mRNA_E-fasciculatus_F_contig14613.3324.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14613.3324.1
Unique NamemRNA_E-fasciculatus_F_contig14613.3324.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14613.3324.1 vs. uniprot
Match: A0A6H5KIH1_9PHAE (PPM-type phosphatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KIH1_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 4.230e-21
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:   10 SLQVVRIVRKELRMHGDTQRVCETLVRKAINERYTQDNVSVVLVVLKKFW 159
            S +VVRIVRKELRMHGDTQRVCETLVR+AINERYTQDNVSVVLVVL KFW
Sbjct: 1200 SDEVVRIVRKELRMHGDTQRVCETLVRRAINERYTQDNVSVVLVVLNKFW 1249
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BLAST of mRNA_E-fasciculatus_F_contig14613.3324.1 vs. uniprot
Match: A0A7S2V0C4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0C4_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.540e-7
Identity = 21/48 (43.75%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:   16 QVVRIVRKELRMHGDTQRVCETLVRKAINERYTQDNVSVVLVVLKKFW 159
            +V+ +++ E++ HGD QR  E L   AI++R T+DNV++VLV+L ++W
Sbjct:   97 EVIDLIKTEMKQHGDAQRAVEMLSHVAIHKRRTRDNVTIVLVILNRWW 144
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BLAST of mRNA_E-fasciculatus_F_contig14613.3324.1 vs. uniprot
Match: A0A6H5L355_9PHAE (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L355_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 5.100e-7
Identity = 25/50 (50.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:   10 SLQVVRIVRKELRMHGDTQRVCETLVRKAINERYTQDNVSVVLVVLKKFW 159
            S +VV  V +++++H D QR CE L  KAI ER T+DNVS+VL+V  K++
Sbjct:   43 SEEVVANVYEKMKIHADAQRCCEDLTEKAIVERRTRDNVSLVLLVFNKWF 92
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BLAST of mRNA_E-fasciculatus_F_contig14613.3324.1 vs. uniprot
Match: A0A836CBM8_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBM8_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.860e-6
Identity = 21/47 (44.68%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:   10 SLQVVRIVRKELRMHGDTQRVCETLVRKAINERYTQDNVSVVLVVLK 150
            +++VV+ V  E+ +HGD Q+ CE++  +AI ER+T+DNV+++LV+L+
Sbjct:  535 NVEVVQAVCAEMAVHGDAQKCCESITLRAIRERHTRDNVTMILVMLR 581
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14613.3324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KIH1_9PHAE4.230e-2192.00PPM-type phosphatase domain-containing protein n=2... [more]
A0A7S2V0C4_9STRA2.540e-743.75Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6H5L355_9PHAE5.100e-750.00PPM-type phosphatase domain-containing protein n=1... [more]
A0A836CBM8_9STRA1.860e-644.68Phosphatase 2C-like domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14613contigE-fasciculatus_F_contig14613:2805..2966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.7
Seed ortholog evalue3.6e-18
Seed eggNOG ortholog2880.D7G1B3
KEGG koko:K01090
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927948.2347517-CDS-E-fasciculatus_F_contig14613:2804..29661622927948.2347517-CDS-E-fasciculatus_F_contig14613:2804..2966Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14613 2805..2966 +
1695995762.325992-CDS-E-fasciculatus_F_contig14613:2804..29661695995762.325992-CDS-E-fasciculatus_F_contig14613:2804..2966Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14613 2805..2966 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14613.3324.1prot_E-fasciculatus_F_contig14613.3324.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14613 2805..2966 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14613.3324.1

>prot_E-fasciculatus_F_contig14613.3324.1 ID=prot_E-fasciculatus_F_contig14613.3324.1|Name=mRNA_E-fasciculatus_F_contig14613.3324.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=54bp
FGCSLQVVRIVRKELRMHGDTQRVCETLVRKAINERYTQDNVSVVLVVLK
KFW*
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mRNA from alignment at E-fasciculatus_F_contig14613:2805..2966+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14613.3324.1 ID=mRNA_E-fasciculatus_F_contig14613.3324.1|Name=mRNA_E-fasciculatus_F_contig14613.3324.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=162bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14613:2805..2966+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCGGATGCTCTTTGCAGGTGGTCAGGATCGTGCGGAAAGAGCTGCGCAT
GCACGGTGACACCCAGCGCGTGTGCGAGACGCTGGTGCGTAAGGCGATCA
ACGAGCGGTACACGCAAGACAACGTGTCAGTGGTTCTGGTGGTGCTCAAG
AAGTTTTGGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14613:2805..2966+

>mRNA_E-fasciculatus_F_contig14613.3324.1 ID=mRNA_E-fasciculatus_F_contig14613.3324.1|Name=mRNA_E-fasciculatus_F_contig14613.3324.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=324bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14613:2805..2966+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCGGATGCTCTTTGCAGGTGGTCAGGATCGTGCGGAAAGAGCTGCGCAT
GCACGGTGACACCCAGCGCGTGTGCGAGACGCTGGTGCGTAAGGCGATCA
ACGAGCGGTACACGCAAGACAACGTGTCAGTGGTTCTGGTGGTGCTCAAG
AAGTTTTGGTGATTCGGATGCTCTTTGCAGGTGGTCAGGATCGTGCGGAA
AGAGCTGCGCATGCACGGTGACACCCAGCGCGTGTGCGAGACGCTGGTGC
GTAAGGCGATCAACGAGCGGTACACGCAAGACAACGTGTCAGTGGTTCTG
GTGGTGCTCAAGAAGTTTTGGTGA
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