mRNA_E-fasciculatus_F_contig14608.3319.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14608.3319.1 vs. uniprot
Match: D8LSJ2_ECTSI (Sulfate_transp domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSJ2_ECTSI) HSP 1 Score: 438 bits (1126), Expect = 6.280e-143 Identity = 270/409 (66.01%), Postives = 277/409 (67.73%), Query Frame = 1
Query: 40 SQVPTVMTARVKASTVMRTFEERVILKAHQEQTVVLELQGYIFFGSAVKILSDVKDRIVWGTDPPPAPNAGAPATGIFGNVYDDSNYSTKNVGHPYQQXXXXXXPYLETAALVKPGGGGEGTGTGGAMNPRGDILSPVFNRSGAVYRSSPATAXXXXXXXXXTSVLPESSPLRWRTPRQARSQSLREHTSTSSQXXXXXXXXXXXXPSPLAQSLGRTRSAGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKFSVSARETTGYGAMEEGGXXXXXXXXXXXXXXXXXAGVRVRRPRGASLGEEPRVGEGAVQAYMSLWANGGGGSLVDSPGLTGMTGGGGDSSPGFSGRMGRSSSVVSLLPASEERTRRVILDFSNV 1266
+QVPTVMTARVKASTVMRTFEERVILKAHQEQTVVLELQGYIFFGSAVKILSDVKDRIVWGTDPPP PNAGAPATGIFGNVYDDSN ST+ VG+P QQ YLETAALVKP EG GAMNPRGDILSPVFN+SGA YRSS ATA +SVLP SSPL WR+PRQAR QSLREHTSTSSQ SPLAQSL RTRS G T A FSV ARETTGYGAMEEGG AGVRVRRPRG SLGEEPRVGEGAVQAYMSLWANGGG SL DSPGLTGMTGGG DSSPGFSGRM RSSSVVSLLPAS+ERTRRVILDFSNV
Sbjct: 462 AQVPTVMTARVKASTVMRTFEERVILKAHQEQTVVLELQGYIFFGSAVKILSDVKDRIVWGTDPPPTPNAGAPATGIFGNVYDDSNLSTRTVGNPQQQQS-----YLETAALVKPSS--EGIIAAGAMNPRGDILSPVFNKSGAAYRSSSATAAAEAPAA--SSVLPGSSPLHWRSPRQARRQSLREHTSTSSQQQGGASSQGIS--SPLAQSLARTRSVGGTTTATSTGVPGAGGGRGRPFHRAGGLLPGASEQQETEKQQPAVLANASSRHYGGSGG---ANFSVPARETTGYGAMEEGGAGGDGGVGSSGRAT---AGVRVRRPRGTSLGEEPRVGEGAVQAYMSLWANGGG-SLADSPGLTGMTGGG-DSSPGFSGRMARSSSVVSLLPASDERTRRVILDFSNV 851
BLAST of mRNA_E-fasciculatus_F_contig14608.3319.1 vs. uniprot
Match: D8LSJ4_ECTSI (Sulfate_transp domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSJ4_ECTSI) HSP 1 Score: 432 bits (1110), Expect = 5.840e-141 Identity = 278/409 (67.97%), Postives = 284/409 (69.44%), Query Frame = 1
Query: 40 SQVPTVMTARVKASTVMRTFEERVILKAHQEQTVVLELQGYIFFGSAVKILSDVKDRIVWGTDPPPAPNAGAPATGIFGNVYDDSNYSTKNVGHPYQQXXXXXXPYLETAALVKPGGGGEGTGTGGAMNPRGDILSPVFNRSGAVYRSSPATAXXXXXXXXXTSVLPESSPLRWRTPRQARSQSLREHTSTSSQXXXXXXXXXXXXPSPLAQSLGRTRSAGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKFSVSARETTGYGAMEEGGXXXXXXXXXXXXXXXXXAGVRVRRPRGASLGEEPRVGEGAVQAYMSLWANGGGGSLVDSPGLTGMTGGGGDSSPGFSGRMGRSSSVVSLLPASEERTRRVILDFSNV 1266
+QVPTVMTARVKASTVMRTFEERVILKAHQEQTVVLELQGYIFFGSAVKILSDVKDRIVWGTDPPP PNAGAPATGIFGNVYDDSN+ST+ VG+P QQ YLETAALVKP EGT GAMNPRGDILSPVFNRSGAVYRSS + XXXXXXXXX SVLP SSPL WR+P ARSQSLREHTSTSSQ SPLAQSL RTRS G T A FSV ARETTGYGAMEEGG AGVRVRRPRG SLGEEPRVGEGAVQAYMSLWANGGG S DSPGLTGMTGGG DSSPGFSGRM RSSSVVSLLPASEERTRRVILDFSNV
Sbjct: 427 AQVPTVMTARVKASTVMRTFEERVILKAHQEQTVVLELQGYIFFGSAVKILSDVKDRIVWGTDPPPTPNAGAPATGIFGNVYDDSNHSTRTVGNPQQQQS-----YLETAALVKPSS--EGTIAAGAMNPRGDILSPVFNRSGAVYRSS--SXXXXXXXXXXXSVLPGSSPLHWRSP--ARSQSLREHTSTSSQQQGEPSSQGIS--SPLAQSLARTRSVGGTTTATSTGVPGAGGGRGRPFHRAGGLLPGASEQQETEKQQPAVLANESSRHDGGSGG---ANFSVPARETTGYGAMEEGGAGGDGGVGSSGRAT---AGVRVRRPRGTSLGEEPRVGEGAVQAYMSLWANGGG-SFADSPGLTGMTGGG-DSSPGFSGRMARSSSVVSLLPASEERTRRVILDFSNV 814
BLAST of mRNA_E-fasciculatus_F_contig14608.3319.1 vs. uniprot
Match: A0A6H5KE91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE91_9PHAE) HSP 1 Score: 402 bits (1032), Expect = 1.880e-129 Identity = 274/419 (65.39%), Postives = 282/419 (67.30%), Query Frame = 1
Query: 40 SQVPTVMTARVKASTVMRTFEERVILKAHQEQTVVLELQGYIFFGSAVKILSDVKDRIVWGTDPPPAPNAGAPATGIFGNVYDDSNYSTKNVGHPYQQXXXXXXPYLETAALVKPGGGGEGTGTGGAMNPRGDILSPVFNRSGAVYRSSPATAXXXXXXXXXTS---------VLPESSPLRWRTPRQARSQSLREHTSTSSQXXXXXXXXXXXXPSPLAQSLGRTRSAGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKFSVSARETTGYGAMEEGGXXXXXXXXXXXXXXXXXAGVRVRRPRGASLGEEPRVGEGAVQAYMSLWANGGGGSLVDSPGLTGMTGGGGDSSPGFSGRMGRSSSVVSLLPASEERTRRVILDFSNVV 1269
+QVPTVMTARVKASTVMRTFEERVILKAHQEQTVVLELQGYIFFGSAVKILSDVKDRIVWGTDPPP P GAPATG++GNVYDDSN ST+ VG+P +Q YLETAAL KP G EGT AMNPRGDILSPVFNRSGAVYRSS XXXXXXXXX VLP SSP RWR+PR+ARSQSLREHTSTS XXXXX SPLAQSL RTRS G T X A FSV RETTGYGAMEEGG XXXX GVRVR RGASLGEE VGEGAVQAYMSLWANGGG S DSPGLTGMTGGG DSSPGFSGRM RS SV SLLPASEERTRRVILDFSNVV
Sbjct: 41 AQVPTVMTARVKASTVMRTFEERVILKAHQEQTVVLELQGYIFFGSAVKILSDVKDRIVWGTDPPPTPYTGAPATGLYGNVYDDSNRSTRTVGNPQKQLQQQQS-YLETAALFKPSG--EGTIAASAMNPRGDILSPVFNRSGAVYRSSSXXXXXXXXXXXXXXXXXXXXXXXVLPGSSPRRWRSPREARSQSLREHTSTSXXXXXXXSSQGIS--SPLAQSLARTRSVGGTTTTXSTGIPGAGGGRGRPFHRAGGLLPGASEQQETEKQQPAVLANGSSRHDGGSGG---ANFSVPTRETTGYGAMEEGGAGGDGGVXXXXGGA---TGVRVRHSRGASLGEEQGVGEGAVQAYMSLWANGGG-SFADSPGLTGMTGGG-DSSPGFSGRMARSCSVASLLPASEERTRRVILDFSNVV 446
BLAST of mRNA_E-fasciculatus_F_contig14608.3319.1 vs. uniprot
Match: D8LSJ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSJ0_ECTSI) HSP 1 Score: 358 bits (918), Expect = 2.250e-109 Identity = 257/413 (62.23%), Postives = 266/413 (64.41%), Query Frame = 1
Query: 40 SQVPTVMTARVKASTVMRTFEERVILKAHQEQTVVLELQGYIFFGSAVKILSDVKDRIVWGTDPPPAPNAGAPATGIFGNVYDDSNYSTKNVGHPYQQXXXXXXP---YLETAALVKPGGGGEGTGTGGAMNPRGDILSPVFNRSGAVYRSSPATAXXXXXXXXXTSVLPESSPLRWRTPRQARSQSLREHTSTSSQXXXXXXXXXXXXPSPLAQSLGRTRSAGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKFSVSARETTGYGAMEEGGXXXXXXXXXXXXXXXXXAGVRVRRPRGASLGEEPRVGEGAVQAYMSLWANGGGGSLVDSPGLTGMTGGGGDSSPGFSGRMGRSSSVVSLLPASEERTRRVILDFSNVV 1269
+QVP VM RVKASTVMRTFEERVILKAHQEQTVVLELQGYIFFGSAV+ILSDVKD IVWGTD P PNAGAPATGIFGNVYDDSN+ST++VGHP XXXXXX YL+ AA VKP G EGT GAM+P GDILSPVFNRSGAVYRSS ATA +SVLP SP+ STSSQ SPLAQSL RTRSAG T A FSV RETTGYGAMEEGG XXXXXXXXXXXX AGVRVRR RGASLGEEPRVGEGAVQ YMS WANGGG S VD PGLTG TGGG DSSP FSGR RS SV SLLPASEERTRRVILDFSNVV
Sbjct: 449 AQVPAVMKTRVKASTVMRTFEERVILKAHQEQTVVLELQGYIFFGSAVQILSDVKDGIVWGTDLPATPNAGAPATGIFGNVYDDSNHSTRSVGHPXXXXXXXXXXXXTYLKAAAHVKPSG--EGTTAVGAMSPCGDILSPVFNRSGAVYRSSSATAAVAAP----SSVLPGPSPM-----------------STSSQQQGGASPQGRS--SPLAQSLARTRSAGGTTTTTSTGVYGADGGRGRLFHRAGGLLPGASEHQQAEQEPLAVLANASSRHDGGSGG---ANFSVPTRETTGYGAMEEGGAGGXXXXXXXXXXXXT-AGVRVRRLRGASLGEEPRVGEGAVQEYMSPWANGGG-SFVDCPGLTGRTGGG-DSSPSFSGRGARSPSVASLLPASEERTRRVILDFSNVV 830
BLAST of mRNA_E-fasciculatus_F_contig14608.3319.1 vs. uniprot
Match: D7FMW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMW9_ECTSI) HSP 1 Score: 211 bits (538), Expect = 5.230e-58 Identity = 195/410 (47.56%), Postives = 198/410 (48.29%), Query Frame = 1
Query: 40 SQVPTVMTARVKASTVMRTFEERVILKAHQEQTVVLELQGYIFFGSAVKILSDVKDRIVWGTDPPPAPNAGAPATGIFGNVYDDSNYSTKNVGHPYQQXXXXXXPYLETAALVKPGGGGEGTGTGGAMNPRGDILSPVFNRSGAVYRSSPATAXXXXXXXXXTSVLPESSPLRWRTPRQARSQSLREHTSTSSQXXXXXXXXXXXXPSPLAQSLGRTRSAGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKFSVSARETTGYGAMEEGGXXXXXXXXXXXXXXXXXAGVRVRRPRGASLGEEPRVGEGAVQAYMSLWANGGGGSLVDSPGLTGMTGGGGDSSPGFSGRMGRSSSVVSLLPASEERTRRVILDFSNVV 1269
+QVPTVM ARVKASTVMRTFEERVILKAHQEQ VVLELQ GEGT G +NPRGDILSPVFNRSGAVYRSS ATAXXXXXXXXX P W SSQ SPLA SL RTRS G T A FSV A+ETT Y AMEEGG XXXXXXXXXX GVR RRPRGASLGEE RVGEGAVQ YMSLWANGGG S VDSPGLTG TGGG DSSPGFSGR R SVVSLLPASEERTRRVILDFSNVV
Sbjct: 41 AQVPTVMKARVKASTVMRTFEERVILKAHQEQAVVLELQP-----------------------------------------------------------------------------SGEGTTAAGVINPRGDILSPVFNRSGAVYRSSSATAXXXXXXXXXXXXXPM-----WTX--------XXXXGGASSQGIS----------SPLAHSLARTRSVGGTCTGVPGAGGGRGRPFHRAGGLLPGASERLEAEQESQAVLANDSTRHDGGRGG-------AHFSVPAQETTDYEAMEEGGAGGDXXXXXXXXXXAA-VGVRARRPRGASLGEEQRVGEGAVQEYMSLWANGGG-SFVDSPGLTGRTGGG-DSSPGFSGRETRCPSVVSLLPASEERTRRVILDFSNVV 340
BLAST of mRNA_E-fasciculatus_F_contig14608.3319.1 vs. uniprot
Match: A0A4D9DC98_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DC98_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 7.720e-9 Identity = 44/128 (34.38%), Postives = 71/128 (55.47%), Query Frame = 1
Query: 40 SQVPTVMTARVKASTVMRTFEERVILKAHQEQTVVLELQGYIFFGSAVKILSDVKDRIVWGTDPPPAPNAGAPATGIFGNVYDDSNYSTKNVGH-----PYQQXXXXXXPYLETAALVKPGGGGEGTG 408
++ P V+ RV+ S+V+RTFEER IL A+ ++ + L L+GY+FFGSAVKIL+++K+ ++ G +G P TG ++ + ++G P P+ T+A + G GE TG
Sbjct: 459 AEAPVVLHPRVRHSSVVRTFEERAILSANTDKIITLSLRGYVFFGSAVKILNEIKENVLAGHA------SGLPETG----EREEEEEAEADIGGEGGVGPDGAEAMGPLPFSSTSAAMLFRGSGERTG 576
BLAST of mRNA_E-fasciculatus_F_contig14608.3319.1 vs. uniprot
Match: W7TKR3_9STRA (Sulfate permease family n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TKR3_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 9.510e-9 Identity = 30/61 (49.18%), Postives = 48/61 (78.69%), Query Frame = 1
Query: 40 SQVPTVMTARVKASTVMRTFEERVILKAHQEQTVVLELQGYIFFGSAVKILSDVKDRIVWG 222
++ P V+ RV+ S+V+RTFEER IL A+ ++ + L L+GY+FFGSAVKIL+++K+ ++ G
Sbjct: 487 AEAPVVLHPRVRHSSVVRTFEERAILSANTDKIITLSLRGYVFFGSAVKILNEIKENVLAG 547
BLAST of mRNA_E-fasciculatus_F_contig14608.3319.1 vs. uniprot
Match: A0A7S3GZR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GZR3_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 1.790e-7 Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 1
Query: 40 SQVPTVMTARVKASTVMRTFEERVILKAHQEQTVVLELQGYIFFGSAVKILSDVKDRI 213
S + +V A ++ STV+RTFEER L AH+ + V + L+GYIFFGSAVKIL DVK +
Sbjct: 451 SSLQSVSCASLQTSTVIRTFEERAALIAHRGKVVTITLKGYIFFGSAVKILEDVKSHV 508
BLAST of mRNA_E-fasciculatus_F_contig14608.3319.1 vs. uniprot
Match: A0A7R9UBE4_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UBE4_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 2.670e-6 Identity = 52/155 (33.55%), Postives = 67/155 (43.23%), Query Frame = 1
Query: 40 SQVPTVMTARVKASTVMRTFEERVILKA--HQEQTVVLELQGYIFFGSAVKILSDVKDRIVWGTDPPPAPNAGAPATGIFGNVYDDSNYSTKNVGHPYQQXXXXXXPYLETAALVKPGGGGEGTGTGGAMNPRGDILSPVFNRSGAVYRSSPATA 498
+QVP V ++ + S + RTF+ERVIL H + LQGYIFFGSAV +L+DVK RI W P+ G + GI + V P P L T T G G PV+NR G + SP+ A
Sbjct: 434 AQVPGVKSSFRRTSLITRTFQERVILDTAMHDGIMQIFSLQGYIFFGSAVNLLADVKSRIRW-------PDGGPASLGI------------ERVDSPPTVPKVPSSPSLYTEP------------TDGKFATAGIAAMPVYNRGGG--KGSPSKA 555
BLAST of mRNA_E-fasciculatus_F_contig14608.3319.1 vs. uniprot
Match: A0A7S1UB31_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UB31_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 3.490e-6 Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 1
Query: 25 FFFFCSQVPTVMTARVKASTVMRTFEERVILK--AHQEQTVVLELQGYIFFGSAVKILSDVKDRI 213
F F +++PTV T + S RTF+ER+IL H+ Q + +LQGYIFFGSAV +L+DVK+R+
Sbjct: 429 FTFGYARLPTVKTNIKRNSLTTRTFQERIILDKATHEGQMQIFQLQGYIFFGSAVNLLADVKERV 493 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14608.3319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14608.3319.1 >prot_E-fasciculatus_F_contig14608.3319.1 ID=prot_E-fasciculatus_F_contig14608.3319.1|Name=mRNA_E-fasciculatus_F_contig14608.3319.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=428bp VIHAISFIFFFFCSQVPTVMTARVKASTVMRTFEERVILKAHQEQTVVLEback to top mRNA from alignment at E-fasciculatus_F_contig14608:681..2890- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14608.3319.1 ID=mRNA_E-fasciculatus_F_contig14608.3319.1|Name=mRNA_E-fasciculatus_F_contig14608.3319.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2210bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14608:681..2890- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14608:681..2890- >mRNA_E-fasciculatus_F_contig14608.3319.1 ID=mRNA_E-fasciculatus_F_contig14608.3319.1|Name=mRNA_E-fasciculatus_F_contig14608.3319.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2568bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14608:681..2890- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |