mRNA_E-fasciculatus_F_contig14677.3354.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14677.3354.1
Unique NamemRNA_E-fasciculatus_F_contig14677.3354.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14677.3354.1 vs. uniprot
Match: D7G824_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G824_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 8.610e-50
Identity = 100/102 (98.04%), Postives = 101/102 (99.02%), Query Frame = 1
Query:    4 AQGATQGQRLEKLLAHDFSSPRGRSAAEKNAYVLLRKRKFKSAAAVFLLPRPAMVKEALQVILMHVKDLQLALLIARLVEIRDGGGGAVTSPRTTGSLGGFS 309
            +QGATQGQRLEKLLAHDFSSPRGRSAAEKNAYVLLRKRKFKSAAAVFLLPRPAMVKEALQVILMHVKDLQLALLIARLVEIRDGGG AVTSPRTTGSLGGFS
Sbjct: 1858 SQGATQGQRLEKLLAHDFSSPRGRSAAEKNAYVLLRKRKFKSAAAVFLLPRPAMVKEALQVILMHVKDLQLALLIARLVEIRDGGG-AVTSPRTTGSLGGFS 1958          
BLAST of mRNA_E-fasciculatus_F_contig14677.3354.1 vs. uniprot
Match: A0A6H5K928_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K928_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 1.180e-49
Identity = 97/102 (95.10%), Postives = 99/102 (97.06%), Query Frame = 1
Query:    4 AQGATQGQRLEKLLAHDFSSPRGRSAAEKNAYVLLRKRKFKSAAAVFLLPRPAMVKEALQVILMHVKDLQLALLIARLVEIRDGGGGAVTSPRTTGSLGGFS 309
            +QGATQGQRLEKLLAHDFSSPRGRSAAEKNAYVLLRKRKFKSA AVFLLPRPAMVKEALQVILMHVKDLQLALLIARLVEIRDGGGGAV SPR +GSLGGFS
Sbjct: 1949 SQGATQGQRLEKLLAHDFSSPRGRSAAEKNAYVLLRKRKFKSAVAVFLLPRPAMVKEALQVILMHVKDLQLALLIARLVEIRDGGGGAVASPRASGSLGGFS 2050          
BLAST of mRNA_E-fasciculatus_F_contig14677.3354.1 vs. uniprot
Match: A0A7S3V901_9STRA (Hypothetical protein (Fragment) n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V901_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 7.930e-16
Identity = 46/93 (49.46%), Postives = 63/93 (67.74%), Query Frame = 1
Query:   31 LEKLLAHDFSSPRGRSAAEKNAYVLLRKRKFKSAAAVFLLPRPAMVKEALQVILMHVKDLQLALLIARLVEIRDGGGGAVTSPRTTGSLGGFS 309
            L+ +  ++FSS RGR AAEKNA+ LLRKRK+ +AAA FLL  P M+K AL +I+  ++DL LAL +ARL++      GA+ +  T G   GFS
Sbjct:  608 LQFVTKYNFSSQRGRMAAEKNAFSLLRKRKYGAAAAFFLLAEPPMMKSALNIIVTKMEDLSLALFVARLIKANRSSPGAINNDLTIGGSNGFS 700          
BLAST of mRNA_E-fasciculatus_F_contig14677.3354.1 vs. uniprot
Match: B8CG37_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CG37_THAPS)

HSP 1 Score: 79.7 bits (195), Expect = 7.050e-15
Identity = 42/71 (59.15%), Postives = 54/71 (76.06%), Query Frame = 1
Query:   31 LEKLLAHDFSSPRGRSAAEKNAYVLLRKRKFKSAAAVFLLPRPAMVKEALQVILMHVKDLQLALLIARLVE 243
            L+ ++ HDFSS RGR AAEKNAY LLRKRK+ +AA+ FLL  P M+K AL VI   +KD+ LA ++ARL+E
Sbjct: 1992 LKFIIDHDFSSERGRKAAEKNAYSLLRKRKYATAASFFLLAEPPMIKTALDVIKSQMKDITLAFMVARLME 2062          
BLAST of mRNA_E-fasciculatus_F_contig14677.3354.1 vs. uniprot
Match: A0A7S1V8D2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V8D2_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 8.260e-15
Identity = 39/68 (57.35%), Postives = 49/68 (72.06%), Query Frame = 1
Query:   40 LLAHDFSSPRGRSAAEKNAYVLLRKRKFKSAAAVFLLPRPAMVKEALQVILMHVKDLQLALLIARLVE 243
            + + DF S RGR AAEKNAY LLRK K+ +AAA FLLP P M+K AL+ I+    DL +A ++ARLVE
Sbjct:   30 ITSFDFGSDRGRKAAEKNAYSLLRKHKYNAAAAFFLLPEPPMLKTALETIVTKTNDLDMAFMVARLVE 97          
BLAST of mRNA_E-fasciculatus_F_contig14677.3354.1 vs. uniprot
Match: K0SS84_THAOC (Rav1p_C domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SS84_THAOC)

HSP 1 Score: 79.0 bits (193), Expect = 1.210e-14
Identity = 42/71 (59.15%), Postives = 53/71 (74.65%), Query Frame = 1
Query:   31 LEKLLAHDFSSPRGRSAAEKNAYVLLRKRKFKSAAAVFLLPRPAMVKEALQVILMHVKDLQLALLIARLVE 243
            L+ ++ HDFSS RGR AAEKNAY LLRKRK+  AA+ FLL  P M+K A+ VI M ++D  LA ++ARLVE
Sbjct:  149 LKFIMDHDFSSDRGRKAAEKNAYSLLRKRKYAHAASFFLLAEPPMIKTAIDVITMQLQDPSLAFMVARLVE 219          
BLAST of mRNA_E-fasciculatus_F_contig14677.3354.1 vs. uniprot
Match: A0A7S2KBJ0_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KBJ0_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.140e-13
Identity = 41/75 (54.67%), Postives = 56/75 (74.67%), Query Frame = 1
Query:   22 GQRLEKLLA-HDFSSPRGRSAAEKNAYVLLRKRKFKSAAAVFLLPRPAMVKEALQVILMHVKDLQLALLIARLVE 243
            G++  K ++ HDFSS RGR++AEKNAY LLRKRK+ SAA+ FLL  P M+K A+ VI + ++D  LA  +ARL+E
Sbjct:  610 GKKFFKFISDHDFSSDRGRNSAEKNAYSLLRKRKYASAASFFLLAEPPMIKSAVDVIRLQLQDTSLAFFVARLIE 684          
BLAST of mRNA_E-fasciculatus_F_contig14677.3354.1 vs. uniprot
Match: A0A7S2UHS1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UHS1_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.820e-13
Identity = 41/71 (57.75%), Postives = 53/71 (74.65%), Query Frame = 1
Query:   31 LEKLLAHDFSSPRGRSAAEKNAYVLLRKRKFKSAAAVFLLPRPAMVKEALQVILMHVKDLQLALLIARLVE 243
            L+ +L HDFSS +GR AAEKNAY LLRKR++  AA+ FLL  P M+  AL++I+  + DL LA L+ARLVE
Sbjct:  130 LKFILNHDFSSLKGRKAAEKNAYSLLRKRRYGVAASFFLLAEPPMLNTALEIIVSQMGDLNLAFLVARLVE 200          
BLAST of mRNA_E-fasciculatus_F_contig14677.3354.1 vs. uniprot
Match: A0A7S2EUC3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EUC3_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 3.430e-12
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 1
Query:   49 HDFSSPRGRSAAEKNAYVLLRKRKFKSAAAVFLLPRPAMVKEALQVILMHVKDLQLALLIARLV 240
            +DF+S RG+ AAEKNAY LLRKRK+ +AA  FLLP P M+  AL VI+  +KDL LA  +ARL+
Sbjct: 1179 YDFTSERGKKAAEKNAYSLLRKRKYLAAATFFLLPEPPMLNTALDVIVTKMKDLSLAFFVARLI 1242          
BLAST of mRNA_E-fasciculatus_F_contig14677.3354.1 vs. uniprot
Match: B7GBJ7_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GBJ7_PHATC)

HSP 1 Score: 69.3 bits (168), Expect = 3.040e-11
Identity = 46/107 (42.99%), Postives = 57/107 (53.27%), Query Frame = 1
Query:   40 LLAHDFSSPRGRSAAEKNAYVLLRKRKFKSAAAVFLLPRPAMVKEALQVILMHVKDLQLALLIARLVE-------------------IRDGGGGAVTSPRTTGSLGG 303
            L +HDFS  RGR AAEKNAY LLRK ++  A+A FLL  P  +K AL+VI+  ++D  LA  +ARL E                   I  GGGG    P +  SL G
Sbjct:  530 LTSHDFSDERGRRAAEKNAYSLLRKNRYGIASAFFLLAEPPFLKSALEVIVTKMRDSDLAFAVARLTESSVAALQPSLNASSVGLGGILGGGGGYAIPPGSDSSLDG 636          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14677.3354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G824_ECTSI8.610e-5098.04PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K928_9PHAE1.180e-4995.10PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S3V901_9STRA7.930e-1649.46Hypothetical protein (Fragment) n=2 Tax=Chaetocero... [more]
B8CG37_THAPS7.050e-1559.15Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S1V8D2_9STRA8.260e-1557.35Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
K0SS84_THAOC1.210e-1459.15Rav1p_C domain-containing protein (Fragment) n=1 T... [more]
A0A7S2KBJ0_9STRA1.140e-1354.67Hypothetical protein n=2 Tax=Skeletonema marinoi T... [more]
A0A7S2UHS1_9STRA2.820e-1357.75Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S2EUC3_9STRA3.430e-1259.38Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
B7GBJ7_PHATC3.040e-1142.99Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14677contigE-fasciculatus_F_contig14677:2481..3237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.5
Seed ortholog evalue9.6e-43
Seed eggNOG ortholog2880.D7G824
EggNOG free text desc.vacuolar proton-transporting V-type ATPase complex assembly
EggNOG OGsKOG1064@1,KOG1064@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size369
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927951.9027648-CDS-E-fasciculatus_F_contig14677:2480..26661622927951.9027648-CDS-E-fasciculatus_F_contig14677:2480..2666Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14677 2481..2666 -
1695995764.1303535-CDS-E-fasciculatus_F_contig14677:2480..26661695995764.1303535-CDS-E-fasciculatus_F_contig14677:2480..2666Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14677 2481..2666 -
1622927951.920862-CDS-E-fasciculatus_F_contig14677:3054..32371622927951.920862-CDS-E-fasciculatus_F_contig14677:3054..3237Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14677 3055..3237 -
1695995764.142059-CDS-E-fasciculatus_F_contig14677:3054..32371695995764.142059-CDS-E-fasciculatus_F_contig14677:3054..3237Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14677 3055..3237 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14677.3354.1prot_E-fasciculatus_F_contig14677.3354.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14677 2481..3237 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14677.3354.1

>prot_E-fasciculatus_F_contig14677.3354.1 ID=prot_E-fasciculatus_F_contig14677.3354.1|Name=mRNA_E-fasciculatus_F_contig14677.3354.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=123bp
SAQGATQGQRLEKLLAHDFSSPRGRSAAEKNAYVLLRKRKFKSAAAVFLL
PRPAMVKEALQVILMHVKDLQLALLIARLVEIRDGGGGAVTSPRTTGSLG
GFSGVGGYGGAPGGGGGGFGGGF
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mRNA from alignment at E-fasciculatus_F_contig14677:2481..3237-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14677.3354.1 ID=mRNA_E-fasciculatus_F_contig14677.3354.1|Name=mRNA_E-fasciculatus_F_contig14677.3354.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=757bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14677:2481..3237- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCAGCTCAAGGCGCCACCCAGGGCCAGCGCCTGGAGAAGCTTCTCGCGCA CGACTTCAGCTCCCCGCGGGGACGGTCAGCCGCGGAGAAAAATGCCTACG TACTCTTGCGGAAGAGGAAGTTCAAGTCAGCCGCGGCAGTGTTTCTGCTG CCAAGGCCCGCCATGGTCAAGGAAGCGTTGCAGGTAACGGGGGAGAGGAA TCCGGGTTGTGCGGACGCGGGGAAGCCGGGCGATACAGCCGGGGAGATAC ACACGCACACACTTTTTTTTTTTGTGGTGAAAGTGTTGGTGCGACGCTCG CTCCCGAGCCGAAAATCGGTTTGCCTCGAAACACGGACGGCCACGTGGGG TACAAGAGAGATAGGGAGAGAGAGAGAGACACGACTCCCAAGCTGCTCAT CGATTTTATGTTGAAGTTTCCAGGCAAGAGACGTAGGGTGTCGTCTCGGG CGTACCGTACACCTCCGTACCGCCGTTTGCGGCCCCCCTCGTTTTCCTCG TAACAAGATACAATTTCAGAATATACCCCTCCGACTTATGATTGCCGTCC CCTCGTCCCGATCGATCGAAGGTAATCTTGATGCACGTCAAAGACCTCCA GCTGGCATTGCTGATCGCGCGGCTGGTGGAAATCCGCGACGGAGGAGGTG GAGCGGTAACGTCCCCAAGAACGACCGGTTCCCTCGGCGGATTCAGCGGC GTGGGTGGATACGGCGGTGCCCCCGGCGGCGGGGGCGGGGGCTTCGGCGG GGGCTTT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14677:2481..3237-

>mRNA_E-fasciculatus_F_contig14677.3354.1 ID=mRNA_E-fasciculatus_F_contig14677.3354.1|Name=mRNA_E-fasciculatus_F_contig14677.3354.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=738bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14677:2481..3237- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCAGCTCAAGGCGCCACCCAGGGCCAGCGCCTGGAGAAGCTTCTCGCGCA
CGACTTCAGCTCCCCGCGGGGACGGTCAGCCGCGGAGAAAAATGCCTACG
TACTCTTGCGGAAGAGGAAGTTCAAGTCAGCCGCGGCAGTGTTTCTGCTG
CCAAGGCCCGCCATGGTCAAGGAAGCGTTGCAGTCAGCTCAAGGCGCCAC
CCAGGGCCAGCGCCTGGAGAAGCTTCTCGCGCACGACTTCAGCTCCCCGC
GGGGACGGTCAGCCGCGGAGAAAAATGCCTACGTACTCTTGCGGAAGAGG
AAGTTCAAGTCAGCCGCGGCAGTGTTTCTGCTGCCAAGGCCCGCCATGGT
CAAGGAAGCGTTGCAGGTAATCTTGATGCACGTCAAAGACCTCCAGCTGG
CATTGCTGATCGCGCGGCTGGTGGAAATCCGCGACGGAGGAGGTGGAGCG
GTAACGTCCCCAAGAACGACCGGTTCCCTCGGCGGATTCAGCGGCGTGGG
TGGATACGGCGGTGCCCCCGGCGGCGGGGGCGGGGGCTTCGGCGGGGGCT
TTGTAATCTTGATGCACGTCAAAGACCTCCAGCTGGCATTGCTGATCGCG
CGGCTGGTGGAAATCCGCGACGGAGGAGGTGGAGCGGTAACGTCCCCAAG
AACGACCGGTTCCCTCGGCGGATTCAGCGGCGTGGGTGGATACGGCGGTG
CCCCCGGCGGCGGGGGCGGGGGCTTCGGCGGGGGCTTT
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