prot_E-fasciculatus_F_contig146.3314.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig146.3314.1
Unique Nameprot_E-fasciculatus_F_contig146.3314.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length308
Homology
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BLAST of mRNA_E-fasciculatus_F_contig146.3314.1 vs. uniprot
Match: D8LPS0_ECTSI (Hypothetical leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPS0_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 2.760e-42
Identity = 88/93 (94.62%), Postives = 91/93 (97.85%), Query Frame = 0 
Query:  150 QSSVNKVGSHIDAMGLTAAFKGMDPSGVAQFDASSMVAWREKQTLERMKSEEIERAQDRFTDQEGLTSLDISGAQGVGDSGVAVLTAQCRRLQ 242
            +S++N VG HIDAMGLTAAFKGMDPSGVAQFDASSMVAWREKQTLERMKSEEIERAQDRFTDQEGLTSLDISGAQGVGDSGVAVLTAQCRRLQ
Sbjct:    8 KSNIN-VGCHIDAMGLTAAFKGMDPSGVAQFDASSMVAWREKQTLERMKSEEIERAQDRFTDQEGLTSLDISGAQGVGDSGVAVLTAQCRRLQ 99
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig146.3314.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPS0_ECTSI2.760e-4294.62Hypothetical leucine rich repeat calmodulin bindin... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 238..263
e-value: 0.0013
score: 28.1
coord: 290..306
e-value: 700.0
score: 0.1
coord: 212..237
e-value: 690.0
score: 0.2
coord: 264..289
e-value: 1.6
score: 17.8
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 215..232
e-value: 0.58
score: 10.3
coord: 263..285
e-value: 0.077
score: 13.1
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 192..307
e-value: 9.4E-23
score: 82.2
NoneNo IPR availablePANTHERPTHR13382:SF6SCF E3 UBIQUITIN LIGASE COMPLEX F-BOX PROTEIN GRR1coord: 213..303
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 213..303
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 214..303

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig146contigE-fasciculatus_F_contig146:30513..33729 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig146.3314.1mRNA_E-fasciculatus_F_contig146.3314.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig146 30513..33729 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig146.3314.1 ID=prot_E-fasciculatus_F_contig146.3314.1|Name=mRNA_E-fasciculatus_F_contig146.3314.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=308bp
MATDLNVLTRKQSMAPLQSSPRAPVAAFGRETPDGSCDDISNGGERGGSP
EAHEPSVTFSAENGSGLTGSAPADAVAATLAGVAESVKSAIQAYEHTTSL
PYDSVPAEVCRARDGTKSIDLAAWSLLVDDAALRCIAAGDRDRIDKLARQ
SSVNKVGSHIDAMGLTAAFKGMDPSGVAQFDASSMVAWREKQTLERMKSE
EIERAQDRFTDQEGLTSLDISGAQGVGDSGVAVLTAQCRRLQSLSMSGAF
RVTDVAIRSLAVNCTGLTRLNLSGCLGISGPGLAAVGECCPKLVHLDLSD
CKQASST*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt
IPR006553Leu-rich_rpt_Cys-con_subtyp