mRNA_E-fasciculatus_F_contig14625.3331.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14625.3331.1
Unique NamemRNA_E-fasciculatus_F_contig14625.3331.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14625.3331.1 vs. uniprot
Match: D8LGQ2_ECTSI (U-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGQ2_ECTSI)

HSP 1 Score: 238 bits (607), Expect = 4.350e-74
Identity = 138/170 (81.18%), Postives = 141/170 (82.94%), Query Frame = 1
Query:  172 MLLENGSDKDQPNGMGWTPLHEACYFNHLDTVQLLLVHGADPTIKNVQGAMPYNMTSFQPIRNLLREIGGEEAAKTMPTPTFSVCVNEQGQMFVRVTAGEADKEEAKAGGEGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDSGEVLHKGPMLGELPALGRPPGAS 681
            MLLEN SDKDQPNGMGWTPLHEACYFNHLDTVQLLLVHGADPTIKNVQGAMPYNMTSFQPIR+LLREIGGEEAAKTMPTPTFSVCVNEQGQMFVRVTAGEADKE         XXXXXXXXXXX                XXX P+ GEVLHKGPMLGELPALGRPP +S
Sbjct:    1 MLLENESDKDQPNGMGWTPLHEACYFNHLDTVQLLLVHGADPTIKNVQGAMPYNMTSFQPIRDLLREIGGEEAAKTMPTPTFSVCVNEQGQMFVRVTAGEADKEXXXXXXX-XXXXXXXXXXXXASSPSRSRSPQGRAGSXXXGPEGGEVLHKGPMLGELPALGRPPVSS 169          
BLAST of mRNA_E-fasciculatus_F_contig14625.3331.1 vs. uniprot
Match: A0A6H5JAZ1_9PHAE (U-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAZ1_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 1.870e-39
Identity = 111/120 (92.50%), Postives = 113/120 (94.17%), Query Frame = 1
Query:  322 MPYNMTSFQPIRNLLREIGGEEAAKTMPTPTFSVCVNEQGQMFVRVTAGEADKEEAKAGGEGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDSGEVLHKGPMLGELPALGRPPGAS 681
            MPYNMTSFQPIR+LLREIGGEEAAKTMPTPTFSVCVNEQGQMFVRVTAGEAD EE KAGGE  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PD GEVLHKGPMLGELPALGRPP +S
Sbjct:    1 MPYNMTSFQPIRDLLREIGGEEAAKTMPTPTFSVCVNEQGQMFVRVTAGEADNEEEKAGGE-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPDGGEVLHKGPMLGELPALGRPPVSS 119          
BLAST of mRNA_E-fasciculatus_F_contig14625.3331.1 vs. uniprot
Match: A0A7S3ZT12_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZT12_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.990e-31
Identity = 64/137 (46.72%), Postives = 90/137 (65.69%), Query Frame = 1
Query:    1 EVCHRGFTAIAPLLVRAGADAAHIPDAKASCGAHIMRGAPQSALGAAARGGFQTICKMLLENGSDKDQPNGMGWTPLHEACYFNHLDTVQLLLVHGADPTIKNVQGAMPYNMTSFQPIRNLLREIGGEEAAKTMPTP 411
            E CHRGF  I   L+       HIPD +AS    + +  PQSALG A+R GF+ I K+LLE GSDKD  N +GWTPLHEA ++NH+D  + LLV+GA+ T K+ +GA+P+++ S   +R++L+E+GG +A      P
Sbjct:  180 EACHRGFDGIVRKLLTGNKTLDHIPDVEASKAFPLAKPPPQSALGEASRCGFEDIVKVLLEAGSDKDLVNHLGWTPLHEAAFYNHVDVARTLLVYGANATKKDARGAVPFHVASLPSVRDVLKELGGPDACPERDCP 316          
BLAST of mRNA_E-fasciculatus_F_contig14625.3331.1 vs. uniprot
Match: A0A7S1TU65_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TU65_9STRA)

HSP 1 Score: 118 bits (295), Expect = 5.770e-27
Identity = 58/120 (48.33%), Postives = 82/120 (68.33%), Query Frame = 1
Query:   67 HIPDAKASCGAHIMRGAPQSALGAAARGGFQTICKMLLENGSDKDQPNGMGWTPLHEACYFNHLDTVQLLLVHGADPTIKNVQGAMPYNMTSFQPIRNLLREIGGEEAA-KTMPTPTFSV 423
            HIPD +   G+  ++  P +ALG AAR GF  I K+L+E G+DKD  N  GWTPLHEA + NHL TV+ LL++GA+PTI+N +GA+PY + +   +R  +REI GE+A  ++MP  +  V
Sbjct:  223 HIPDDECLSGSPFLQAPPTTALGEAARCGFSAIIKVLVEAGADKDLANHEGWTPLHEAAFHNHLGTVKTLLIYGANPTIRNKKGALPYQLAALPAVRTTIREIWGEDAVDESMPNLSAGV 342          
BLAST of mRNA_E-fasciculatus_F_contig14625.3331.1 vs. uniprot
Match: A0A6H5JEM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEM2_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 3.280e-24
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 1
Query:    1 EVCHRGFTAIAPLLVRAGADAAHIPDAKASCGAHIMRGAPQSALGAAARGGFQTI 165
            EVCHRGFTAIA LLV+AGAD AHIPDAKASCGAHIMRGAPQSALGAAARGGFQT+
Sbjct:   75 EVCHRGFTAIAALLVKAGADVAHIPDAKASCGAHIMRGAPQSALGAAARGGFQTV 129          
BLAST of mRNA_E-fasciculatus_F_contig14625.3331.1 vs. uniprot
Match: A0A7S2XYQ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYQ7_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 8.300e-14
Identity = 43/119 (36.13%), Postives = 60/119 (50.42%), Query Frame = 1
Query:   67 HIPDAKASCGAHIMRGAPQSALGAAARGGFQTICKMLLENGSDKDQPNGMGWTPLHEACYFNHLDTVQLLLVHGADPTIKNVQGAMPYNMTSFQPIRNLLREIGGEEAAKTMPTPTFSV 423
            ++PD  +S     +R   Q AL                     KD+ N +GWTPLHEA +F   + VQ LLV+G D T K   GAM Y++ S   I+ +++++GG EAA  M  P  SV
Sbjct:  189 YLPDIDSSTATPFVRAPAQHALAXXXXXXXXXXXXXXXXXXXPKDKANQLGWTPLHEAAFFCQKEIVQTLLVYGVDATAKTSMGAMAYHLASLPDIKQVIKDLGGAEAAVEMDQPLKSV 307          
BLAST of mRNA_E-fasciculatus_F_contig14625.3331.1 vs. uniprot
Match: A0A1I4DZU2_9RHOB (Ankyrin repeat n=1 Tax=Loktanella salsilacus TaxID=195913 RepID=A0A1I4DZU2_9RHOB)

HSP 1 Score: 60.5 bits (145), Expect = 3.740e-7
Identity = 39/97 (40.21%), Postives = 53/97 (54.64%), Query Frame = 1
Query:  109 RGAPQSALGAAARGGFQTICKMLLENGSDKDQPNGMGWTPLHEACYFNHLDTVQLLLVHGADPTIKNVQGAMPYNMTSFQPIRN------LLREIGG 381
            +G   +A+  AAR G   +C++LLE G+  DQ      T L  AC  NH++TVQLLL HGADP  +N +G  P  + S   + N       LR+ GG
Sbjct:  269 KGLKWAAIHLAARYGRTDLCQVLLEAGASVDQLGDSSHTALMLACEENHVETVQLLLEHGADPHRENAKGRTPERL-SLNALGNATETTLFLRQAGG 364          
BLAST of mRNA_E-fasciculatus_F_contig14625.3331.1 vs. uniprot
Match: A0A1S8B4U0_9PEZI (Ankyrin-1 (Fragment) n=1 Tax=Diplodia seriata TaxID=420778 RepID=A0A1S8B4U0_9PEZI)

HSP 1 Score: 56.6 bits (135), Expect = 1.050e-5
Identity = 30/83 (36.14%), Postives = 49/83 (59.04%), Query Frame = 1
Query:  124 SALGAAARGGFQTICKMLLENGSDKDQPNGMGWTPLHEACYFNHLDTVQLLLVHGADPTIKNVQGAMPYNMTSFQPIRNLLRE 372
            +AL  AA+ G Q I + LL  G++ +  +    TPL +AC  NHL  V++LL HGA+P + ++  + P+   + + I  LLR+
Sbjct:  604 TALHLAAQQGHQRIVRWLLGLGANVNSRDPFNRTPLFDACIRNHLGVVEILLDHGANPDVLDINASRPFEAATKEEICTLLRK 686          
BLAST of mRNA_E-fasciculatus_F_contig14625.3331.1 vs. uniprot
Match: A0A6B2LXD6_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LXD6_9EUKA)

HSP 1 Score: 50.8 bits (120), Expect = 1.990e-5
Identity = 27/52 (51.92%), Postives = 33/52 (63.46%), Query Frame = 1
Query:  172 MLLENGSDKDQPNGMGWTPLHEACYFNHLDTVQLLLVHGADPTIKNVQGAMP 327
            MLL++G++ D P+  G T LH AC  N  D V  LL+H ADPTIKNV    P
Sbjct:    1 MLLKHGANPDIPDKGGNTALHCACRNNFNDVVSSLLLHSADPTIKNVWEQTP 52          
BLAST of mRNA_E-fasciculatus_F_contig14625.3331.1 vs. uniprot
Match: A0A158Q9G7_ENTVE (Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Enterobius vermicularis TaxID=51028 RepID=A0A158Q9G7_ENTVE)

HSP 1 Score: 55.5 bits (132), Expect = 2.620e-5
Identity = 30/65 (46.15%), Postives = 40/65 (61.54%), Query Frame = 1
Query:  124 SALGAAARGGFQTICKMLLENGSDKDQPNGMGWTPLHEACYFNHLDTVQLLLVHGADPTIKNVQG 318
            +AL  AA  G + +  ML ENG+  +  N  G TPLH+A   NH   V+ LL+HGADP+IK+  G
Sbjct:   87 TALHWAASFGTEEVVSMLCENGASVNALNAKGETPLHDAVRRNHDGVVRNLLLHGADPSIKDANG 151          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14625.3331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LGQ2_ECTSI4.350e-7481.18U-box domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JAZ1_9PHAE1.870e-3992.50U-box domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S3ZT12_9STRA1.990e-3146.72Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1TU65_9STRA5.770e-2748.33Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A6H5JEM2_9PHAE3.280e-2492.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2XYQ7_9STRA8.300e-1436.13Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A1I4DZU2_9RHOB3.740e-740.21Ankyrin repeat n=1 Tax=Loktanella salsilacus TaxID... [more]
A0A1S8B4U0_9PEZI1.050e-536.14Ankyrin-1 (Fragment) n=1 Tax=Diplodia seriata TaxI... [more]
A0A6B2LXD6_9EUKA1.990e-551.92Uncharacterized protein (Fragment) n=1 Tax=Arcella... [more]
A0A158Q9G7_ENTVE2.620e-546.15Eukaryotic translation initiation factor 3 subunit... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14625contigE-fasciculatus_F_contig14625:141..3266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue8e-11
Seed eggNOG ortholog67593.Physo137086
EggNOG free text desc.Ankyrin repeat
EggNOG OGs3Q7EH@4776,COG0666@1,KOG4177@2759
COG Functional cat.M
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons4
Model size681
Cds size681
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14625.3331.1prot_E-fasciculatus_F_contig14625.3331.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14625 141..3266 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927948.8386753-CDS-E-fasciculatus_F_contig14625:140..3021622927948.8386753-CDS-E-fasciculatus_F_contig14625:140..302Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14625 141..302 +
1695995762.6128275-CDS-E-fasciculatus_F_contig14625:140..3021695995762.6128275-CDS-E-fasciculatus_F_contig14625:140..302Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14625 141..302 +
1622927948.858528-CDS-E-fasciculatus_F_contig14625:909..10561622927948.858528-CDS-E-fasciculatus_F_contig14625:909..1056Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14625 910..1056 +
1695995762.6271765-CDS-E-fasciculatus_F_contig14625:909..10561695995762.6271765-CDS-E-fasciculatus_F_contig14625:909..1056Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14625 910..1056 +
1622927948.871731-CDS-E-fasciculatus_F_contig14625:2350..25121622927948.871731-CDS-E-fasciculatus_F_contig14625:2350..2512Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14625 2351..2512 +
1695995762.6408947-CDS-E-fasciculatus_F_contig14625:2350..25121695995762.6408947-CDS-E-fasciculatus_F_contig14625:2350..2512Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14625 2351..2512 +
1622927948.8826528-CDS-E-fasciculatus_F_contig14625:3056..32661622927948.8826528-CDS-E-fasciculatus_F_contig14625:3056..3266Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14625 3057..3266 +
1695995762.6534796-CDS-E-fasciculatus_F_contig14625:3056..32661695995762.6534796-CDS-E-fasciculatus_F_contig14625:3056..3266Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14625 3057..3266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14625.3331.1

>prot_E-fasciculatus_F_contig14625.3331.1 ID=prot_E-fasciculatus_F_contig14625.3331.1|Name=mRNA_E-fasciculatus_F_contig14625.3331.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=227bp
EVCHRGFTAIAPLLVRAGADAAHIPDAKASCGAHIMRGAPQSALGAAARG
GFQTICKMLLENGSDKDQPNGMGWTPLHEACYFNHLDTVQLLLVHGADPT
IKNVQGAMPYNMTSFQPIRNLLREIGGEEAAKTMPTPTFSVCVNEQGQMF
VRVTAGEADKEEAKAGGEGRGSAGGTAAKKSSSPSRSRSPQGRAGSGGGG
GPDSGEVLHKGPMLGELPALGRPPGAS
back to top

mRNA from alignment at E-fasciculatus_F_contig14625:141..3266+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14625.3331.1 ID=mRNA_E-fasciculatus_F_contig14625.3331.1|Name=mRNA_E-fasciculatus_F_contig14625.3331.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3126bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14625:141..3266+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAAGTTTGCCATCGTGGCTTTACGGCAATCGCCCCGCTGTTGGTGAGGGC GGGGGCGGACGCGGCCCACATCCCCGACGCCAAGGCTTCTTGCGGCGCAC ACATCATGCGGGGGGCTCCGCAGTCTGCCCTGGGAGCGGCGGCCCGCGGG GGGTTTCAAACGGTGACAGCTAGAACAAGTACTACCCAGACATGCGCTTC TGTCAAACGGTGACAGCTACTACTGTAGCACTACAGAACAAGTCCACTAA CCAGACATATACTTCATTCAAACGGTGACAGCTAGCACTACAGAGTTGTA CTATTCAGACGAAAAACACTAAAGAACGGCAACGGTACGAACAATGAGCA TTGCTCTTGCCTTTTTCTCCCGAGAACATAAAAAAAAAAACGAAGCGTTG GTTGTCTTTCATGCACGGCTTCAAGGAGGTCTTCAATTCTCGGTTTTGGG GGAAGTCATGGATGAAACGAGACTGACATGAAGCCGGATGGACAAAGCAG CTATTCAACATTCGCGAAAATACTTCTTCCTGATGGTAATACAGTAGTAA AACCGAAGGGAGGCGAGGGGATGGAACAACATCGCCATACACCTTGAAAG TAGTGTGGATCTTCTCCACGACAAGAACTGACACAACAACCAACAACAAC AATAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA CAACCCTTAACGTGCCGCCTCCAACCTTTGGGCGACACCAAACAACAACC TCCAACATGACAACGTCAGATCTGCAAGATGCTTCTGGAGAACGGGAGCG ACAAGGACCAACCGAACGGCATGGGGTGGACGCCGCTCCACGAGGCGTGC TACTTCAACCACCTTGACACCGTGCAGCTGCTCCTGGTGCACGGCGCTGA CCCTACGATAAAGAACGTGAGGAGACAAGAGTTGGTTGCACGCTACGCCA TTTGGAGATGGAAGCCTGCGATCGGGGGCACGTTGCCACGGGATATATAG CCTTAAAAGTAGTATCTGTGTGGTCGCACAGCAGTAAATCCGCATGGCAC TGTGAAAGGAGATAAGCAGCGAGGACATGTGAGTACGTGCACTTCTGAAA CGCTCCCAGAAGGAGCTCACACAACAAATGGGTGTGGTCCGTCGGATGTA TGTTTGTGTGCGTTTCTCTTAGGACGGTTGAGACCAAACCGTTGGTAGTT GGTGTCTCACAGAAAAGAATGGACCAAGCATATCATAGGAAACGACACAA CTCGAAGGCCTCTCCCGACGCTGAAGCAGAACGGCGGCCAGGACAACTCC GCCGCCGGACGTTTCACCCCACCCCATGTTTCCTAACTCCTCGACATGCT GCCTGCCTGCGCAGATAGCCTGGTCTGAGGTACCAGGCTGTCATTACAGA ACACGCCTGTTTCCTTCTGAGCGAATACCTCTGTCTTCCCGAAACACATG GCTCCCGTAAGACGTCCGACCGTTCTTCTACGCCCCCATAGACTACGTAC GACGCCGAGCACTGCATCAAACGTGACATATACCATCTACCATCGTGATC TTCATGCGACCTTCAGTAGCCATCACCACCACGGCGACGGCTGCTGCTGG GGTGCTTGTTTTTTCTGTCCCTGCACTACTGTATAATAGTGGCGGTGGCG GTGATACGGCGCCGCTGCTGTCGTAGCCGCGGCGTCTCGTTGTGGTGCAC CTCGCACTCACTCAGCGACCACGTAGTAGCCCCCAGACCCACCTGTGCGT TGTAGGAAGGTTGCTATTTGGCCATCGGTGACCGCCGGTCCTGTGGTGAC AATCCTCCGTTCTCTCGAGGACGCGTGGTCAATGGTCCAACGACTAAGTC ATGTAAAACATGGGAGTACGCTTCCCCCCCGGTGATGTATCTGGTTTTGC ATCGAAAATGCAAGTATGATGACCAGCTTCTGGTCCATCCTTCTTGTGAA ACGTAGCCTGGGCCGGCGAAAACCCGGGTGGTATCGCTCAGTCTCAGCAT TGGTCTACCGCCAAACGACCACGGCATGCGTTTGTAGGAGTACTGTAGAT ACCACCCCGCCCCCCTCCGACCTCGCTGCGGCTCTCATCACAAGGAGAAC CCGCCGGATCGAAACCGGTCGTGTCCATCTTTCCTGCGGCACCCCAAAAA GGTAGCCTTCGACCCCCAAACCACACCAAAACGCGCCTGGCGTATCAACC CAAACAACAGGTCCAGGGGGCTATGCCGTACAACATGACGAGCTTCCAGC CGATCCGGAACCTGCTGCGGGAGATCGGGGGCGAGGAGGCCGCCAAGACG ATGCCGACCCCAACCTTCTCCGTGTGCGTCAACGAGCAGGGGCAGATGTT CGTCCGCGTCACGGCCGGCGAGGTGAAATGGCCTACACTTCGGGCTTTTG ACGAAACCGTCGTCGTCGTCGTCTTCATCATCGTTGCCGTCGCCGTCTGT TCGCTCGTGTTATCGCTTGTTGTCATGTTTCGTGCTCGGACGTCGTCCTC GACCTCTGCCCTTTGTTTGTTGAGTCTTTCCTGGCCGATCTGTTTGAGGA CCTTGGCGTCTTGACCCCCCATTGCAAACAGAGCACACAAGATGTGAGCG TTTCCCACCCTTTAGAGCATCATGACCCCGAGTGGACCCTGTGTTGGCAT CGCGCAACAAGACAACAAAAAAAATAAGTAATCCGCCTATAGCCCTACAT CCGAACCCCGAAGTGGTTGATCTATGAACATGCAGCGACGTACATACTGC GGTAGTTTTTCGACGTGTCTCAATCGTGTGAAGTCGGCATGGTTCCAAAC CGGGAAAAAAGCTGGAAAGCATGAATATTCTGCAACTTCACAAATCATTG ACAGCGCTCTTCGTTCCGAAATATTTTCCGGGTGATGATGATGATGGTGA TCGGCTTGACATACAGGCGGACAAGGAAGAGGCCAAGGCCGGGGGGGAAG GGAGGGGGTCGGCGGGCGGGACGGCGGCGAAGAAGTCGTCCTCCCCGTCC AGGTCGCGGAGCCCCCAGGGCCGGGCCGGCAGCGGCGGTGGCGGTGGTCC CGACAGTGGCGAGGTGCTGCACAAGGGGCCGATGCTGGGCGAACTTCCTG CGCTAGGGAGGCCACCGGGTGCGTCC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14625:141..3266+

>mRNA_E-fasciculatus_F_contig14625.3331.1 ID=mRNA_E-fasciculatus_F_contig14625.3331.1|Name=mRNA_E-fasciculatus_F_contig14625.3331.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1362bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14625:141..3266+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAAGTTTGCCATCGTGGCTTTACGGCAATCGCCCCGCTGTTGGTGAGGGC
GGGGGCGGACGCGGCCCACATCCCCGACGCCAAGGCTTCTTGCGGCGCAC
ACATCATGCGGGGGGCTCCGCAGTCTGCCCTGGGAGCGGCGGCCCGCGGG
GGGTTTCAAACGGAAGTTTGCCATCGTGGCTTTACGGCAATCGCCCCGCT
GTTGGTGAGGGCGGGGGCGGACGCGGCCCACATCCCCGACGCCAAGGCTT
CTTGCGGCGCACACATCATGCGGGGGGCTCCGCAGTCTGCCCTGGGAGCG
GCGGCCCGCGGGGGGTTTCAAACGATCTGCAAGATGCTTCTGGAGAACGG
GAGCGACAAGGACCAACCGAACGGCATGGGGTGGACGCCGCTCCACGAGG
CGTGCTACTTCAACCACCTTGACACCGTGCAGCTGCTCCTGGTGCACGGC
GCTGACCCTACGATAAAGAACATCTGCAAGATGCTTCTGGAGAACGGGAG
CGACAAGGACCAACCGAACGGCATGGGGTGGACGCCGCTCCACGAGGCGT
GCTACTTCAACCACCTTGACACCGTGCAGCTGCTCCTGGTGCACGGCGCT
GACCCTACGATAAAGAACGTCCAGGGGGCTATGCCGTACAACATGACGAG
CTTCCAGCCGATCCGGAACCTGCTGCGGGAGATCGGGGGCGAGGAGGCCG
CCAAGACGATGCCGACCCCAACCTTCTCCGTGTGCGTCAACGAGCAGGGG
CAGATGTTCGTCCGCGTCACGGCCGGCGAGGTCCAGGGGGCTATGCCGTA
CAACATGACGAGCTTCCAGCCGATCCGGAACCTGCTGCGGGAGATCGGGG
GCGAGGAGGCCGCCAAGACGATGCCGACCCCAACCTTCTCCGTGTGCGTC
AACGAGCAGGGGCAGATGTTCGTCCGCGTCACGGCCGGCGAGGCGGACAA
GGAAGAGGCCAAGGCCGGGGGGGAAGGGAGGGGGTCGGCGGGCGGGACGG
CGGCGAAGAAGTCGTCCTCCCCGTCCAGGTCGCGGAGCCCCCAGGGCCGG
GCCGGCAGCGGCGGTGGCGGTGGTCCCGACAGTGGCGAGGTGCTGCACAA
GGGGCCGATGCTGGGCGAACTTCCTGCGCTAGGGAGGCCACCGGGTGCGT
CCGCGGACAAGGAAGAGGCCAAGGCCGGGGGGGAAGGGAGGGGGTCGGCG
GGCGGGACGGCGGCGAAGAAGTCGTCCTCCCCGTCCAGGTCGCGGAGCCC
CCAGGGCCGGGCCGGCAGCGGCGGTGGCGGTGGTCCCGACAGTGGCGAGG
TGCTGCACAAGGGGCCGATGCTGGGCGAACTTCCTGCGCTAGGGAGGCCA
CCGGGTGCGTCC
back to top