mRNA_E-fasciculatus_F_contig1461.3322.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1461.3322.1
Unique NamemRNA_E-fasciculatus_F_contig1461.3322.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1461.3322.1 vs. uniprot
Match: A0A6H5J803_9PHAE (Conserved oligomeric Golgi complex subunit 4 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J803_9PHAE)

HSP 1 Score: 438 bits (1126), Expect = 2.870e-144
Identity = 254/303 (83.83%), Postives = 257/303 (84.82%), Query Frame = 1 
Query:   67 MSARASRLRLEEELRNILEQEEKLDGEVNQLLQAKAAATGPAASEEVTPAVALSNGHPAPKAGAAATGAAPTEVGEGADAKAPQDIDNGAVVVVAAGGAAAAEGEEGLAQCLVELSGSVPDFPGLEEKAGALLAQIEDGHGMAERVSRSVRRLDDIQMRVQRALALVEDVINLRGCAEGVRAAVQAGDLAEAATYVRRFREIDAGALADSGEMVDMDEAVRGLSSAVLERFETAVLDMDEPGIAAACPLLAPLGLATRGQELYLGFARRALEAELEAGAGDGSLPATQRLPAIYNTSAAFLRR 975
            MSARASRLRLEEELRNI EQEE+LDGEVNQLLQAKAAAT P A EEV+ AVALSNGH                     DAK PQD+DN               GE GLAQCL ELSGSVPDFPGLEEKA ALLAQIEDGHGMAERVSRSVRRLDDIQMRVQRALALVEDVINLRGCAEGVRAAVQAGDLAEAATYVRRFREIDAGALADSGEMVDMDEAVRGLSSAVLERFETAVLDMDEPGIAAACPLLAPLGLATRGQELYLGFARRALEAELEAGAGDGSLPATQ LPAIYNTSAAFLRR
Sbjct:    1 MSARASRLRLEEELRNISEQEERLDGEVNQLLQAKAAATVPGAPEEVSQAVALSNGHXXXXXXXXXXXXXXXXXXXXXDAKTPQDVDNXXXXXXXXXXXXX-XGEGGLAQCLEELSGSVPDFPGLEEKASALLAQIEDGHGMAERVSRSVRRLDDIQMRVQRALALVEDVINLRGCAEGVRAAVQAGDLAEAATYVRRFREIDAGALADSGEMVDMDEAVRGLSSAVLERFETAVLDMDEPGIAAACPLLAPLGLATRGQELYLGFARRALEAELEAGAGDGSLPATQSLPAIYNTSAAFLRR 302
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1461.3322.1 vs. uniprot
Match: A0A836CCD6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCD6_9STRA)

HSP 1 Score: 142 bits (359), Expect = 2.300e-36
Identity = 95/223 (42.60%), Postives = 122/223 (54.71%), Query Frame = 1 
Query:  373 EGEEGLAQCLVELSGSVPDFPGLEEKAGALLAQIEDGHGMAERVSRSVRRLDDIQMRVQRALALVEDVINLRGCAEGVRAAVQAGDLAEAATYVRRFREIDAGALADSGEMVDMDEAVRGLSSAVLE-------------------RFETAVLDMDEPGIAAACPLLAPLGLATRGQELYLGFARRALE---AELEAGAGDGSLPATQRLPAIYNTSAAFLRR 975
            +G + L  CL ++  + PDF  L     AL AQI +GH  AERVS +VR LD  + R   AL  V++ + LRGCAEGVR A+  GDL  A  +VRRF ++DA AL+ S E+ +M      L   VLE                   RFE AV      GI A CPLL PLGLA   +  ++ FAR  L    AEL+A A  G+ PAT  L A+YN+ AAFL++
Sbjct:   53 DGLQRLRLCLQQVEAARPDFAALRGAGAALSAQISEGHATAERVSGAVRGLDARRARAAAALTRVDEAVELRGCAEGVRGAMARGDLGAAVHHVRRFHQLDAAALSGSAELAEMAAIQEPLRLVVLEGGGHDXXXXXXXXXXXXLSRFEAAVRADSRDGIVAGCPLLGPLGLAAAAKGPFMEFARGLLGSTLAELDAAAPAGA-PATHALSALYNSCAAFLQQ 274
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1461.3322.1 vs. uniprot
Match: A0A4D9D1B9_9STRA (Conserved oligomeric Golgi complex subunit 4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1B9_9STRA)

HSP 1 Score: 130 bits (328), Expect = 4.830e-30
Identity = 80/180 (44.44%), Postives = 104/180 (57.78%), Query Frame = 1 
Query:  439 LEEKAGALLAQIEDGHGMAERVSRSVRRLDDIQMRVQRALALVEDVINLRGCAEGVRAAVQAGDLAEAATYVRRFREIDAGALADSGEMVDMDEAVRGLSSAVLERFETAVLDMDEPGIAAACPLLAPLGLATRGQELYLGFARRALEAELEAGAGDGS-LPATQRLPAIYNTSAAFLRR 975
            L  K  AL   +     +AE++S SVR LD+ QMRVQR LA+VED+INL+ CAEGV  A++  DL +A +YVR+F  I+  +   SG    +  A   L   VL R   AV   +   +   CPLL PLGLA  G  +Y  FA R L+  L+    + S LPA Q LP IYNT+A FL+R
Sbjct:  139 LTAKVSALTEHVYGCQELAEKMSSSVRELDERQMRVQRVLAMVEDIINLKTCAEGVARALEEDDLLDATSYVRQFHSIEGASAKASGHYNVLVAAEARLKETVLRRVHLAVSRSELDDVFKFCPLLGPLGLAKEGASIYESFAERLLKEGLDPLVAETSKLPAVQLLPKIYNTAAGFLQR 318
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1461.3322.1 vs. uniprot
Match: A0A7S2WIB6_9STRA (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WIB6_9STRA)

HSP 1 Score: 130 bits (326), Expect = 8.120e-30
Identity = 77/176 (43.75%), Postives = 109/176 (61.93%), Query Frame = 1 
Query:  448 KAGALLAQIEDGHGMAERVSRSVRRLDDIQMRVQRALALVEDVINLRGCAEGVRAAVQAGDLAEAATYVRRFREIDAGALADSGEMVDMDEAVRGLSSAVLERFETAVLDMDEPGIAAACPLLAPLGLATRGQELYLGFARRALEAELEAG--AGDGSLPATQRLPAIYNTSAAFL 969
            +A  L  QIE+   ++ERVSR++RRLD  QM VQ ALALVED++NL+ CA+GV  A++  DL +A  YVR+F +ID+ A   S +   + +A + L + VL+RFE A    D   +A    LL PLGLA  G + YL FA+R ++  + AG  A  G  P   +LPA++N +  FL
Sbjct:   68 EAAMLAEQIEESRVLSERVSRTIRRLDRAQMNVQHALALVEDIVNLKDCAQGVITALKEEDLRDATGYVRQFHDIDSVAARASADYDRIIQAEKELQTQVLQRFEEATAKADSGEVAKYVALLGPLGLAETGLQSYLAFAKREVQRIVAAGPPAQGGGDPTDGQLPALFNAAHVFL 243
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1461.3322.1 vs. uniprot
Match: A0A0G4F532_VITBC (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F532_VITBC)

HSP 1 Score: 87.4 bits (215), Expect = 2.620e-15
Identity = 51/152 (33.55%), Postives = 87/152 (57.24%), Query Frame = 1 
Query:  442 EEKAGALLAQIEDGHGMAERVSRSVRRLDDIQMRVQRALALVEDVINLRGCAEGVRAAVQAGDLAEAATYVRRFREI--------DAGALADSGEMVD-MDEAVRGLSSAVLERFETAVLDMDEPGIAAACPLLAPLGLATRGQELYLGFAR 870
            +  A  L A ++  H  +E++S  VRRLD ++ R++ AL LVED+++L+ CAEGV +A+  GD   AA ++ ++R +        DA AL DS  ++  +  + + L+  V ++F+ A+ + D+ G++    L  PLGL   G   Y+ F R
Sbjct:   72 QRDAQQLQATLQFVHETSEKLSSRVRRLDTVRSRIEAALQLVEDLLDLKNCAEGVESAMGRGDYETAAKHIAKYRSLAQQFRQGGDASALEDSSAVLQSLKASEKALTQMVRDQFDKAITNRDKTGVSRYAKLFYPLGLEREGINRYITFIR 223
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1461.3322.1 vs. uniprot
Match: A0A812XJP0_9DINO (Conserved oligomeric Golgi complex subunit 4 n=6 Tax=Symbiodinium TaxID=2949 RepID=A0A812XJP0_9DINO)

HSP 1 Score: 81.3 bits (199), Expect = 2.840e-13
Identity = 53/146 (36.30%), Postives = 80/146 (54.79%), Query Frame = 1 
Query:  472 IEDGHGMAERVSRSVRRLDDIQMRVQRALALVEDVINLRGCAEGVRAAVQAGDLAEAATYVRRFR----EIDAGALADSGEMVDMDEAVRGLSSAVLERFETAVLDMDEPGIAAACPLLAPLGLATRGQELYLGFARRALEAELEA 897
            ++   G+A+ +S  VR+LD +  RV  AL LV+D++ LR CA+ V  A+ + D  +AA +V RFR     +  G   D   +  + EA R LS+ V  RFE A+   D  G++    L  PLGLA+ G   Y+ F +R+L  +  A
Sbjct:   65 LQQTSGVADELSFRVRKLDVVCSRVSDALKLVDDLLELRECADQVMKAISSEDFEQAARFVSRFRASQDSLPPGT--DDATVRTLTEAERQLSAIVRRRFEAAMAAKDAAGVSRFAKLFHPLGLASEGVRKYVEFIQRSLAEKASA 208
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1461.3322.1 vs. uniprot
Match: A0A1Q9DLP7_SYMMI (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9DLP7_SYMMI)

HSP 1 Score: 80.9 bits (198), Expect = 4.710e-13
Identity = 53/146 (36.30%), Postives = 80/146 (54.79%), Query Frame = 1 
Query:  472 IEDGHGMAERVSRSVRRLDDIQMRVQRALALVEDVINLRGCAEGVRAAVQAGDLAEAATYVRRFR----EIDAGALADSGEMVDMDEAVRGLSSAVLERFETAVLDMDEPGIAAACPLLAPLGLATRGQELYLGFARRALEAELEA 897
            ++   G+A+ +S  VR+LD +  RV  AL LV+D++ LR CA+ V  A+ + D  +AA +V RFR     +  G   D   +  + EA R LS+ V  RFE A+   D  G++    L  PLGLA+ G   Y+ F +R+L  +  A
Sbjct:  760 LQQTSGVADELSFRVRKLDVVCSRVSDALKLVDDLLELRECADQVMKAISSEDFEQAARFVSRFRASQDSLPPGT--DDATVRTLTEAERQLSAIVRRRFEAAMAAKDAGGVSRFAKLFHPLGLASEGVRKYVEFIQRSLAEKASA 903
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1461.3322.1 vs. uniprot
Match: I2CQF7_NANGC (Oligomeric golgi complex component (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQF7_NANGC)

HSP 1 Score: 73.2 bits (178), Expect = 1.080e-12
Identity = 43/90 (47.78%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:  502 VSRSVRRLDDIQMRVQRALALVEDVINLRGCAEGVRAAVQAGDLAEAATYVRRFREIDAGALADSGEMVDMDEAVRGLSSAVLERFETAV 771
            +S SVR LD+ QMRVQR LA+VED+INL+ CAEGV  A++  DL  A +YVR+F  I+  +   SG    +  A   L   VL R   AV
Sbjct:    1 MSSSVRELDERQMRVQRVLAMVEDIINLKTCAEGVARALEEDDLLGATSYVRQFHSIEGASAKASGHYNVLVAAEARLKETVLRRVHLAV 90
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1461.3322.1 vs. uniprot
Match: A0A7S1A9N9_NOCSC (Conserved oligomeric Golgi complex subunit 4 (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1A9N9_NOCSC)

HSP 1 Score: 70.5 bits (171), Expect = 5.230e-10
Identity = 49/134 (36.57%), Postives = 71/134 (52.99%), Query Frame = 1 
Query:  487 GMAERVSRSVRRLDDIQMRVQRALALVEDVINLRGCAEGVRAAVQAGDLAEAATYVRRFREIDAGALA---DSGEMVDMDEAVRGLSSAVLERFETAVLDMDEPGIAAACPLLAPLGLATRGQELYLGFARRAL 879
            G+A+ +S  VR+LD I  R+  AL  V+D++ LR CA+ V   +Q  +  +AA YV RFR    G L    D   +  + +A   LS  V +RFE A+   D+  I+    L   LGL+  G + YL F R +L
Sbjct:   75 GVADELSGRVRKLDTICGRITEALKFVDDMLELRECADQVMKTIQNEEFEQAAKYVSRFRACQ-GVLPPGIDDASIRVLKQAEEQLSVIVRKRFEEAMSTKDQASISRFAKLFPSLGLSGEGVKKYLEFIRHSL 207
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1461.3322.1 vs. uniprot
Match: D0MY16_PHYIT (Conserved oligomeric Golgi complex subunit 4 n=14 Tax=Phytophthora TaxID=4783 RepID=D0MY16_PHYIT)

HSP 1 Score: 58.9 bits (141), Expect = 6.350e-6
Identity = 37/130 (28.46%), Postives = 66/130 (50.77%), Query Frame = 1 
Query:  424 PDFPGLEEKAGALLAQIEDGHGMAERVSRSVRRLDDIQMRVQRALALVEDVINLRGCAEGVRAAVQAGDLAEAATYVRRFREIDAGALADSGEMVDMDEAVRGLSSAVLERFETAVLDMDEPGIAAACPL 813
            PD   L  + GA++ ++ + + +AE+++R VRRLD IQ+R+  AL     ++ LR    G+R A+Q     EAAT+++  + I+     D  + + +D     L + +   FE  +   D   +    PL
Sbjct:   60 PDVTVLCAQTGAVVERVANANDVAEKMTREVRRLDVIQLRLGEALEQSAQLLTLRNALAGIRRAMQQQRYPEAATFLQTLKNIEQQMPLDVADKLRVDTIENDLKAVIEGAFEDGLRAGDTRQVQTYAPL 189
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1461.3322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5J803_9PHAE2.870e-14483.83Conserved oligomeric Golgi complex subunit 4 n=2 T... [more]
A0A836CCD6_9STRA2.300e-3642.60Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9D1B9_9STRA4.830e-3044.44Conserved oligomeric Golgi complex subunit 4 n=2 T... [more]
A0A7S2WIB6_9STRA8.120e-3043.75Conserved oligomeric Golgi complex subunit 4 n=1 T... [more]
A0A0G4F532_VITBC2.620e-1533.55Conserved oligomeric Golgi complex subunit 4 n=1 T... [more]
A0A812XJP0_9DINO2.840e-1336.30Conserved oligomeric Golgi complex subunit 4 n=6 T... [more]
A0A1Q9DLP7_SYMMI4.710e-1336.30Conserved oligomeric Golgi complex subunit 4 n=1 T... [more]
I2CQF7_NANGC1.080e-1247.78Oligomeric golgi complex component (Fragment) n=1 ... [more]
A0A7S1A9N9_NOCSC5.230e-1036.57Conserved oligomeric Golgi complex subunit 4 (Frag... [more]
D0MY16_PHYIT6.350e-628.46Conserved oligomeric Golgi complex subunit 4 n=14 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1461contigE-fasciculatus_F_contig1461:12990..17014 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score451.8
Seed ortholog evalue2.7e-124
Seed eggNOG ortholog2880.D7FT87
KEGG koko:K20291
EggNOG free text desc.Golgi vesicle prefusion complex stabilization
EggNOG OGsKOG0412@1,KOG0412@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categorymitochondrion
Exons5
Model size977
Cds size975
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1461.3322.1prot_E-fasciculatus_F_contig1461.3322.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1461 12990..17014 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927948.0477805-CDS-E-fasciculatus_F_contig1461:12989..131541622927948.0477805-CDS-E-fasciculatus_F_contig1461:12989..13154Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1461 12990..13154 +
1695995762.2297819-CDS-E-fasciculatus_F_contig1461:12989..131541695995762.2297819-CDS-E-fasciculatus_F_contig1461:12989..13154Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1461 12990..13154 +
1622927948.0681207-CDS-E-fasciculatus_F_contig1461:14696..149961622927948.0681207-CDS-E-fasciculatus_F_contig1461:14696..14996Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1461 14697..14996 +
1695995762.2424555-CDS-E-fasciculatus_F_contig1461:14696..149961695995762.2424555-CDS-E-fasciculatus_F_contig1461:14696..14996Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1461 14697..14996 +
1622927948.080663-CDS-E-fasciculatus_F_contig1461:15384..155191622927948.080663-CDS-E-fasciculatus_F_contig1461:15384..15519Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1461 15385..15519 +
1695995762.2513716-CDS-E-fasciculatus_F_contig1461:15384..155191695995762.2513716-CDS-E-fasciculatus_F_contig1461:15384..15519Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1461 15385..15519 +
1622927948.0931628-CDS-E-fasciculatus_F_contig1461:16026..161571622927948.0931628-CDS-E-fasciculatus_F_contig1461:16026..16157Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1461 16027..16157 +
1695995762.2612343-CDS-E-fasciculatus_F_contig1461:16026..161571695995762.2612343-CDS-E-fasciculatus_F_contig1461:16026..16157Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1461 16027..16157 +
1622927948.1036592-CDS-E-fasciculatus_F_contig1461:16770..170141622927948.1036592-CDS-E-fasciculatus_F_contig1461:16770..17014Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1461 16771..17014 +
1695995762.271465-CDS-E-fasciculatus_F_contig1461:16770..170141695995762.271465-CDS-E-fasciculatus_F_contig1461:16770..17014Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1461 16771..17014 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1461.3322.1

>prot_E-fasciculatus_F_contig1461.3322.1 ID=prot_E-fasciculatus_F_contig1461.3322.1|Name=mRNA_E-fasciculatus_F_contig1461.3322.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=325bp
CCPGTAHSLRVRVARRKLSCRQMSARASRLRLEEELRNILEQEEKLDGEV
NQLLQAKAAATGPAASEEVTPAVALSNGHPAPKAGAAATGAAPTEVGEGA
DAKAPQDIDNGAVVVVAAGGAAAAEGEEGLAQCLVELSGSVPDFPGLEEK
AGALLAQIEDGHGMAERVSRSVRRLDDIQMRVQRALALVEDVINLRGCAE
GVRAAVQAGDLAEAATYVRRFREIDAGALADSGEMVDMDEAVRGLSSAVL
ERFETAVLDMDEPGIAAACPLLAPLGLATRGQELYLGFARRALEAELEAG
AGDGSLPATQRLPAIYNTSAAFLRR
back to top

mRNA from alignment at E-fasciculatus_F_contig1461:12990..17014+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1461.3322.1 ID=mRNA_E-fasciculatus_F_contig1461.3322.1|Name=mRNA_E-fasciculatus_F_contig1461.3322.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4025bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1461:12990..17014+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGTTGCCCTGGCACCGCACACTCACTTCGTGTTCGTGTTGCACGTCGCAA
GCTGAGCTGTCGACAAATGTCAGCTAGAGCATCAAGGCTCCGGCTCGAGG
AAGAGCTCAGGAATATCTTGGAGCAGGAGGAAAAGCTCGATGGGGAAGTG
AATCAGCTCCTGCAGGTACTGCTGTATGTGGACGTCTCTCGTCTCCTTTT
GTGGATTGTTCGACGCAAGCTGGATTGGTGTTGTTCCGCGCAGCAGCAGC
AAGGCGCAGGTTTAGTAGCGTGCAACCCAGACTGCGGGCATGTGATTGAA
GTATTGTAACGCGAAGCGTGCGAGCGAACCCTGTTTGGCCATTCACGTGT
TCGCCTCTCAAGCTGGGCCCTCTTCCAATTGCATCCTCAACCACCGCCCC
TGGCCTAGCAGACGCCCGAAATAGGTGAATCCCCCCGCACGCACGTCGGG
TTCCGTCTCCACCTCCCAACACGAGAGCTTCCTGTACCTATCTCGCTTAG
TCCAGACGCATGGCGCCCCAGGAGATGCTCGTTGATTGGCGCATCGTATG
TCACGACTTCACAGATGGTTAGGCTGTCTCTGGGTTCAGATTTGCAGGCC
CACGCCCGGCACCGCGCTACGCATGATGTAGGAGTGCGTCGCATCAGAGC
GCTTTTAGCTTTTAGTCCCTCATTTCCGAGAAAGCACCCACCAGCAGTCC
ACTCTTACAATAGCCTCGGCCTTTTATCTACATACGCATTGTACGATGGG
CATGCATGGTCCAAATCACATAGAGGAGAAAAGCCCTTGCTCGTGCAAGC
AGCGAACCCGCTCATTTTGCGAGTGCGCGGCATTGCTCGTGCATCCATGA
GTTGCAAGTGTGTCGCACACGAAACACCGCCGGGTGTCGTGGTTTGGTCT
ACCGCCTTGGAGGGCGAAGGAACAAAAGCCTCGGGGATTCCCCGCATTCC
TCTGTATGCAACCGCCAGATATCGTCGCAGACTGTTTGAATTAAGTTATC
GCTCGCGAGGGTGGCGATTGTCATTGCAGTGCAACCATTTTTCGAAGGAG
CTGGCGCATGCCGTGCAATGGTGGGAATAGCTGTGTAGTTCAGCAGTATA
TGCTTAACAAGGAAGTGAAGCACTGCTATCAAGCAGAAAATTGGCATCTC
TCTCAACAACGCCCCGTGCCTAGAACCCTTGCAGCAGTGAAAGCGTCTAA
CCGCTGTCGCTTTTCGTACAACAGACGTCGCGAACATTCATGGCCTTCTC
CGCCGACCGTGATGGCATCGCGCCGTGAGCGATACGAACACAAGCACACC
TTGCTTTGTGTTCGAGATGGTTTTGGGAGCTGGAGTTGAAAAGTGGCCGC
TTTTGGTTGTCCTCTCTCTGCCCCGCTCGACACGATGGTATTCACCTCCC
TACCCCGTACGACTGGCGCTCGTCCAACTTGCGGCCGCTGAGAGAGGCGA
ATACGCTACCAGAGCCCATGCACACACCCAAACCGACACATGCTGGCTGT
TTTGTGCCGCCGACATGATGGCTACCACATGTATCATACCACGTCAACAG
CGCACGCGCGCCCAGTATAATGCCCTGGTATCGTCCTGCCCATACGACCA
GACTTGTTCTCTCAATTCTCGGCTGATCGAAAAAGCGTTTGCAATTGTAT
ATAGAAGACACCAAACCTAAACGAACGTGTACACACACGCGCGCGTGCCC
GTTGCAGGCAAAGGCCGCGGCCACAGGCCCGGCCGCTTCAGAAGAAGTTA
CTCCGGCGGTGGCACTGTCGAACGGTCACCCCGCCCCCAAAGCTGGCGCA
GCAGCGACAGGAGCAGCACCGACGGAGGTTGGGGAGGGGGCAGACGCCAA
GGCTCCTCAGGATATAGATAACGGAGCGGTTGTTGTTGTTGCCGCCGGCG
GGGCGGCGGCGGCGGAGGGGGAGGAGGGCCTGGCGCAGTGTCTTGTGGAG
CTCTCCGGGAGCGTTCCGGACTTTCCGGGCTTGGAGGAGAAGGCCGGCGC
TTTGCTGGTGAGGAAGAAGGGCCAAATCCACAGTGGCAGCATCATAGGCG
GCCCGTGTATTTTATTTGGGGGGGCTCTGCGTGTTAGCACCCTCTCATCA
AGTGCTGGTTGAACACCCGCCCGTGCTCAAGGCGGGACGAATTGAAGGGA
TGTGGGGAGGTGGGCTTTGCCGTTGAGAAGCGCAGGGGTTTTCATGGCAC
GTGCAGGCGCTACATTGAAGCATCCCAACAAGTGGCTGGGGAACAACAGC
AGGGGCCAAAGATTCAAATCGATCTACAACCGCTGTCGGATGTTAGCTGT
TGCTTTTGACAAGCGTGATAACCTTGATGAAAGCGGAGATTTCGATAATG
ATGATGACGTCAGCGCTGTTGCTTCGCGTTCTTGGGGGCGCTCAGGCGCA
AATAGAGGATGGGCACGGGATGGCGGAGCGCGTGAGCCGATCCGTGAGGC
GGCTGGACGACATCCAGATGCGGGTACAGCGCGCCTTGGCGCTCGTGGAA
GACGTCATCAATCTCAGGGGGTGCGCAGAGGTGAGCCGGTTGTTGAGGGC
GATGGTGTGTGGGGTTCAGGTTTTAGTCTCAAGAACAGGAAGGCCGTGTC
TCGCATGGTCCGGGGATCGGTCGTACAGGAACTACGCAAGCTTAATACTG
TTCCACATCGCGCCCCCTCTTCAATCCCCTGTCTGATGCGGCCTCTTGTA
ATAGTTTACCCCCCTTGGCGGCAATTTAACCGGCTTTGCTGCGTTCCGTC
CTCGTGGGGATGGGATGGGCAATCAGTGACCCGACAACAACTGCGCGCAA
GCTACTCTAGCTCACACGCATTCCCCATATACGGTTACTTGGGCGCCTTC
CCAGTTTCTGTGTTTTTGCTCCTTCTGAGTCTCCTCTTATTTATTATGTC
TATCTATTTCATCGCCCAGCAGAGGCTGACAAGAGAATCCGTTGCACACA
CGTCACATGACTCACCTCACGACACAAGCCGCCCTTGGCTAAACTACCCT
GCGCACTGTGGCGCGCGCGCGCGTTTTATGCGCACAGGGAGTGCGCGCGG
CCGTCCAAGCCGGCGACCTTGCGGAGGCCGCCACTTACGTCCGCCGGTTC
CGGGAGATCGACGCGGGGGCTCTGGCTGACAGCGGCGAGATGGTGGACAT
GGACGAGGCCGTCAGGGGGTGAGAGAGCTTGATTTGATTAGTAGTGGCCA
GATTTTTGTCGTGTCCTCCCAACCCGCATGGCGGCGTGGTAGCCGTGCCG
CTCGTGCTCGAAGTTATGATGTCGTGGCGACTCTGGCCGTTTTGGTGAAT
GGGTTGTTGAAGAATATGTTGGAGGGGCGAGTTTTTTTACCCTCTCCAGT
ACGGCGTACCGCTCGATAGCATGATGCCCGTGTATCTTTTTTCTGGTGTG
GTCTGCATTGTTTTCATTGGTGTATGCGTGTTTGATGACAGAGAAGAAGG
TGTTGCATGCTTTTGCAGTGGTTGTGTTGTGCTCCCCTTTTTTCGTGTCG
CACTTGTAGTATACAGTAGTTAGCAGCACCGCTTATTCTAGCCAATCTGT
TGGCGTCGCTTGCGGGAACTCTTGAACAGGCGCTCATCTGTGTCGACAAA
GATAGATCACGTTTGCCCCAAGCGACTGTCATGCGCTATCCGTCGGTCTT
CACTCCATCTAGTATTCCGAACAACTCCCAAACTTAGCATGTTCAATGTG
TTGCGTTGGCTGGGCTCGGTTTTTCTCCTCGTGGTCGTCGATTGCCTTTT
TGTGTCATGTTGTCGGCGCTGAACCTTACAGGCTCTCGTCGGCGGTGTTG
GAACGCTTCGAGACGGCCGTGCTGGACATGGACGAGCCGGGGATAGCCGC
GGCCTGTCCCCTGCTGGCCCCCCTTGGCCTGGCCACGCGAGGCCAGGAGC
TGTACCTGGGCTTCGCGCGGCGAGCTCTGGAGGCGGAGCTGGAGGCAGGA
GCCGGCGACGGGTCGCTGCCCGCTACGCAACGCCTTCCTGCGATCTACAA
CACCTCGGCGGCGTTTTTGCGGAGG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1461:12990..17014+

>mRNA_E-fasciculatus_F_contig1461.3322.1 ID=mRNA_E-fasciculatus_F_contig1461.3322.1|Name=mRNA_E-fasciculatus_F_contig1461.3322.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1950bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1461:12990..17014+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGTTGCCCTGGCACCGCACACTCACTTCGTGTTCGTGTTGCACGTCGCAA
GCTGAGCTGTCGACAAATGTCAGCTAGAGCATCAAGGCTCCGGCTCGAGG
AAGAGCTCAGGAATATCTTGGAGCAGGAGGAAAAGCTCGATGGGGAAGTG
AATCAGCTCCTGCAGTGTTGCCCTGGCACCGCACACTCACTTCGTGTTCG
TGTTGCACGTCGCAAGCTGAGCTGTCGACAAATGTCAGCTAGAGCATCAA
GGCTCCGGCTCGAGGAAGAGCTCAGGAATATCTTGGAGCAGGAGGAAAAG
CTCGATGGGGAAGTGAATCAGCTCCTGCAGGCAAAGGCCGCGGCCACAGG
CCCGGCCGCTTCAGAAGAAGTTACTCCGGCGGTGGCACTGTCGAACGGTC
ACCCCGCCCCCAAAGCTGGCGCAGCAGCGACAGGAGCAGCACCGACGGAG
GTTGGGGAGGGGGCAGACGCCAAGGCTCCTCAGGATATAGATAACGGAGC
GGTTGTTGTTGTTGCCGCCGGCGGGGCGGCGGCGGCGGAGGGGGAGGAGG
GCCTGGCGCAGTGTCTTGTGGAGCTCTCCGGGAGCGTTCCGGACTTTCCG
GGCTTGGAGGAGAAGGCCGGCGCTTTGCTGGCAAAGGCCGCGGCCACAGG
CCCGGCCGCTTCAGAAGAAGTTACTCCGGCGGTGGCACTGTCGAACGGTC
ACCCCGCCCCCAAAGCTGGCGCAGCAGCGACAGGAGCAGCACCGACGGAG
GTTGGGGAGGGGGCAGACGCCAAGGCTCCTCAGGATATAGATAACGGAGC
GGTTGTTGTTGTTGCCGCCGGCGGGGCGGCGGCGGCGGAGGGGGAGGAGG
GCCTGGCGCAGTGTCTTGTGGAGCTCTCCGGGAGCGTTCCGGACTTTCCG
GGCTTGGAGGAGAAGGCCGGCGCTTTGCTGGCGCAAATAGAGGATGGGCA
CGGGATGGCGGAGCGCGTGAGCCGATCCGTGAGGCGGCTGGACGACATCC
AGATGCGGGTACAGCGCGCCTTGGCGCTCGTGGAAGACGTCATCAATCTC
AGGGGGTGCGCAGAGGCGCAAATAGAGGATGGGCACGGGATGGCGGAGCG
CGTGAGCCGATCCGTGAGGCGGCTGGACGACATCCAGATGCGGGTACAGC
GCGCCTTGGCGCTCGTGGAAGACGTCATCAATCTCAGGGGGTGCGCAGAG
GGAGTGCGCGCGGCCGTCCAAGCCGGCGACCTTGCGGAGGCCGCCACTTA
CGTCCGCCGGTTCCGGGAGATCGACGCGGGGGCTCTGGCTGACAGCGGCG
AGATGGTGGACATGGACGAGGCCGTCAGGGGGGAGTGCGCGCGGCCGTCC
AAGCCGGCGACCTTGCGGAGGCCGCCACTTACGTCCGCCGGTTCCGGGAG
ATCGACGCGGGGGCTCTGGCTGACAGCGGCGAGATGGTGGACATGGACGA
GGCCGTCAGGGGGCTCTCGTCGGCGGTGTTGGAACGCTTCGAGACGGCCG
TGCTGGACATGGACGAGCCGGGGATAGCCGCGGCCTGTCCCCTGCTGGCC
CCCCTTGGCCTGGCCACGCGAGGCCAGGAGCTGTACCTGGGCTTCGCGCG
GCGAGCTCTGGAGGCGGAGCTGGAGGCAGGAGCCGGCGACGGGTCGCTGC
CCGCTACGCAACGCCTTCCTGCGATCTACAACACCTCGGCGGCGTTTTTG
CGGAGGGCTCTCGTCGGCGGTGTTGGAACGCTTCGAGACGGCCGTGCTGG
ACATGGACGAGCCGGGGATAGCCGCGGCCTGTCCCCTGCTGGCCCCCCTT
GGCCTGGCCACGCGAGGCCAGGAGCTGTACCTGGGCTTCGCGCGGCGAGC
TCTGGAGGCGGAGCTGGAGGCAGGAGCCGGCGACGGGTCGCTGCCCGCTA
CGCAACGCCTTCCTGCGATCTACAACACCTCGGCGGCGTTTTTGCGGAGG
back to top