mRNA_E-fasciculatus_F_contig14677.3354.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14677.3354.1 vs. uniprot
Match: D7G824_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G824_ECTSI) HSP 1 Score: 179 bits (454), Expect = 8.610e-50 Identity = 100/102 (98.04%), Postives = 101/102 (99.02%), Query Frame = 1
Query: 4 AQGATQGQRLEKLLAHDFSSPRGRSAAEKNAYVLLRKRKFKSAAAVFLLPRPAMVKEALQVILMHVKDLQLALLIARLVEIRDGGGGAVTSPRTTGSLGGFS 309
+QGATQGQRLEKLLAHDFSSPRGRSAAEKNAYVLLRKRKFKSAAAVFLLPRPAMVKEALQVILMHVKDLQLALLIARLVEIRDGGG AVTSPRTTGSLGGFS
Sbjct: 1858 SQGATQGQRLEKLLAHDFSSPRGRSAAEKNAYVLLRKRKFKSAAAVFLLPRPAMVKEALQVILMHVKDLQLALLIARLVEIRDGGG-AVTSPRTTGSLGGFS 1958
BLAST of mRNA_E-fasciculatus_F_contig14677.3354.1 vs. uniprot
Match: A0A6H5K928_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K928_9PHAE) HSP 1 Score: 179 bits (453), Expect = 1.180e-49 Identity = 97/102 (95.10%), Postives = 99/102 (97.06%), Query Frame = 1
Query: 4 AQGATQGQRLEKLLAHDFSSPRGRSAAEKNAYVLLRKRKFKSAAAVFLLPRPAMVKEALQVILMHVKDLQLALLIARLVEIRDGGGGAVTSPRTTGSLGGFS 309
+QGATQGQRLEKLLAHDFSSPRGRSAAEKNAYVLLRKRKFKSA AVFLLPRPAMVKEALQVILMHVKDLQLALLIARLVEIRDGGGGAV SPR +GSLGGFS
Sbjct: 1949 SQGATQGQRLEKLLAHDFSSPRGRSAAEKNAYVLLRKRKFKSAVAVFLLPRPAMVKEALQVILMHVKDLQLALLIARLVEIRDGGGGAVASPRASGSLGGFS 2050
BLAST of mRNA_E-fasciculatus_F_contig14677.3354.1 vs. uniprot
Match: A0A7S3V901_9STRA (Hypothetical protein (Fragment) n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V901_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 7.930e-16 Identity = 46/93 (49.46%), Postives = 63/93 (67.74%), Query Frame = 1
Query: 31 LEKLLAHDFSSPRGRSAAEKNAYVLLRKRKFKSAAAVFLLPRPAMVKEALQVILMHVKDLQLALLIARLVEIRDGGGGAVTSPRTTGSLGGFS 309
L+ + ++FSS RGR AAEKNA+ LLRKRK+ +AAA FLL P M+K AL +I+ ++DL LAL +ARL++ GA+ + T G GFS
Sbjct: 608 LQFVTKYNFSSQRGRMAAEKNAFSLLRKRKYGAAAAFFLLAEPPMMKSALNIIVTKMEDLSLALFVARLIKANRSSPGAINNDLTIGGSNGFS 700
BLAST of mRNA_E-fasciculatus_F_contig14677.3354.1 vs. uniprot
Match: B8CG37_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CG37_THAPS) HSP 1 Score: 79.7 bits (195), Expect = 7.050e-15 Identity = 42/71 (59.15%), Postives = 54/71 (76.06%), Query Frame = 1
Query: 31 LEKLLAHDFSSPRGRSAAEKNAYVLLRKRKFKSAAAVFLLPRPAMVKEALQVILMHVKDLQLALLIARLVE 243
L+ ++ HDFSS RGR AAEKNAY LLRKRK+ +AA+ FLL P M+K AL VI +KD+ LA ++ARL+E
Sbjct: 1992 LKFIIDHDFSSERGRKAAEKNAYSLLRKRKYATAASFFLLAEPPMIKTALDVIKSQMKDITLAFMVARLME 2062
BLAST of mRNA_E-fasciculatus_F_contig14677.3354.1 vs. uniprot
Match: A0A7S1V8D2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V8D2_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 8.260e-15 Identity = 39/68 (57.35%), Postives = 49/68 (72.06%), Query Frame = 1
Query: 40 LLAHDFSSPRGRSAAEKNAYVLLRKRKFKSAAAVFLLPRPAMVKEALQVILMHVKDLQLALLIARLVE 243
+ + DF S RGR AAEKNAY LLRK K+ +AAA FLLP P M+K AL+ I+ DL +A ++ARLVE
Sbjct: 30 ITSFDFGSDRGRKAAEKNAYSLLRKHKYNAAAAFFLLPEPPMLKTALETIVTKTNDLDMAFMVARLVE 97
BLAST of mRNA_E-fasciculatus_F_contig14677.3354.1 vs. uniprot
Match: K0SS84_THAOC (Rav1p_C domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SS84_THAOC) HSP 1 Score: 79.0 bits (193), Expect = 1.210e-14 Identity = 42/71 (59.15%), Postives = 53/71 (74.65%), Query Frame = 1
Query: 31 LEKLLAHDFSSPRGRSAAEKNAYVLLRKRKFKSAAAVFLLPRPAMVKEALQVILMHVKDLQLALLIARLVE 243
L+ ++ HDFSS RGR AAEKNAY LLRKRK+ AA+ FLL P M+K A+ VI M ++D LA ++ARLVE
Sbjct: 149 LKFIMDHDFSSDRGRKAAEKNAYSLLRKRKYAHAASFFLLAEPPMIKTAIDVITMQLQDPSLAFMVARLVE 219
BLAST of mRNA_E-fasciculatus_F_contig14677.3354.1 vs. uniprot
Match: A0A7S2KBJ0_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KBJ0_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 1.140e-13 Identity = 41/75 (54.67%), Postives = 56/75 (74.67%), Query Frame = 1
Query: 22 GQRLEKLLA-HDFSSPRGRSAAEKNAYVLLRKRKFKSAAAVFLLPRPAMVKEALQVILMHVKDLQLALLIARLVE 243
G++ K ++ HDFSS RGR++AEKNAY LLRKRK+ SAA+ FLL P M+K A+ VI + ++D LA +ARL+E
Sbjct: 610 GKKFFKFISDHDFSSDRGRNSAEKNAYSLLRKRKYASAASFFLLAEPPMIKSAVDVIRLQLQDTSLAFFVARLIE 684
BLAST of mRNA_E-fasciculatus_F_contig14677.3354.1 vs. uniprot
Match: A0A7S2UHS1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UHS1_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 2.820e-13 Identity = 41/71 (57.75%), Postives = 53/71 (74.65%), Query Frame = 1
Query: 31 LEKLLAHDFSSPRGRSAAEKNAYVLLRKRKFKSAAAVFLLPRPAMVKEALQVILMHVKDLQLALLIARLVE 243
L+ +L HDFSS +GR AAEKNAY LLRKR++ AA+ FLL P M+ AL++I+ + DL LA L+ARLVE
Sbjct: 130 LKFILNHDFSSLKGRKAAEKNAYSLLRKRRYGVAASFFLLAEPPMLNTALEIIVSQMGDLNLAFLVARLVE 200
BLAST of mRNA_E-fasciculatus_F_contig14677.3354.1 vs. uniprot
Match: A0A7S2EUC3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EUC3_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 3.430e-12 Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 1
Query: 49 HDFSSPRGRSAAEKNAYVLLRKRKFKSAAAVFLLPRPAMVKEALQVILMHVKDLQLALLIARLV 240
+DF+S RG+ AAEKNAY LLRKRK+ +AA FLLP P M+ AL VI+ +KDL LA +ARL+
Sbjct: 1179 YDFTSERGKKAAEKNAYSLLRKRKYLAAATFFLLPEPPMLNTALDVIVTKMKDLSLAFFVARLI 1242
BLAST of mRNA_E-fasciculatus_F_contig14677.3354.1 vs. uniprot
Match: B7GBJ7_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GBJ7_PHATC) HSP 1 Score: 69.3 bits (168), Expect = 3.040e-11 Identity = 46/107 (42.99%), Postives = 57/107 (53.27%), Query Frame = 1
Query: 40 LLAHDFSSPRGRSAAEKNAYVLLRKRKFKSAAAVFLLPRPAMVKEALQVILMHVKDLQLALLIARLVE-------------------IRDGGGGAVTSPRTTGSLGG 303
L +HDFS RGR AAEKNAY LLRK ++ A+A FLL P +K AL+VI+ ++D LA +ARL E I GGGG P + SL G
Sbjct: 530 LTSHDFSDERGRRAAEKNAYSLLRKNRYGIASAFFLLAEPPFLKSALEVIVTKMRDSDLAFAVARLTESSVAALQPSLNASSVGLGGILGGGGGYAIPPGSDSSLDG 636 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14677.3354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14677.3354.1 >prot_E-fasciculatus_F_contig14677.3354.1 ID=prot_E-fasciculatus_F_contig14677.3354.1|Name=mRNA_E-fasciculatus_F_contig14677.3354.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=123bp SAQGATQGQRLEKLLAHDFSSPRGRSAAEKNAYVLLRKRKFKSAAAVFLLback to top mRNA from alignment at E-fasciculatus_F_contig14677:2481..3237- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14677.3354.1 ID=mRNA_E-fasciculatus_F_contig14677.3354.1|Name=mRNA_E-fasciculatus_F_contig14677.3354.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=757bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14677:2481..3237- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14677:2481..3237- >mRNA_E-fasciculatus_F_contig14677.3354.1 ID=mRNA_E-fasciculatus_F_contig14677.3354.1|Name=mRNA_E-fasciculatus_F_contig14677.3354.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=738bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14677:2481..3237- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |