mRNA_E-fasciculatus_F_contig1473.3385.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1473.3385.1
Unique NamemRNA_E-fasciculatus_F_contig1473.3385.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1473.3385.1 vs. uniprot
Match: D7FRE2_ECTSI (Checkpoint protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE2_ECTSI)

HSP 1 Score: 258 bits (658), Expect = 1.240e-84
Identity = 131/134 (97.76%), Postives = 134/134 (100.00%), Query Frame = 1
Query:   19 AGVIGAIEKIGTACVVHLTETRVHLSVQESGSEGVDVYAELIQEMLFHEYRIESRAGNAILFEANASLLLQALNSGKTSPTCQIKLAKRAGQPCLSIETRALEIEVVHDIPVKVMPANEAEYYLPPRVHSPQVR 420
            AGVIGAIEKIGTACVVHLTETRVHLSVQESGSEGVDVYAELIQ+MLFHEYRIESRAGNAILFEANASLLLQALNSGKTSPTCQIKLAKRAGQPCLSIETRALEIEVVHDIPVKVMPANEAEYYLPP+VHSPQV+
Sbjct:   16 AGVIGAIEKIGTACVVHLTETRVHLSVQESGSEGVDVYAELIQDMLFHEYRIESRAGNAILFEANASLLLQALNSGKTSPTCQIKLAKRAGQPCLSIETRALEIEVVHDIPVKVMPANEAEYYLPPKVHSPQVQ 149          
BLAST of mRNA_E-fasciculatus_F_contig1473.3385.1 vs. uniprot
Match: A0A7S3YAY1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YAY1_HETAK)

HSP 1 Score: 132 bits (333), Expect = 3.370e-36
Identity = 61/134 (45.52%), Postives = 97/134 (72.39%), Query Frame = 1
Query:   19 AGVIGAIEKIGTACVVHLTETRVHLSVQESGSEGVDVYAELIQEMLFHEYRIESRAGNAILFEANASLLLQALNSGKTSPTCQIKLAKRAGQPCLSIETRALEIEVVHDIPVKVMPANEAEYYLPPRVHSPQVR 420
            +G+I  +EK+   CV++LTE+ + +S++ES  + + V++E+ QE LF +YRIES + N IL E   + L +AL SG+ +P CQ+KLAKR G+PCL++ETRALE+++ HD+PVK++   +  ++L P V  PQV+
Sbjct:   17 SGLISILEKVSQVCVIYLTESSMRISIKES-QDDIQVFSEISQERLFTDYRIESLSNNCILLEVGTANLGRALASGRRAPACQLKLAKRGGRPCLAVETRALEVDIAHDLPVKLLRPGDVRFHLAPEVPRPQVQ 149          
BLAST of mRNA_E-fasciculatus_F_contig1473.3385.1 vs. uniprot
Match: A0A7S2SUZ2_9STRA (Checkpoint protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUZ2_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.150e-34
Identity = 67/135 (49.63%), Postives = 93/135 (68.89%), Query Frame = 1
Query:   22 GVIGAIEKIGTACVVHLTETRVHLSVQESGSEGVDV--YAELIQEMLFHEYRIESRAGNAILFEANASLLLQALNSGKTSPTCQIKLAKRAGQPCLSIETRALEIEVVHDIPVKVMPANEAEYYLPPRVHSPQVR 420
            GV   +EKIG   VVHL++T + L ++    +G DV  ++ L Q+ LFH++RIES++GN IL +     LL AL+S + +P CQ+KL KR GQ  L +ETRALE++V+HDIPV VM A+E +YY PP V  PQV+
Sbjct:   60 GVAATLEKIGPLGVVHLSDTSIQLCIRNDSGQGDDVLAFSALEQKELFHDWRIESQSGNCILLQLTLQNLLDALHSARNAPQCQLKLTKRNGQAALCLETRALEVDVIHDIPVTVMRASEYQYYCPPDVPQPQVQ 194          
BLAST of mRNA_E-fasciculatus_F_contig1473.3385.1 vs. uniprot
Match: W7TDG5_9STRA (Checkpoint protein hus1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TDG5_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.150e-32
Identity = 58/133 (43.61%), Postives = 94/133 (70.68%), Query Frame = 1
Query:   22 GVIGAIEKIGTACVVHLTETRVHLSVQESGSEGVDVYAELIQEMLFHEYRIESRAGNAILFEANASLLLQALNSGKTSPTCQIKLAKRAGQPCLSIETRALEIEVVHDIPVKVMPANEAEYYLPPRVHSPQVR 420
            GV    E+ G +C+++L+E  +  +  + GS+ V  ++E+ QE +F EYRI S A N+ILFE   S L++A +S KT+   ++KLAKRAGQPC+ +E RAL++E++H++P++VM A + +YY+PP V  P+V+
Sbjct:   17 GVAQCFERFGPSCLIYLSERSIRFASPKLGSDEVRAFSEIQQEKVFSEYRIASLANNSILFEIGLSNLIKAFSSAKTAHFVRMKLAKRAGQPCICLEARALDMELLHEVPIRVMRAADIQYYMPPDVAMPRVQ 149          
BLAST of mRNA_E-fasciculatus_F_contig1473.3385.1 vs. uniprot
Match: A0A4D9CSQ4_9STRA (Checkpoint protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSQ4_9STRA)

HSP 1 Score: 124 bits (312), Expect = 2.260e-32
Identity = 59/133 (44.36%), Postives = 94/133 (70.68%), Query Frame = 1
Query:   22 GVIGAIEKIGTACVVHLTETRVHLSVQESGSEGVDVYAELIQEMLFHEYRIESRAGNAILFEANASLLLQALNSGKTSPTCQIKLAKRAGQPCLSIETRALEIEVVHDIPVKVMPANEAEYYLPPRVHSPQVR 420
            GV    E+ G +C+++L+E  +  +  + GS+ V  ++E+ QE +F EYRI S A N+ILFE   S L++A +S KT+   +IKLAKRAGQPC+ +E RAL++E++H++P++VM A + +YY+PP V  P+V+
Sbjct:   17 GVAQCFERFGPSCLIYLSERSIRFASPKLGSDEVRAFSEIQQEKVFSEYRIASLANNSILFEIGLSNLIKAFSSAKTAHFVRIKLAKRAGQPCICLEARALDMELLHEVPIRVMRAADIQYYMPPDVAMPRVQ 149          
BLAST of mRNA_E-fasciculatus_F_contig1473.3385.1 vs. uniprot
Match: A0A7S1TZY9_9STRA (Checkpoint protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZY9_9STRA)

HSP 1 Score: 117 bits (292), Expect = 2.470e-29
Identity = 63/137 (45.99%), Postives = 87/137 (63.50%), Query Frame = 1
Query:   22 GVIGAIEKIGTAC----VVHLTETRVHLSVQESGSEGVDVYAELIQEMLFHEYRIESRAGNAILFEANASLLLQALNSGKTSPTCQIKLAKRAGQPCLSIETRALEIEVVHDIPVKVMPANEAEYYLPPRVHSPQVR 420
            GVI  +EK         ++HL+     L++  + +E   V+AEL  + LF EYRIES++ + IL EA  + L +A  SG+ +P C +KL KR GQPCL +ETRALE++V HDIPVKV+ A E E Y PP V +P V+
Sbjct:   17 GVIMCLEKATAGATPTVLLHLSPGGAKLALPTASTEEPQVFAELAADKLFAEYRIESQSDDCILLEAGLANLARAFRSGRAAPLCLLKLTKRRGQPCLCLETRALEVDVTHDIPVKVLKAAEIEAYAPPEVPAPSVQ 153          
BLAST of mRNA_E-fasciculatus_F_contig1473.3385.1 vs. uniprot
Match: A0A7R9U1B3_9STRA (Checkpoint protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1B3_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 3.370e-18
Identity = 39/60 (65.00%), Postives = 48/60 (80.00%), Query Frame = 1
Query:  241 SGKTSPTCQIKLAKRAGQPCLSIETRALEIEVVHDIPVKVMPANEAEYYLPPRVHSPQVR 420
            SG+T+P CQ+KL KR GQPCL +ETRALE++V HDIPVKV+ A+E E Y PP V SP V+
Sbjct:    2 SGRTAPLCQLKLTKRGGQPCLCLETRALEVDVTHDIPVKVLKASEIEAYAPPEVPSPTVQ 61          
BLAST of mRNA_E-fasciculatus_F_contig1473.3385.1 vs. uniprot
Match: M4BAP0_HYAAE (Checkpoint protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BAP0_HYAAE)

HSP 1 Score: 77.0 bits (188), Expect = 3.810e-14
Identity = 42/122 (34.43%), Postives = 71/122 (58.20%), Query Frame = 1
Query:   52 TACVVHLTETRVHLSVQESGSEGVDVYAELIQEMLFHEYRIESRAGNAILFEANASLLLQALNSGKTSPTCQIKLAKRAGQPCLSIETRALEIEVVHDIPVKVMPANEAEYYLPPRVHSPQV 417
            T CV +LT   + ++++  G+E +  ++ L    LFH+  ++S+A N I F  +   L QAL+SGK +    ++L KR G   L +  RA++I++V  IP+KV+  +  E Y  P V +PQ+
Sbjct:   33 TNCVFNLTPQTLSIALKSGGAEELQSFSRLPITRLFHDVVVQSQAENHIGFLCDVRHLQQALSSGKDASAVMLRLLKRDGSNFLCLRMRAVDIDIVQSIPIKVVAMSTLEQYREPSVPAPQI 154          
BLAST of mRNA_E-fasciculatus_F_contig1473.3385.1 vs. uniprot
Match: A0A433PQA6_9FUNG (Hus1-like protein-domain-containing protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PQA6_9FUNG)

HSP 1 Score: 64.7 bits (156), Expect = 2.660e-10
Identity = 42/124 (33.87%), Postives = 60/124 (48.39%), Query Frame = 1
Query:   19 AGVIGAIEKIGTACVVHLTETRVHLSVQESGSEGVDVYAELIQEMLFHEYRIESRAGNAILFEANASLLLQALNSGKTSPTCQIKLAKRAGQPCLSI-----ETRALEIEVVHDIPVKVMPANE 375
            AGV  ++E++   C++ LT  RVH  V      G        Q  +F  Y I+S A N I  E     LL+AL S + +    +KL K+ G P LS+           +E+V DIPVKV+  N+
Sbjct:   25 AGVAQSVERLAKMCLLKLTRERVHFIVVADAEGGA-------QCSIFTNYHIDSAAENEIFLEFQVDYLLRALRSAQNAVDVMMKLTKKNGVPLLSLIMSHSSRGGKRLELVQDIPVKVLSPNQ 141          
BLAST of mRNA_E-fasciculatus_F_contig1473.3385.1 vs. uniprot
Match: A0A2C9L6C6_BIOGL (Checkpoint protein n=2 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9L6C6_BIOGL)

HSP 1 Score: 63.9 bits (154), Expect = 1.280e-9
Identity = 42/134 (31.34%), Postives = 68/134 (50.75%), Query Frame = 1
Query:   25 VIGAIEKIGTACVVHLTETRVHLSVQES-GSEGVDVYAELIQEMLFHEYRIE--SRAGNAILFEANASLLLQALNSGKTSPTCQIKLAKRAGQPCLSIETRAL-----EIEVVHDIPVKVMPANEAEYYLPPRV 402
            ++G I K+   C++ +TE +V   + E  G  G  ++ EL Q   F EY ++  S   N I  E    L+L+AL +  ++   ++KL K+   PCL++E         + +VVHDIPV V+P      Y  P +
Sbjct:   19 IVGTISKLVKTCIMRITEDKVFFILSERIGDGGAQMWCELDQSHFFDEYAMDGVSAEANEIYLEVMPDLMLKALKTAHSAKWIKLKLTKK-NTPCLTMEIDLPTGGPHQRQVVHDIPVNVVPRKHWPDYTEPEM 151          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1473.3385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7FRE2_ECTSI1.240e-8497.76Checkpoint protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A7S3YAY1_HETAK3.370e-3645.52Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2SUZ2_9STRA1.150e-3449.63Checkpoint protein n=1 Tax=Rhizochromulina marina ... [more]
W7TDG5_9STRA1.150e-3243.61Checkpoint protein hus1 n=1 Tax=Nannochloropsis ga... [more]
A0A4D9CSQ4_9STRA2.260e-3244.36Checkpoint protein n=1 Tax=Nannochloropsis salina ... [more]
A0A7S1TZY9_9STRA2.470e-2945.99Checkpoint protein n=2 Tax=Phaeomonas parva TaxID=... [more]
A0A7R9U1B3_9STRA3.370e-1865.00Checkpoint protein n=1 Tax=Pinguiococcus pyrenoido... [more]
M4BAP0_HYAAE3.810e-1434.43Checkpoint protein n=1 Tax=Hyaloperonospora arabid... [more]
A0A433PQA6_9FUNG2.660e-1033.87Hus1-like protein-domain-containing protein n=1 Ta... [more]
A0A2C9L6C6_BIOGL1.280e-931.34Checkpoint protein n=2 Tax=Biomphalaria glabrata T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1473contigE-fasciculatus_F_contig1473:1013..2717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score260.4
Seed ortholog evalue4.9e-67
Seed eggNOG ortholog2880.D7FRE2
Preferred nameHUS1
KEGG koko:K02870,ko:K10903,ko:K10996
KEGG Pathwayko03010,ko04218,map03010,map04218
KEGG ModuleM00177
GOsGO:0000003,GO:0000075,GO:0000076,GO:0000077,GO:0000228,GO:0000278,GO:0000723,GO:0000724,GO:0000725,GO:0000785,GO:0000792,GO:0000793,GO:0000794,GO:0001932,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006275,GO:0006281,GO:0006289,GO:0006302,GO:0006310,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0006997,GO:0007049,GO:0007093,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007293,GO:0007338,GO:0007346,GO:0008150,GO:0008152,GO:0008156,GO:0009314,GO:0009411,GO:0009416,GO:0009566,GO:0009628,GO:0009653,GO:0009790,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010212,GO:0010389,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010639,GO:0010948,GO:0010972,GO:0016043,GO:0016310,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019953,GO:0022402,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0030154,GO:0030717,GO:0030720,GO:0030896,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031570,GO:0031573,GO:0031974,GO:0031981,GO:0032200,GO:0032268,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033043,GO:0033313,GO:0033314,GO:0033554,GO:0034641,GO:0035038,GO:0035861,GO:0036211,GO:0040020,GO:0042325,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0044773,GO:0044774,GO:0044778,GO:0044818,GO:0045786,GO:0045835,GO:0045930,GO:0045934,GO:0046483,GO:0048468,GO:0048477,GO:0048519,GO:0048523,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051246,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051598,GO:0051674,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0060249,GO:0060255,GO:0061982,GO:0061988,GO:0065007,GO:0065008,GO:0070013,GO:0070192,GO:0070193,GO:0070194,GO:0070925,GO:0071214,GO:0071478,GO:0071479,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090734,GO:0104004,GO:1901360,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903046,GO:1903047,GO:1990421,GO:2000112,GO:2000113,GO:2000241,GO:2000242
EggNOG free text desc.meiotic DNA integrity checkpoint
EggNOG OGsKOG3999@1,KOG3999@2759
Ec32 ortholog descriptionCell cycle checkpoint, Hus1
Ec32 orthologEc-21_002610.2
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03400
Hectar predicted targeting categoryother localisation
Exons3
Model size420
Cds size420
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1473.3385.1prot_E-fasciculatus_F_contig1473.3385.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1473 1013..2717 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927957.550174-CDS-E-fasciculatus_F_contig1473:1012..11141622927957.550174-CDS-E-fasciculatus_F_contig1473:1012..1114Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1473 1013..1114 -
1695995766.6827252-CDS-E-fasciculatus_F_contig1473:1012..11141695995766.6827252-CDS-E-fasciculatus_F_contig1473:1012..1114Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1473 1013..1114 -
1622927957.5644453-CDS-E-fasciculatus_F_contig1473:1587..17581622927957.5644453-CDS-E-fasciculatus_F_contig1473:1587..1758Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1473 1588..1758 -
1695995766.6938303-CDS-E-fasciculatus_F_contig1473:1587..17581695995766.6938303-CDS-E-fasciculatus_F_contig1473:1587..1758Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1473 1588..1758 -
1622927957.5775194-CDS-E-fasciculatus_F_contig1473:2570..27171622927957.5775194-CDS-E-fasciculatus_F_contig1473:2570..2717Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1473 2571..2717 -
1695995766.7032883-CDS-E-fasciculatus_F_contig1473:2570..27171695995766.7032883-CDS-E-fasciculatus_F_contig1473:2570..2717Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1473 2571..2717 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1473.3385.1

>prot_E-fasciculatus_F_contig1473.3385.1 ID=prot_E-fasciculatus_F_contig1473.3385.1|Name=mRNA_E-fasciculatus_F_contig1473.3385.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=140bp
MGHFRPAGVIGAIEKIGTACVVHLTETRVHLSVQESGSEGVDVYAELIQE
MLFHEYRIESRAGNAILFEANASLLLQALNSGKTSPTCQIKLAKRAGQPC
LSIETRALEIEVVHDIPVKVMPANEAEYYLPPRVHSPQVR
back to top

mRNA from alignment at E-fasciculatus_F_contig1473:1013..2717-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1473.3385.1 ID=mRNA_E-fasciculatus_F_contig1473.3385.1|Name=mRNA_E-fasciculatus_F_contig1473.3385.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1705bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1473:1013..2717- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGACATTTCCGTCCGGCAGGGGTGATAGGGGCCATCGAGAAGATAGG GACCGCGTGCGTGGTGCACCTGACGGAGACGAGAGTACACCTCTCAGTGC AGGAGAGCGGCTCGGAAGGGGTAGACGTCTACGCGGAGCTGATTCAGGTG GGTGGGTTGTCGTCGTGGTGGTACAATACCTGTTGTTGATGGTATAGTTT TCGTGACTTACACCAAAGCAAGTTGTCATCGATGTGTCCACGTTTTCGTG TGCATTCCGCCCTTTGCCCCAACCGGCTAGTGGAGACTTGGTGTGGTACA TTGCCGGTTTTATTAGGCCGCTGACTGTAAGTAGCTTGCTCTGATTTCTC AGGGATGGGCTTGGGGTGGTGTCGTCGGCTGATCTCGGTCGGTTAGCGTT TTGCATGCTTTCGCTGTGGGCTGTGTGACGTGCCCACCTGTGACTGACCC GCTGTTTTTTGCGTGATGGGTCGTCGCTCGAGTTGGCTACTGTAGGTGTG TTCAGCTGGTCGGTAAGGTGTAGATCATTATTTTGTTCTATTATTGCGTT CCGTCCGCCGCCATCGTTGCTTCGCGTTTTTTTTTTGTGCCTGTACGTGC GTGCGCTTTGCTGTCAGGTGGCATGTTTAGGAACTTCCTTGTCTCTGGAT CTTGAGCGTCATTTCCTTTGTCGATCCCTTGTGGACTGCTGGTGTACACA TCGCGCACGTCCGTGATGATAGTTTGGGAGGAAGGAAGTGAAGCTCCGCA AGTAATGCACCACCAGGACCAGAGCAAGCAACGGCAGGCACCAACCCCTC TCGCCCACCCCGTCCCTGAGCCCCGCGTCTTTCATCGGGGTGTGGTCTGT TTGCCTTCGCTGTACATCTGCCTTCGCTGTACATCTGGGTTGCAACGCCC CTGTGCATGTTCGTTCGTTGCGTTCTAATTTCATGTGCGCATGAAACGTT CACTTGCAGGAGATGCTGTTCCACGAGTACCGCATCGAGAGCAGGGCGGG CAACGCGATCCTCTTCGAGGCGAACGCTTCTCTCCTGCTGCAGGCCCTCA ACTCCGGCAAGACATCGCCGACCTGCCAGATCAAGCTCGCGAAGAGGGCC GGGCAGCCGTGCCTTTCGATAGAGACGAGGGTGAGAGAGCAAACTAGAGA GAACTTATACAAGGTAAAGAGAGAGGCGGGGAGGGTCGTGCAGGTTTGGG TGGGCGTGCGAGTGTTGTTTTGCGAACGGACTGAGCAGATATTGGGCCTT TCCAATCCATCTAGGACGAAAAGGCTGTAACAGACAGAACCTGTATGACG CCATGCGTTTTTTGTTGCGTGGGTCGGTGCGTTCCGTTCTGTCGATTCCA CACTCTCCGACCGTGTGGCGCACGGCCGAACGCCATAACCTGTATCGCTT TTCCCGTTGGCCCATGTGGTGTGTTTTGCCCTGCTGCTCGTCGGCAGTAA ATGTGTTTCGTGCTGTGACCGGAAGGCTTGTCCTAAACCCTCTCACCTCC CGCCCCTTTCTTTGTCCGTCTGCGTGCTATCTATAATACGTGTTTTGTGT CGCGTGGTGCAACTTTTGATTTTGGTGTGCGTTCAAACGTGTGAGGGGCG CAGGCGTTAGAGATCGAAGTCGTCCACGATATTCCCGTGAAGGTCATGCC GGCAAATGAGGCGGAGTACTACCTGCCGCCGAGAGTCCATTCGCCGCAGG TGAGG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1473:1013..2717-

>mRNA_E-fasciculatus_F_contig1473.3385.1 ID=mRNA_E-fasciculatus_F_contig1473.3385.1|Name=mRNA_E-fasciculatus_F_contig1473.3385.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=840bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1473:1013..2717- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGACATTTCCGTCCGGCAGGGGTGATAGGGGCCATCGAGAAGATAGG
GACCGCGTGCGTGGTGCACCTGACGGAGACGAGAGTACACCTCTCAGTGC
AGGAGAGCGGCTCGGAAGGGGTAGACGTCTACGCGGAGCTGATTCAGATG
GGACATTTCCGTCCGGCAGGGGTGATAGGGGCCATCGAGAAGATAGGGAC
CGCGTGCGTGGTGCACCTGACGGAGACGAGAGTACACCTCTCAGTGCAGG
AGAGCGGCTCGGAAGGGGTAGACGTCTACGCGGAGCTGATTCAGGAGATG
CTGTTCCACGAGTACCGCATCGAGAGCAGGGCGGGCAACGCGATCCTCTT
CGAGGCGAACGCTTCTCTCCTGCTGCAGGCCCTCAACTCCGGCAAGACAT
CGCCGACCTGCCAGATCAAGCTCGCGAAGAGGGCCGGGCAGCCGTGCCTT
TCGATAGAGACGAGGGAGATGCTGTTCCACGAGTACCGCATCGAGAGCAG
GGCGGGCAACGCGATCCTCTTCGAGGCGAACGCTTCTCTCCTGCTGCAGG
CCCTCAACTCCGGCAAGACATCGCCGACCTGCCAGATCAAGCTCGCGAAG
AGGGCCGGGCAGCCGTGCCTTTCGATAGAGACGAGGGCGTTAGAGATCGA
AGTCGTCCACGATATTCCCGTGAAGGTCATGCCGGCAAATGAGGCGGAGT
ACTACCTGCCGCCGAGAGTCCATTCGCCGCAGGTGAGGGCGTTAGAGATC
GAAGTCGTCCACGATATTCCCGTGAAGGTCATGCCGGCAAATGAGGCGGA
GTACTACCTGCCGCCGAGAGTCCATTCGCCGCAGGTGAGG
back to top