect = 5.550e-18
Identity = 50/103 (48.54%), Postives = 62/103 (60.19%), Query Frame = 1
Query:    1 RDLKDEYVGLDCAVLGVSADHEVSHGKFIAKYGLNFRLLADTDRSLIKSYGASKAGDKIQ---------RSTVLVDKEGKVAAVWNPVSGAEQHPVQVLAKLK 282
            RD   E   L+  VLGVSAD E SH KFIAKY L F LL+D DR ++++YGA   G+K+          RSTV +  +GKV   W  VS A +HP QVLA L+
Sbjct:   54 RDAWKEIGKLEAVVLGVSADGEASHQKFIAKYKLPFPLLSDPDRKVMQTYGAY--GEKMMYGKKTVGVIRSTVWIGPDGKVRKHWARVSDAAKHPEQVLAALR 154          
BLAST of mRNA_E-fasciculatus_F_contig14775.3412.1 vs. uniprot
Match: A0A0D8ZVQ0_9CYAN (Alkyl hydroperoxide reductase n=4 Tax=Cyanobacteria TaxID=1117 RepID=A0A0D8ZVQ0_9CYAN)

HSP 1 Score: 82.4 bits (202), Expect = 6.160e-18
Identity = 47/93 (50.54%), Postives = 57/93 (61.29%), Query Frame = 1
Query:    1 RDLKDEYVGLDCAVLGVSADHEVSHGKFIAKYGLNFRLLADTDRSLIKSYGASKAGDKIQRSTVLVDKEGKVAAVWNPVSGAEQHPVQVLAKL 279
            RD  +EY G D  VLGVSAD EVSH +F  KY LNF LLADTD+SLIK+Y     G   +R T ++D  GK+  V + V+    H   VLA L
Sbjct:   53 RDASNEYQGKDVVVLGVSADDEVSHQQFTQKYNLNFPLLADTDKSLIKAYDVD-GGGYAKRVTYVIDGNGKIVHVDSSVN-TSSHASDVLAAL 143          
BLAST of mRNA_E-fasciculatus_F_contig14775.3412.1 vs. uniprot
Match: A0A518IX64_9BACT (Peroxiredoxin bcp n=4 Tax=Rosistilla TaxID=2795779 RepID=A0A518IX64_9BACT)

HSP 1 Score: 80.9 bits (198), Expect = 3.360e-17
Identity = 47/104 (45.19%), Postives = 57/104 (54.81%), Query Frame = 1
Query:    1 RDLKDEYVGLDCAVLGVSADHEVSHGKFIAKYGLNFRLLADTDRSLIKSYGA-------SKAGDKIQRSTVLVDKEGKVAAVWN--PVSGAEQHPVQVLAKLKE 285
            RD  +E   L   VLGVS D   SH KF +KY LNF LLAD D  + ++YGA        K    IQRST ++D EGKVA VW    V G +QH +  +  L E
Sbjct:   55 RDRCEEIQALGATVLGVSPDDTASHAKFRSKYELNFPLLADPDHKVAEAYGAWREKNMYGKISMGIQRSTFVIDAEGKVAKVWKRVKVDGHDQHVIDAIKALTE 158          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14775.3412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKZ1_9PHAE1.990e-5895.92Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
A0A6H5J6N3_9PHAE1.030e-3870.83Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
A0A7S2V4W9_9STRA2.090e-2552.63Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2V6E0_9STRA3.350e-2554.64Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0SF50_RUBBR8.030e-1945.63Peroxiredoxin n=1 Tax=Rubinisphaera brasiliensis (... [more]
A0A2E1E1Y8_9CHLR9.680e-1943.62Peroxiredoxin n=1 Tax=Dehalococcoidia bacterium Ta... [more]
A0A5Q4H613_9PLAN2.910e-1848.54Thioredoxin-dependent thiol peroxidase n=1 Tax=Pla... [more]
A0A535A4C1_9DELT5.550e-1848.54Thioredoxin peroxidase n=2 Tax=Deltaproteobacteria... [more]
A0A0D8ZVQ0_9CYAN6.160e-1850.54Alkyl hydroperoxide reductase n=4 Tax=Cyanobacteri... [more]
A0A518IX64_9BACT3.360e-1745.19Peroxiredoxin bcp n=4 Tax=Rosistilla TaxID=2795779... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14775contigE-fasciculatus_F_contig14775:1986..3223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score182.6
Seed ortholog evalue9.2e-44
Seed eggNOG ortholog2880.D8LK67
Preferred nameDOT5
KEGG koko:K03564,ko:K17275
GOsGO:0000302,GO:0000303,GO:0000305,GO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006801,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008379,GO:0009056,GO:0009636,GO:0009987,GO:0010035,GO:0016209,GO:0016491,GO:0016684,GO:0016999,GO:0017001,GO:0017144,GO:0019430,GO:0019725,GO:0033554,GO:0034599,GO:0034614,GO:0035690,GO:0042221,GO:0042493,GO:0042542,GO:0042592,GO:0042737,GO:0042743,GO:0042744,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044248,GO:0044424,GO:0044464,GO:0045454,GO:0046677,GO:0050789,GO:0050794,GO:0050896,GO:0051186,GO:0051187,GO:0051716,GO:0051920,GO:0055114,GO:0061687,GO:0061691,GO:0061692,GO:0065007,GO:0065008,GO:0070301,GO:0070887,GO:0071236,GO:0071450,GO:0071451,GO:0072593,GO:0097237,GO:0098754,GO:0098869,GO:1901700,GO:1901701,GO:1990748
EggNOG free text desc.peroxiredoxin activity
EggNOG OGsCOG1225@1,KOG0855@2759
EC1.11.1.15
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04147,ko04812
Hectar predicted targeting categoryother localisation
Exons3
Model size297
Cds size297
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14775.3412.1prot_E-fasciculatus_F_contig14775.3412.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14775 1986..3223 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927960.723056-CDS-E-fasciculatus_F_contig14775:1985..20481622927960.723056-CDS-E-fasciculatus_F_contig14775:1985..2048Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14775 1986..2048 -
1695995768.148046-CDS-E-fasciculatus_F_contig14775:1985..20481695995768.148046-CDS-E-fasciculatus_F_contig14775:1985..2048Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14775 1986..2048 -
1622927960.7394407-CDS-E-fasciculatus_F_contig14775:2494..25971622927960.7394407-CDS-E-fasciculatus_F_contig14775:2494..2597Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14775 2495..2597 -
1695995768.1690826-CDS-E-fasciculatus_F_contig14775:2494..25971695995768.1690826-CDS-E-fasciculatus_F_contig14775:2494..2597Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14775 2495..2597 -
1622927960.7516763-CDS-E-fasciculatus_F_contig14775:3092..32231622927960.7516763-CDS-E-fasciculatus_F_contig14775:3092..3223Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14775 3093..3223 -
1695995768.1800508-CDS-E-fasciculatus_F_contig14775:3092..32231695995768.1800508-CDS-E-fasciculatus_F_contig14775:3092..3223Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14775 3093..3223 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14775.3412.1

>prot_E-fasciculatus_F_contig14775.3412.1 ID=prot_E-fasciculatus_F_contig14775.3412.1|Name=mRNA_E-fasciculatus_F_contig14775.3412.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=99bp
RDLKDEYVGLDCAVLGVSADHEVSHGKFIAKYGLNFRLLADTDRSLIKSY
GASKAGDKIQRSTVLVDKEGKVAAVWNPVSGAEQHPVQVLAKLKEIMV*
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mRNA from alignment at E-fasciculatus_F_contig14775:1986..3223-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14775.3412.1 ID=mRNA_E-fasciculatus_F_contig14775.3412.1|Name=mRNA_E-fasciculatus_F_contig14775.3412.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1238bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14775:1986..3223- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCGACCTGAAGGACGAGTACGTCGGCCTGGACTGCGCGGTGCTGGGCGT GAGCGCGGACCACGAGGTCAGCCACGGCAAGTTCATCGCCAAGTACGGCC TCAACTTCAGACTGCTCGCCGACACCGACAGGTAGGTTTTATGGTAGGTG TGGTTGGGTTGTTTTGTGATTGAGTAGTGTGTTTACGAACCGGATCACCG ACGCTGACGGGGAGGCGTGGTGGGGTTGTTTGTTGAGTTTGGTGTTTTGG TTTTGTGTTCATATTACGGTGTATATATATACCTACGCATCGGCCGCAAC CAAAACCGGCTGACCAACGAAAAGGAGACGTGCAGAGACCAGCGGGTGGC ACAACAATCAAGGTCCCTGGAAAGGAGCCAGAGTCGTTCGATAGTGCGCA ACGCCGAGGAGAGATGAATCCCTCCCTTTCCGAGAGATACAAAACCCCAG CAGACTGCTAGCTTCTCTTGAATCTAATCTAAGAGACGCTTGCAGACTGC ATAATCTAGTTTTTCTTGCGCCGACGAGAACACTTGCAGACCGCACCTTC TACATTGTATTTGCTGAATTGAAAGATGCACTTTTTTATCTTGTCTGGTT GTGTTGTGGTTGTCATTTCAATGCAGGTCCCTGATCAAGTCCTACGGCGC GTCTAAGGCCGGCGACAAGATCCAGCGCAGCACCGTCCTGGTGGACAAGG AGGGGAAGGTAGCGGCCGTCTGGAACCCGGTGAGTTGGTTGCTTCTTGTA CAAAAACCATTGCTATCATCGCCCCTGTCTCGACGATTTCACTCCGTCCG CGAAACAGGTTTGGTTTTTGTGCTGTTGTCGTTTTCGTGTCATTCGTGTT GCCGATTTTTGGAGGTCGTTACAGCAGTGTTGGTTGCCGTTGTTGATGTC GTCGTCGTTTGGTTTCTTCGCGATGGCTGCAATCGTGGACTTTTGCAAGG AAAACGCCTCCTTCCATAAGTCCGTCTCGCCCTGACCGGTAAATAATTTT TGCCTCTTCTTCATACCGGAGAGGGCAACGCAGGAGCATGAACGAACGAA GCGTGCTCCCCACCTTGAAGGGATGGACGGTCAGCGGTCATGAGTGACGC TGCTAGGTTAAGACAACGAAAGCGGACACGCCCCCCCACACACGTACGTC TGAAACGACTCGAAACTTGCATCAGGTGAGTGGGGCGGAGCAGCACCCGG TTCAAGTCCTCGCAAAGCTCAAGGAGATCATGGTGTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14775:1986..3223-

>mRNA_E-fasciculatus_F_contig14775.3412.1 ID=mRNA_E-fasciculatus_F_contig14775.3412.1|Name=mRNA_E-fasciculatus_F_contig14775.3412.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=594bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14775:1986..3223- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCGACCTGAAGGACGAGTACGTCGGCCTGGACTGCGCGGTGCTGGGCGT
GAGCGCGGACCACGAGGTCAGCCACGGCAAGTTCATCGCCAAGTACGGCC
TCAACTTCAGACTGCTCGCCGACACCGACAGCGCGACCTGAAGGACGAGT
ACGTCGGCCTGGACTGCGCGGTGCTGGGCGTGAGCGCGGACCACGAGGTC
AGCCACGGCAAGTTCATCGCCAAGTACGGCCTCAACTTCAGACTGCTCGC
CGACACCGACAGGTCCCTGATCAAGTCCTACGGCGCGTCTAAGGCCGGCG
ACAAGATCCAGCGCAGCACCGTCCTGGTGGACAAGGAGGGGAAGGTAGCG
GCCGTCTGGAACCCGGTCCCTGATCAAGTCCTACGGCGCGTCTAAGGCCG
GCGACAAGATCCAGCGCAGCACCGTCCTGGTGGACAAGGAGGGGAAGGTA
GCGGCCGTCTGGAACCCGGTGAGTGGGGCGGAGCAGCACCCGGTTCAAGT
CCTCGCAAAGCTCAAGGAGATCATGGTGTAAGTGAGTGGGGCGGAGCAGC
ACCCGGTTCAAGTCCTCGCAAAGCTCAAGGAGATCATGGTGTAA
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