mRNA_E-fasciculatus_F_contig14764.3405.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14764.3405.1
Unique NamemRNA_E-fasciculatus_F_contig14764.3405.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14764.3405.1 vs. uniprot
Match: D7FUN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUN6_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 9.700e-47
Identity = 82/93 (88.17%), Postives = 85/93 (91.40%), Query Frame = 2
Query:    2 QVHRIKVHGFSDREVSIAKKNHLAEIRGEWVARDQTDSNNLCSDYVEHFLRQHPAPGIGWEAGVLAPLLETVGTGDVNEVAER*V---GWLIE 271
            +VHRIKVHGFSDREVSIAKKNHLAEIRGEWVARDQTDSNNLCSDYVEHFLR++PAPGI WEAGVLAPLLETVGTGDVNEVAER      WL E
Sbjct:  373 EVHRIKVHGFSDREVSIAKKNHLAEIRGEWVARDQTDSNNLCSDYVEHFLRRNPAPGIDWEAGVLAPLLETVGTGDVNEVAERLACLQNWLSE 465          
BLAST of mRNA_E-fasciculatus_F_contig14764.3405.1 vs. uniprot
Match: A0A830BBE2_9LAMI (Probable zinc protease pqql n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830BBE2_9LAMI)

HSP 1 Score: 75.5 bits (184), Expect = 6.120e-14
Identity = 34/83 (40.96%), Postives = 54/83 (65.06%), Query Frame = 2
Query:    2 QVHRIKVHGFSDREVSIAKKNHLAEIRGEWVARDQTDSNNLCSDYVEHFLRQHPAPGIGWEAGVLAPLLETVGTGDVNEVAER 250
            +V R+ VHGFS+RE+S+A+   ++EI   ++ RDQ  S+NL  DY++HFLR  P  GI +EA +   LL  +   +V++ +E 
Sbjct:  373 EVVRVHVHGFSEREISVARAFLMSEIESAYLERDQMQSSNLRDDYIQHFLRNEPVVGIEYEAQLHKTLLPYISASEVSKYSEN 455          
BLAST of mRNA_E-fasciculatus_F_contig14764.3405.1 vs. uniprot
Match: UPI000CECF777 (zinc protease PQQL-like n=1 Tax=Morus notabilis TaxID=981085 RepID=UPI000CECF777)

HSP 1 Score: 75.5 bits (184), Expect = 6.210e-14
Identity = 33/83 (39.76%), Postives = 54/83 (65.06%), Query Frame = 2
Query:    2 QVHRIKVHGFSDREVSIAKKNHLAEIRGEWVARDQTDSNNLCSDYVEHFLRQHPAPGIGWEAGVLAPLLETVGTGDVNEVAER 250
            ++ R+++HGFSDREVSI +   ++EI   ++ RDQ  S +L  +Y++HFLR  P  GI +EA +   LL  +   D+++ AE+
Sbjct:  371 EIARVRLHGFSDREVSIVRAQLMSEIESAYLERDQMQSTSLRDEYLQHFLRDEPVIGIEYEAQLQKTLLPQISASDLSKYAEK 453          
BLAST of mRNA_E-fasciculatus_F_contig14764.3405.1 vs. uniprot
Match: A0A022RMA6_ERYGU (Uncharacterized protein n=2 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022RMA6_ERYGU)

HSP 1 Score: 75.1 bits (183), Expect = 8.470e-14
Identity = 32/83 (38.55%), Postives = 55/83 (66.27%), Query Frame = 2
Query:    2 QVHRIKVHGFSDREVSIAKKNHLAEIRGEWVARDQTDSNNLCSDYVEHFLRQHPAPGIGWEAGVLAPLLETVGTGDVNEVAER 250
            +V R++VHGFS+RE+S+A+   ++EI   ++ RDQ  S+NL  +Y++HFLR  P  GI +EA +   +L  +   +V++ +E 
Sbjct:  373 EVARVRVHGFSEREISVARALLMSEIESAYLERDQMQSSNLRDEYIQHFLRNEPVVGIEYEAQLHKTILPHISVSEVSQYSEN 455          
BLAST of mRNA_E-fasciculatus_F_contig14764.3405.1 vs. uniprot
Match: A0A2G9GCS2_9LAMI (C-terminal processing peptidase n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9GCS2_9LAMI)

HSP 1 Score: 74.7 bits (182), Expect = 1.120e-13
Identity = 32/83 (38.55%), Postives = 53/83 (63.86%), Query Frame = 2
Query:    2 QVHRIKVHGFSDREVSIAKKNHLAEIRGEWVARDQTDSNNLCSDYVEHFLRQHPAPGIGWEAGVLAPLLETVGTGDVNEVAER 250
            +V R++ HGFS+RE+S+A+   ++EI   ++ RDQT S N   +Y++HFLR  P  GI +EA +   LL  +   +V++ +E 
Sbjct:  373 EVARVRTHGFSEREISVARSLLMSEIESAYLERDQTQSTNFRDEYIQHFLRNEPVVGIEYEAQLHKTLLPYISASEVSKYSEN 455          
BLAST of mRNA_E-fasciculatus_F_contig14764.3405.1 vs. uniprot
Match: A0A2P5A702_PARAD (Coenzyme PQQ biosynthesis protein n=5 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5A702_PARAD)

HSP 1 Score: 73.9 bits (180), Expect = 2.160e-13
Identity = 32/83 (38.55%), Postives = 55/83 (66.27%), Query Frame = 2
Query:    2 QVHRIKVHGFSDREVSIAKKNHLAEIRGEWVARDQTDSNNLCSDYVEHFLRQHPAPGIGWEAGVLAPLLETVGTGDVNEVAER 250
            +V R+++HGFS+REV+I +   ++EI   ++ RDQ  S++L  +Y++HFLR  P  GI +EA +   LL  +   D+++ AE+
Sbjct:  371 EVARVRIHGFSEREVTIVRAQLMSEIESAYLERDQMQSSSLQDEYLQHFLRNEPVIGIEYEAQLQKTLLPYISASDLSKYAEK 453          
BLAST of mRNA_E-fasciculatus_F_contig14764.3405.1 vs. uniprot
Match: UPI0010356EE7 (zinc protease PQQL-like n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI0010356EE7)

HSP 1 Score: 70.1 bits (170), Expect = 2.410e-13
Identity = 29/83 (34.94%), Postives = 53/83 (63.86%), Query Frame = 2
Query:    2 QVHRIKVHGFSDREVSIAKKNHLAEIRGEWVARDQTDSNNLCSDYVEHFLRQHPAPGIGWEAGVLAPLLETVGTGDVNEVAER 250
            +V R+++HGFS+RE+S+A+   ++EI   ++ RDQ  S +L  +Y++HFLR  P  G+ +EA +   +L  +   +V++  E 
Sbjct:   48 EVARVRLHGFSEREISVARALLMSEIESAYLERDQMQSTSLRDEYLQHFLRSEPVVGVEYEAQLQKTILPHISASEVSKYVEN 130          
BLAST of mRNA_E-fasciculatus_F_contig14764.3405.1 vs. uniprot
Match: A0A6I9U0X9_SESIN (zinc protease PQQL-like isoform X1 n=2 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9U0X9_SESIN)

HSP 1 Score: 73.2 bits (178), Expect = 4.030e-13
Identity = 32/83 (38.55%), Postives = 54/83 (65.06%), Query Frame = 2
Query:    2 QVHRIKVHGFSDREVSIAKKNHLAEIRGEWVARDQTDSNNLCSDYVEHFLRQHPAPGIGWEAGVLAPLLETVGTGDVNEVAER 250
            +V R+++HGFS+RE+SI++   ++EI   ++ RDQ  S NL  +Y++HFLR  P  GI +EA +   LL  +   +V++ +E 
Sbjct:  373 EVARVRMHGFSEREISISRALLMSEIESAYLERDQMQSTNLRDEYIQHFLRNEPVVGIEYEAQLHKTLLPYISASEVSKYSEN 455          
BLAST of mRNA_E-fasciculatus_F_contig14764.3405.1 vs. uniprot
Match: V4LG81_EUTSA (Uncharacterized protein n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=V4LG81_EUTSA)

HSP 1 Score: 72.8 bits (177), Expect = 5.390e-13
Identity = 31/82 (37.80%), Postives = 53/82 (64.63%), Query Frame = 2
Query:    5 VHRIKVHGFSDREVSIAKKNHLAEIRGEWVARDQTDSNNLCSDYVEHFLRQHPAPGIGWEAGVLAPLLETVGTGDVNEVAER 250
            V R+++HGFS+RE+S+ +   ++EI   ++ RDQT S +L  +Y++HFL   P  GI +EA +   LL  +   DV++ +E+
Sbjct:  226 VARVRLHGFSEREISVVRALMMSEIESAFLERDQTQSTSLRDEYIQHFLHNEPVIGIEYEAQLQKTLLPQISASDVSKYSEK 307          
BLAST of mRNA_E-fasciculatus_F_contig14764.3405.1 vs. uniprot
Match: A0A067KNB4_JATCU (Uncharacterized protein n=4 Tax=Jatropha curcas TaxID=180498 RepID=A0A067KNB4_JATCU)

HSP 1 Score: 72.8 bits (177), Expect = 5.500e-13
Identity = 32/82 (39.02%), Postives = 54/82 (65.85%), Query Frame = 2
Query:    5 VHRIKVHGFSDREVSIAKKNHLAEIRGEWVARDQTDSNNLCSDYVEHFLRQHPAPGIGWEAGVLAPLLETVGTGDVNEVAER 250
            V R+++HGFSDRE+SI +   +AEI   ++ RDQT S +L  ++++HFLR  P  GI +EA +   +L  +   +V++ +E+
Sbjct:  344 VARVRLHGFSDREISIVRSLLMAEIESAYLERDQTQSTSLRDEFLQHFLRNEPVVGIEYEAQLQKTILPQISALEVSQYSEK 425          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14764.3405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUN6_ECTSI9.700e-4788.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A830BBE2_9LAMI6.120e-1440.96Probable zinc protease pqql n=1 Tax=Phtheirospermu... [more]
UPI000CECF7776.210e-1439.76zinc protease PQQL-like n=1 Tax=Morus notabilis Ta... [more]
A0A022RMA6_ERYGU8.470e-1438.55Uncharacterized protein n=2 Tax=Erythranthe guttat... [more]
A0A2G9GCS2_9LAMI1.120e-1338.55C-terminal processing peptidase n=1 Tax=Handroanth... [more]
A0A2P5A702_PARAD2.160e-1338.55Coenzyme PQQ biosynthesis protein n=5 Tax=Cannabac... [more]
UPI0010356EE72.410e-1334.94zinc protease PQQL-like n=1 Tax=Camellia sinensis ... [more]
A0A6I9U0X9_SESIN4.030e-1338.55zinc protease PQQL-like isoform X1 n=2 Tax=Sesamum... [more]
V4LG81_EUTSA5.390e-1337.80Uncharacterized protein n=1 Tax=Eutrema salsugineu... [more]
A0A067KNB4_JATCU5.500e-1339.02Uncharacterized protein n=4 Tax=Jatropha curcas Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14764contigE-fasciculatus_F_contig14764:60..552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size278
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927959.8707259-CDS-E-fasciculatus_F_contig14764:59..1021622927959.8707259-CDS-E-fasciculatus_F_contig14764:59..102Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14764 60..102 +
1695995767.668933-CDS-E-fasciculatus_F_contig14764:59..1021695995767.668933-CDS-E-fasciculatus_F_contig14764:59..102Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14764 60..102 +
1622927959.8867924-CDS-E-fasciculatus_F_contig14764:319..5521622927959.8867924-CDS-E-fasciculatus_F_contig14764:319..552Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14764 320..552 +
1695995767.6771486-CDS-E-fasciculatus_F_contig14764:319..5521695995767.6771486-CDS-E-fasciculatus_F_contig14764:319..552Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14764 320..552 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14764.3405.1prot_E-fasciculatus_F_contig14764.3405.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14764 60..552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14764.3405.1

>prot_E-fasciculatus_F_contig14764.3405.1 ID=prot_E-fasciculatus_F_contig14764.3405.1|Name=mRNA_E-fasciculatus_F_contig14764.3405.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=92bp
PGPSHQGAWLQRQRGIHSEEEPSRGDKGGVGGAGSDGLEQPLQRLRGALP
QATPGPGDRLGGGGAGAAAGDGGNGGRQRSRGEVSRVVDRK*
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mRNA from alignment at E-fasciculatus_F_contig14764:60..552+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14764.3405.1 ID=mRNA_E-fasciculatus_F_contig14764.3405.1|Name=mRNA_E-fasciculatus_F_contig14764.3405.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=493bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14764:60..552+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCAGGTCCATCGCATCAAGGTGCATGGCTTCAGCGACAGAGAGGTGAGCC AAGAGCGAAAACAGTGGTTGTACAGGTAGTGCCGTCCATTTCCGCGGTAA TGATAATATATAACCCTCAACGATGCTCGACGCCAACCTTGGACCCGTTA CGTTCTGAGACGGAGGTCGGGCGCTACGGCACACAGCGCTTGGCCTGTCT CCCTTGATGTGCACATGTACAAAACAAACGCAGTGGTTTTTGTGTTGTTT TTGTCGACAGGTATCCATAGCGAAGAAGAACCATCTCGCGGAGATAAGGG GGGAGTGGGTGGCGCGGGATCAGACGGACTCGAACAACCTCTGCAGCGAC TACGTGGAGCACTTCCTCAGGCAACACCCGGCCCCGGGGATAGGCTGGGA GGCGGGGGTGCTGGCGCCGCTGCTGGAGACGGTGGGAACGGGGGACGTCA ACGAAGTCGCGGAGAGGTAAGTAGGGTGGTTGATCGAAAATGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14764:60..552+

>mRNA_E-fasciculatus_F_contig14764.3405.1 ID=mRNA_E-fasciculatus_F_contig14764.3405.1|Name=mRNA_E-fasciculatus_F_contig14764.3405.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=552bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14764:60..552+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCAGGTCCATCGCATCAAGGTGCATGGCTTCAGCGACAGAGAGCCAGGTC
CATCGCATCAAGGTGCATGGCTTCAGCGACAGAGAGGTATCCATAGCGAA
GAAGAACCATCTCGCGGAGATAAGGGGGGAGTGGGTGGCGCGGGATCAGA
CGGACTCGAACAACCTCTGCAGCGACTACGTGGAGCACTTCCTCAGGCAA
CACCCGGCCCCGGGGATAGGCTGGGAGGCGGGGGTGCTGGCGCCGCTGCT
GGAGACGGTGGGAACGGGGGACGTCAACGAAGTCGCGGAGAGGTAAGTAG
GGTGGTTGATCGAAAATGAGTATCCATAGCGAAGAAGAACCATCTCGCGG
AGATAAGGGGGGAGTGGGTGGCGCGGGATCAGACGGACTCGAACAACCTC
TGCAGCGACTACGTGGAGCACTTCCTCAGGCAACACCCGGCCCCGGGGAT
AGGCTGGGAGGCGGGGGTGCTGGCGCCGCTGCTGGAGACGGTGGGAACGG
GGGACGTCAACGAAGTCGCGGAGAGGTAAGTAGGGTGGTTGATCGAAAAT
GA
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