mRNA_E-fasciculatus_F_contig1476.3401.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1476.3401.1
Unique NamemRNA_E-fasciculatus_F_contig1476.3401.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1476.3401.1 vs. uniprot
Match: D8LU07_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU07_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 2.840e-43
Identity = 72/91 (79.12%), Postives = 78/91 (85.71%), Query Frame = 3
Query:   21 MQENVFLGDFFGCVGFLPITTKRYVRETMVKIMTSPSSLQQSAVVGADCDEEGHLDAIARGVDWSQASERNQLPMDPSTCTFWCAIALGAL 293
            M+EN FL DFFGCVGFLP+TTK ++RETMVKIM SP+SLQQSAV  ADCD+E   DAIARG  W QASERNQLP DPSTCTFWCAIALGAL
Sbjct:    1 MEENAFLSDFFGCVGFLPLTTKSHIRETMVKIMRSPASLQQSAVE-ADCDDERSYDAIARGAHWIQASERNQLPRDPSTCTFWCAIALGAL 90          
BLAST of mRNA_E-fasciculatus_F_contig1476.3401.1 vs. uniprot
Match: D8LCV1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV1_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 1.950e-37
Identity = 68/98 (69.39%), Postives = 76/98 (77.55%), Query Frame = 3
Query:    3 ATGLVGMQENVFLGDFFGCVGFLPITTKRYVRETMVKIMTSPSSLQQSAVVGADCDEEGH-LDAIARGVDWSQASERNQLPMDPSTCTFWCAIALGAL 293
            ATGLVGMQEN FL DFFGCVGFLP+TT  ++RETMV IM   +S QQS V G DCDE GH  +A+A G D S+ S RNQ PMDPS CTFWCA+ALGAL
Sbjct:   18 ATGLVGMQENAFLSDFFGCVGFLPLTTPSHIRETMVTIMLPRASSQQS-VFGDDCDEGGHYFEAVAPGGDLSKTSARNQFPMDPSACTFWCAVALGAL 114          
BLAST of mRNA_E-fasciculatus_F_contig1476.3401.1 vs. uniprot
Match: A0A6H5JYW4_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW4_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 5.170e-36
Identity = 67/97 (69.07%), Postives = 78/97 (80.41%), Query Frame = 3
Query:    3 ATGLVGMQENVFLGDFFGCVGFLPITTKRYVRETMVKIMTSPSSLQQSAVVGADCDEEGHLDAIARGVDWSQASERNQLPMDPSTCTFWCAIALGAL 293
            ATGLVGMQEN FL DFFGCVGF+P+T+  ++RETMV+IM SP+ LQQSA+ GA C E G    + R   W++ASERNQLPMD STCTFWCAIALGAL
Sbjct:  118 ATGLVGMQENAFLSDFFGCVGFVPLTSHSHIRETMVRIMASPAPLQQSAIGGA-CSEVG---TMVRAPCWNEASERNQLPMDASTCTFWCAIALGAL 210          
BLAST of mRNA_E-fasciculatus_F_contig1476.3401.1 vs. uniprot
Match: D8LU09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU09_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 2.280e-35
Identity = 65/97 (67.01%), Postives = 78/97 (80.41%), Query Frame = 3
Query:    3 ATGLVGMQENVFLGDFFGCVGFLPITTKRYVRETMVKIMTSPSSLQQSAVVGADCDEEGHLDAIARGVDWSQASERNQLPMDPSTCTFWCAIALGAL 293
            ATGLVGMQEN FL DFFGCVGF+P+T+  ++RETMVKIM SP+ LQQSA+ GA     G + ++ R   W++ASE+ QLPMDPSTCTFWCAIALGAL
Sbjct:   14 ATGLVGMQENAFLSDFFGCVGFVPLTSHSHIRETMVKIMASPAPLQQSAIGGAF----GGVGSMVRARCWNKASEKPQLPMDPSTCTFWCAIALGAL 106          
BLAST of mRNA_E-fasciculatus_F_contig1476.3401.1 vs. uniprot
Match: D8LU13_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU13_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 8.400e-35
Identity = 64/97 (65.98%), Postives = 76/97 (78.35%), Query Frame = 3
Query:    3 ATGLVGMQENVFLGDFFGCVGFLPITTKRYVRETMVKIMTSPSSLQQSAVVGADCDEEGHLDAIARGVDWSQASERNQLPMDPSTCTFWCAIALGAL 293
            A GLVGMQE+ FL DFFGCVGFLP+TT+  +RE MV+IM +P++LQ+ AV G  CDEE   DAIARG D   ASE +Q PM+P +CTFWCAIALGAL
Sbjct:  113 AVGLVGMQESAFLSDFFGCVGFLPLTTRSTIREAMVQIMATPATLQRPAV-GGGCDEEALFDAIARGEDLINASEGHQHPMNPRSCTFWCAIALGAL 208          
BLAST of mRNA_E-fasciculatus_F_contig1476.3401.1 vs. uniprot
Match: D8LCV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV4_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 2.710e-34
Identity = 64/98 (65.31%), Postives = 74/98 (75.51%), Query Frame = 3
Query:    3 ATGLVGMQENVFLGDFFGCVGFLPITTKRYVRETMVKIMTSPSSLQQSAVVGADCDEEGH-LDAIARGVDWSQASERNQLPMDPSTCTFWCAIALGAL 293
            ATGLV MQEN FL DFFGC+GFLP+TT   +RETMVKIM  P+S QQS V G   D+ GH  +A+A G D S+ S  +QLPMDPS CTFWCA+ALGAL
Sbjct:   14 ATGLVEMQENTFLSDFFGCIGFLPLTTPSQIRETMVKIMVPPASSQQS-VFGDGSDKRGHYFEAVAPGGDLSKISAGSQLPMDPSACTFWCAVALGAL 110          
BLAST of mRNA_E-fasciculatus_F_contig1476.3401.1 vs. uniprot
Match: D8LU05_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU05_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 4.130e-34
Identity = 67/91 (73.63%), Postives = 74/91 (81.32%), Query Frame = 3
Query:   21 MQENVFLGDFFGCVGFLPITTKRYVRETMVKIMTSPSSLQQSAVVGADCDEEGHLDAIARGVDWSQASERNQLPMDPSTCTFWCAIALGAL 293
            M+EN FL DFFGCVGFLP+TT  ++RETMVKIMT PSSLQQSAV GAD   E  +D  A G +  +ASERNQLPMDPSTCTFWCAIALGAL
Sbjct:    1 MEENAFLSDFFGCVGFLPLTTTSHIRETMVKIMTPPSSLQQSAV-GAD---ERSVDTNAPGANLIKASERNQLPMDPSTCTFWCAIALGAL 87          
BLAST of mRNA_E-fasciculatus_F_contig1476.3401.1 vs. uniprot
Match: D7FZI7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI7_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 1.360e-32
Identity = 57/91 (62.64%), Postives = 70/91 (76.92%), Query Frame = 3
Query:   21 MQENVFLGDFFGCVGFLPITTKRYVRETMVKIMTSPSSLQQSAVVGADCDEEGHLDAIARGVDWSQASERNQLPMDPSTCTFWCAIALGAL 293
            MQE+ FL DFFGCVGF P+ T+  +R +MVKIMT+     QS+ VG D  E+G  DAI RG DWS+ASE +Q+PM+PS+CTFWCAIALGAL
Sbjct:    1 MQESAFLSDFFGCVGFFPLATQSEIRASMVKIMTT----LQSSAVGGDFGEQGRFDAIVRGADWSKASEGHQIPMNPSSCTFWCAIALGAL 87          
BLAST of mRNA_E-fasciculatus_F_contig1476.3401.1 vs. uniprot
Match: D8LCW5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW5_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 3.980e-32
Identity = 61/92 (66.30%), Postives = 71/92 (77.17%), Query Frame = 3
Query:   21 MQENVFLGDFFGCVGFLPITTKRYVRETMVKIMTSPSSLQQSAVVGADCDEEGH-LDAIARGVDWSQASERNQLPMDPSTCTFWCAIALGAL 293
            MQEN FL DFFGC GFLP+ T  ++RETMVKIM  P+S QQ  V+G DCDE GH  +A+ARG D S+ S  N+LPMDPS CTFWCA+ALGAL
Sbjct:    1 MQENAFLSDFFGCNGFLPLATPSHIRETMVKIMLPPASSQQP-VLGDDCDEGGHYFEAVARGGDLSKTSAGNRLPMDPSACTFWCAVALGAL 91          
BLAST of mRNA_E-fasciculatus_F_contig1476.3401.1 vs. uniprot
Match: D8LU16_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU16_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 5.660e-31
Identity = 60/97 (61.86%), Postives = 72/97 (74.23%), Query Frame = 3
Query:    3 ATGLVGMQENVFLGDFFGCVGFLPITTKRYVRETMVKIMTSPSSLQQSAVVGADCDEEGHLDAIARGVDWSQASERNQLPMDPSTCTFWCAIALGAL 293
            ATGLVGMQEN FL DFFGCVGFLP+TT+ ++RETMV IM SP+  Q  + VG D    G  D+IA GV+WS+AS  +QLPM+PSTCTFW    +G L
Sbjct:  117 ATGLVGMQENAFLSDFFGCVGFLPLTTQSHIRETMVNIMVSPAIRQ--SFVGGDFGAGGPFDSIAGGVEWSKASGGHQLPMNPSTCTFWAWAIMGYL 211          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1476.3401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU07_ECTSI2.840e-4379.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCV1_ECTSI1.950e-3769.39Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JYW4_9PHAE5.170e-3669.07Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU09_ECTSI2.280e-3567.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU13_ECTSI8.400e-3565.98Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LCV4_ECTSI2.710e-3465.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU05_ECTSI4.130e-3473.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZI7_ECTSI1.360e-3262.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCW5_ECTSI3.980e-3266.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU16_ECTSI5.660e-3161.86Zn(2)-C6 fungal-type domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1476contigE-fasciculatus_F_contig1476:15485..15978 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size293
Cds size273
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1476.3401.1prot_E-fasciculatus_F_contig1476.3401.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1476 15505..15978 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927959.4994855-UTR-E-fasciculatus_F_contig1476:15484..155041622927959.4994855-UTR-E-fasciculatus_F_contig1476:15484..15504Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1476 15485..15504 +
1695995767.5459528-UTR-E-fasciculatus_F_contig1476:15484..155041695995767.5459528-UTR-E-fasciculatus_F_contig1476:15484..15504Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1476 15485..15504 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927959.5148892-CDS-E-fasciculatus_F_contig1476:15504..155721622927959.5148892-CDS-E-fasciculatus_F_contig1476:15504..15572Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1476 15505..15572 +
1695995767.5558817-CDS-E-fasciculatus_F_contig1476:15504..155721695995767.5558817-CDS-E-fasciculatus_F_contig1476:15504..15572Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1476 15505..15572 +
1622927959.532193-CDS-E-fasciculatus_F_contig1476:15773..159781622927959.532193-CDS-E-fasciculatus_F_contig1476:15773..15978Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1476 15774..15978 +
1695995767.5657666-CDS-E-fasciculatus_F_contig1476:15773..159781695995767.5657666-CDS-E-fasciculatus_F_contig1476:15773..15978Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1476 15774..15978 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1476.3401.1

>prot_E-fasciculatus_F_contig1476.3401.1 ID=prot_E-fasciculatus_F_contig1476.3401.1|Name=mRNA_E-fasciculatus_F_contig1476.3401.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=91bp
MQENVFLGDFFGCVGFLPITTKRYVRETMVKIMTSPSSLQQSAVVGADCD
EEGHLDAIARGVDWSQASERNQLPMDPSTCTFWCAIALGAL
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mRNA from alignment at E-fasciculatus_F_contig1476:15485..15978+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1476.3401.1 ID=mRNA_E-fasciculatus_F_contig1476.3401.1|Name=mRNA_E-fasciculatus_F_contig1476.3401.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=494bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1476:15485..15978+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGCGACCGGTCTCGTTGGAATGCAGGAGAACGTCTTCCTGGGCGACTTC TTCGGTTGCGTTGGTTTTCTTCCGATAACTACCAAACGGTATGGGTACGA TTCGCGCACATTGGCGGGGAACGCTGCTTGGCTACGTGCTGTTACTCGTG CGTAAAGTGGTTGTTGTCGCTAAACGTGCATGCAAACAGCACAGCGTTGT CGCTCGGGTGGTGATGGTGGTTTGTCCCGCCTGCCTCACACGATAACCCG ACACGTGGCACCTGTTCGATGACTTTGCTGTTTTAACAGTTACGTTCGCG AGACGATGGTGAAGATCATGACATCCCCCTCCTCTCTACAGCAGTCAGCG GTGGTTGGGGCCGACTGTGACGAGGAAGGACACCTCGATGCAATCGCACG AGGGGTGGATTGGAGTCAGGCCTCGGAACGAAACCAGCTTCCTATGGACC CGTCGACGTGCACGTTCTGGTGTGCAATTGCTCTGGGGGCGCTC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1476:15485..15978+

>mRNA_E-fasciculatus_F_contig1476.3401.1 ID=mRNA_E-fasciculatus_F_contig1476.3401.1|Name=mRNA_E-fasciculatus_F_contig1476.3401.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=546bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1476:15485..15978+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCAGGAGAACGTCTTCCTGGGCGACTTCTTCGGTTGCGTTGGTTTTCT
TCCGATAACTACCAAACGATGCAGGAGAACGTCTTCCTGGGCGACTTCTT
CGGTTGCGTTGGTTTTCTTCCGATAACTACCAAACGTTACGTTCGCGAGA
CGATGGTGAAGATCATGACATCCCCCTCCTCTCTACAGCAGTCAGCGGTG
GTTGGGGCCGACTGTGACGAGGAAGGACACCTCGATGCAATCGCACGAGG
GGTGGATTGGAGTCAGGCCTCGGAACGAAACCAGCTTCCTATGGACCCGT
CGACGTGCACGTTCTGGTGTGCAATTGCTCTGGGGGCGCTCTTACGTTCG
CGAGACGATGGTGAAGATCATGACATCCCCCTCCTCTCTACAGCAGTCAG
CGGTGGTTGGGGCCGACTGTGACGAGGAAGGACACCTCGATGCAATCGCA
CGAGGGGTGGATTGGAGTCAGGCCTCGGAACGAAACCAGCTTCCTATGGA
CCCGTCGACGTGCACGTTCTGGTGTGCAATTGCTCTGGGGGCGCTC
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