mRNA_E-fasciculatus_F_contig146.3314.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig146.3314.1
Unique NamemRNA_E-fasciculatus_F_contig146.3314.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig146.3314.1 vs. uniprot
Match: D8LPS0_ECTSI (Hypothetical leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPS0_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 2.760e-42
Identity = 88/93 (94.62%), Postives = 91/93 (97.85%), Query Frame = 1 
Query:  448 QSSVNKVGSHIDAMGLTAAFKGMDPSGVAQFDASSMVAWREKQTLERMKSEEIERAQDRFTDQEGLTSLDISGAQGVGDSGVAVLTAQCRRLQ 726
            +S++N VG HIDAMGLTAAFKGMDPSGVAQFDASSMVAWREKQTLERMKSEEIERAQDRFTDQEGLTSLDISGAQGVGDSGVAVLTAQCRRLQ
Sbjct:    8 KSNIN-VGCHIDAMGLTAAFKGMDPSGVAQFDASSMVAWREKQTLERMKSEEIERAQDRFTDQEGLTSLDISGAQGVGDSGVAVLTAQCRRLQ 99
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig146.3314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPS0_ECTSI2.760e-4294.62Hypothetical leucine rich repeat calmodulin bindin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig146contigE-fasciculatus_F_contig146:30513..33729 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score168.7
Seed ortholog evalue4.3e-39
Seed eggNOG ortholog2880.D8LPS0
KEGG koko:K10268
EggNOG free text desc.modulation by host of viral RNA genome replication
EggNOG OGsKOG1947@1,KOG1947@2759,KOG4341@1,KOG4341@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical leucine rich repeat calmodulin binding protein
Ec32 orthologEc-18_002240.1
Exons5
Model size924
Cds size924
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig146.3314.1prot_E-fasciculatus_F_contig146.3314.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig146 30513..33729 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927946.8771918-CDS-E-fasciculatus_F_contig146:30512..306641622927946.8771918-CDS-E-fasciculatus_F_contig146:30512..30664Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig146 30513..30664 -
1695995761.6620874-CDS-E-fasciculatus_F_contig146:30512..306641695995761.6620874-CDS-E-fasciculatus_F_contig146:30512..30664Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig146 30513..30664 -
1622927946.892847-CDS-E-fasciculatus_F_contig146:31187..313411622927946.892847-CDS-E-fasciculatus_F_contig146:31187..31341Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig146 31188..31341 -
1695995761.685035-CDS-E-fasciculatus_F_contig146:31187..313411695995761.685035-CDS-E-fasciculatus_F_contig146:31187..31341Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig146 31188..31341 -
1622927946.9091074-CDS-E-fasciculatus_F_contig146:32366..325191622927946.9091074-CDS-E-fasciculatus_F_contig146:32366..32519Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig146 32367..32519 -
1695995761.695283-CDS-E-fasciculatus_F_contig146:32366..325191695995761.695283-CDS-E-fasciculatus_F_contig146:32366..32519Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig146 32367..32519 -
1622927946.928834-CDS-E-fasciculatus_F_contig146:32948..331681622927946.928834-CDS-E-fasciculatus_F_contig146:32948..33168Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig146 32949..33168 -
1695995761.706142-CDS-E-fasciculatus_F_contig146:32948..331681695995761.706142-CDS-E-fasciculatus_F_contig146:32948..33168Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig146 32949..33168 -
1622927946.9493866-CDS-E-fasciculatus_F_contig146:33484..337291622927946.9493866-CDS-E-fasciculatus_F_contig146:33484..33729Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig146 33485..33729 -
1695995761.7145114-CDS-E-fasciculatus_F_contig146:33484..337291695995761.7145114-CDS-E-fasciculatus_F_contig146:33484..33729Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig146 33485..33729 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig146.3314.1

>prot_E-fasciculatus_F_contig146.3314.1 ID=prot_E-fasciculatus_F_contig146.3314.1|Name=mRNA_E-fasciculatus_F_contig146.3314.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=308bp
MATDLNVLTRKQSMAPLQSSPRAPVAAFGRETPDGSCDDISNGGERGGSP
EAHEPSVTFSAENGSGLTGSAPADAVAATLAGVAESVKSAIQAYEHTTSL
PYDSVPAEVCRARDGTKSIDLAAWSLLVDDAALRCIAAGDRDRIDKLARQ
SSVNKVGSHIDAMGLTAAFKGMDPSGVAQFDASSMVAWREKQTLERMKSE
EIERAQDRFTDQEGLTSLDISGAQGVGDSGVAVLTAQCRRLQSLSMSGAF
RVTDVAIRSLAVNCTGLTRLNLSGCLGISGPGLAAVGECCPKLVHLDLSD
CKQASST*
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mRNA from alignment at E-fasciculatus_F_contig146:30513..33729-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig146.3314.1 ID=mRNA_E-fasciculatus_F_contig146.3314.1|Name=mRNA_E-fasciculatus_F_contig146.3314.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3217bp|location=Sequence derived from alignment at E-fasciculatus_F_contig146:30513..33729- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGACTGATCTAAACGTTCTTACGAGAAAACAGTCAATGGCCCCGCT
CCAGTCCAGCCCGCGCGCTCCCGTGGCAGCTTTCGGAAGAGAAACTCCAG
ACGGTAGCTGTGATGACATCAGCAACGGCGGCGAGCGTGGTGGCTCCCCG
GAAGCGCACGAGCCAAGCGTCACCTTTTCAGCGGAAAACGGATCAGGGTT
GACCGGCTCTGCACCGGCCGATGCCGTTGCAGCTACCCTCGCCGGGTATG
ATGGGGTGCTGGCATTAAACTGCTACCGGAGTCGGTCGTATATCAGCACT
GAGACTCCTGTTCACCAACATTGAAACCCGCCTGCGATAGTCGGAAGGAT
ACATATATGATTCCACTTCTGAGGCATGGCAGTGGGGTGTTCGAAATTAG
CAACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGACTCAAAACCCACGT
ACGTGCTTTGCAAGACTAGAACGTGGTGTCTAAACGGTTCCTTATGTCGA
AAATAGCCTTTGTTCTTGGCTCATTCCCGTCCACTTCGCGCGCGCATCCA
CCATCTAACAGGGTAGCAGAAAGTGTCAAAAGCGCCATCCAAGCTTACGA
GCACACCACAAGCCTGCCGTACGACAGCGTCCCGGCAGAAGTATGCCGGG
CTAGGGATGGGACCAAGTCCATTGACCTCGCGGCATGGTCGTTGCTCGTG
GATGACGCCGCCTTGAGATGCATAGCAGCGGGAGATCGGGACCGAATCGA
CAAGCTTGCCCGCCAGAGCAGCGTTAACAAGGTAAATGCGTACCCGTCGC
AATTGTCTCTGTCTTCTTGAGACGCATCACCCGCAACACGGCGGGAAAAT
GTGGGTAGGCGACAGAGTTGTGGTCATGCCGTCGGGCTATTTGTCGGTAC
AGTTCTCCGTTGCTCGTGCTTATCGTCGACGCTCTTCATCTGACCAAAAT
CTTGAGCATCTCTCATGGAGAGGAATCTTGGACGCGAATGCATATAAACA
GCACTGTGAAGATCAATATCAACACTGAGTGGGTCTAGCCCCTGGTATGC
GAAGTCCGGCATAACCACGGCACCATGAATTACGACACGGGAGCAATATC
ATAATTCATTGTAAACATCCCTGTCAACTGAACGGACCCCGAGAACTCAC
TCAAGCACTGGTGCCACGATCAACAAACACGGACGAACATACCCTGCGGG
GAACATGTAGGTTGGTAGCCACATTGATGCGATGGGGCTCACAGCCGCGT
TCAAAGGAATGGACCCTTCGGGGGTGGCCCAATTCGACGCTTCTTCCATG
GTGGCCTGGAGGGAAAAGCAGACCCTAGAGCGGATGAAGTCGGAGGAAAT
TGAGCGTGCCCAGGTGATACGTCGGCGTCATGTGTATTGTACGCTTTCCT
TTCTCCCAGCACCCTCCTCAAAACTCCATGAACCCTTAGCATTGGTGTGG
ATACGCCGTATGCGCGGAACAGAGTGTCATTTTAGGGTTAAGAGTTTCGC
CGTAGTGCGAATCCCCTCTCACTCTACCGTTGGGTGTCGAGATAAACCAG
GCGTTCTTGATAAAACACACCATCCATGGTCTGAATCATCTTTACTCGTA
AGTTTGCCAGAAACCCCATGAAATAATGCATCTGGAGAATGCTACGTGTT
TTATTCTGAAATAGCAGAGAGAGGTCGGTATCGTGTACGGTGATCTCTGC
GCTGGAGCTACCCTTTGTCTTGTTTGCTTTTTAGCGGGCGTAATTCATTA
GGAAACACACACACACACACACACACACACACCTGCACAACTTTTCTCAA
CACAGCATATATTAGATTCAGATGAACGTTCAAGATCTTGTCACGACTCT
GTACTTGCACTTGGCCGTGACATGCATTAAAAGATGGATATACCGCGCAG
AGGAAAGCGAGGTTGTGTCCTCCCTCGAATGATACCGAAATCTTTGAGCC
AAAAGGCAGGGCGGACAAAAGTCTCCTTGCAGATAGATGCAAGAAATGTT
GGCACGATGCTTGTCATTGTGGCGCCCGGCAGAAGGAAGGAATGAAGTGC
GATTGCTCTTTCTTGTACAACGCCTCGTGTTGTTTCGAACAAGAGGAACT
TGTCATAAGAGGCGGGGACAAGACCCTGCCGGGCTACTCGTCTCTGTCTG
GTCTATTTTCCACTCCCAAGCGATTACAATAGTTTTTCAGAATTACCTCT
TCTCGGTGTGCCGTGCCCAAAACCCTCTCACTTACCCCATCACAACCACA
TGTAACCCCGATAGAAGGTAGTGAGTTGCTTCGCTCTGCCACATTGTACT
TACGACCAACAACTTTTGATCACGTGCTGGTGCTCGCTGCAACAAAACCA
CCACGGATGGAATCTGGCACGCCTGCAATGCTACACAGGACCGCTTCACG
GACCAAGAAGGCCTCACGTCCCTCGACATTTCAGGAGCGCAGGGGGTGGG
AGACAGCGGGGTCGCCGTGCTGACCGCACAGTGCCGCCGTCTGCAATCCT
TGAGCATGTCCGGTGCATTTCGGGTCACGGACGTTGCCATCCGTGAGGAC
TTTACCGCACCTTGATATTCGCTTGTGTTGGGCGAGGGGGGGAGAGGTCA
CGCATTACGTGCTGAAGCCCTTTCGAACGATTTTACTGTTTGTTAGGCAG
CTTTTCGTGTGATATCTTTGACGCTAGTTCAACATGTGCTCACCTTATTG
TTCCAAATTGGTCGGACTTGGCAAGCGGCAGGGTTGACTTGCACGTGCAA
ACAGTGTGAGCAATTGGTGATGGTAGTCAGAACCATGATATTCGCCAAGC
TTCCGGGTTTCATTGACCGGGTGCAGAAGAACTTTAATACACCAACGCTT
TTGTAGCAATGCCGATCCGGAACGCTGCCTTCTTTACTAAACCCATCAAC
TACATGTCTGATCCGTCCAGCAAACTTAGCGAATTATTGAGGGGTCCTTC
GTTCTATGCTCCCATACCAAACAGCGTGGGGGGGTGTACTCGCTTGCCCT
CTTGCTACATGCTCGCCATGCAGATTGATCCGTCCTTGTTGTTCACATTT
TCCCGTGTGTGTCAGGTTCCCTTGCCGTGAATTGCACCGGCTTAACCCGG
CTCAACCTCAGCGGGTGCCTCGGGATCTCCGGACCTGGACTCGCGGCCGT
GGGAGAGTGCTGCCCGAAACTGGTGCACCTCGATCTATCCGATTGCAAGC
AGGCGAGCAGCACGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig146:30513..33729-

>mRNA_E-fasciculatus_F_contig146.3314.1 ID=mRNA_E-fasciculatus_F_contig146.3314.1|Name=mRNA_E-fasciculatus_F_contig146.3314.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1848bp|location=Sequence derived from alignment at E-fasciculatus_F_contig146:30513..33729- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGACTGATCTAAACGTTCTTACGAGAAAACAGTCAATGGCCCCGCT
CCAGTCCAGCCCGCGCGCTCCCGTGGCAGCTTTCGGAAGAGAAACTCCAG
ACGGTAGCTGTGATGACATCAGCAACGGCGGCGAGCGTGGTGGCTCCCCG
GAAGCGCACGAGCCAAGCGTCACCTTTTCAGCGGAAAACGGATCAGGGTT
GACCGGCTCTGCACCGGCCGATGCCGTTGCAGCTACCCTCGCCGGATGGC
GACTGATCTAAACGTTCTTACGAGAAAACAGTCAATGGCCCCGCTCCAGT
CCAGCCCGCGCGCTCCCGTGGCAGCTTTCGGAAGAGAAACTCCAGACGGT
AGCTGTGATGACATCAGCAACGGCGGCGAGCGTGGTGGCTCCCCGGAAGC
GCACGAGCCAAGCGTCACCTTTTCAGCGGAAAACGGATCAGGGTTGACCG
GCTCTGCACCGGCCGATGCCGTTGCAGCTACCCTCGCCGGGGTAGCAGAA
AGTGTCAAAAGCGCCATCCAAGCTTACGAGCACACCACAAGCCTGCCGTA
CGACAGCGTCCCGGCAGAAGTATGCCGGGCTAGGGATGGGACCAAGTCCA
TTGACCTCGCGGCATGGTCGTTGCTCGTGGATGACGCCGCCTTGAGATGC
ATAGCAGCGGGAGATCGGGACCGAATCGACAAGCTTGCCCGCCAGAGCAG
CGTTAACAAGGGTAGCAGAAAGTGTCAAAAGCGCCATCCAAGCTTACGAG
CACACCACAAGCCTGCCGTACGACAGCGTCCCGGCAGAAGTATGCCGGGC
TAGGGATGGGACCAAGTCCATTGACCTCGCGGCATGGTCGTTGCTCGTGG
ATGACGCCGCCTTGAGATGCATAGCAGCGGGAGATCGGGACCGAATCGAC
AAGCTTGCCCGCCAGAGCAGCGTTAACAAGGTTGGTAGCCACATTGATGC
GATGGGGCTCACAGCCGCGTTCAAAGGAATGGACCCTTCGGGGGTGGCCC
AATTCGACGCTTCTTCCATGGTGGCCTGGAGGGAAAAGCAGACCCTAGAG
CGGATGAAGTCGGAGGAAATTGAGCGTGCCCAGGTTGGTAGCCACATTGA
TGCGATGGGGCTCACAGCCGCGTTCAAAGGAATGGACCCTTCGGGGGTGG
CCCAATTCGACGCTTCTTCCATGGTGGCCTGGAGGGAAAAGCAGACCCTA
GAGCGGATGAAGTCGGAGGAAATTGAGCGTGCCCAGGACCGCTTCACGGA
CCAAGAAGGCCTCACGTCCCTCGACATTTCAGGAGCGCAGGGGGTGGGAG
ACAGCGGGGTCGCCGTGCTGACCGCACAGTGCCGCCGTCTGCAATCCTTG
AGCATGTCCGGTGCATTTCGGGTCACGGACGTTGCCATCCGACCGCTTCA
CGGACCAAGAAGGCCTCACGTCCCTCGACATTTCAGGAGCGCAGGGGGTG
GGAGACAGCGGGGTCGCCGTGCTGACCGCACAGTGCCGCCGTCTGCAATC
CTTGAGCATGTCCGGTGCATTTCGGGTCACGGACGTTGCCATCCGTTCCC
TTGCCGTGAATTGCACCGGCTTAACCCGGCTCAACCTCAGCGGGTGCCTC
GGGATCTCCGGACCTGGACTCGCGGCCGTGGGAGAGTGCTGCCCGAAACT
GGTGCACCTCGATCTATCCGATTGCAAGCAGGCGAGCAGCACGTAGGTTC
CCTTGCCGTGAATTGCACCGGCTTAACCCGGCTCAACCTCAGCGGGTGCC
TCGGGATCTCCGGACCTGGACTCGCGGCCGTGGGAGAGTGCTGCCCGAAA
CTGGTGCACCTCGATCTATCCGATTGCAAGCAGGCGAGCAGCACGTAG
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