mRNA_E-fasciculatus_F_contig14580.3302.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14580.3302.1
Unique NamemRNA_E-fasciculatus_F_contig14580.3302.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14580.3302.1 vs. uniprot
Match: A0A6H5JU08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU08_9PHAE)

HSP 1 Score: 575 bits (1481), Expect = 2.120e-200
Identity = 353/474 (74.47%), Postives = 372/474 (78.48%), Query Frame = 1 
Query:  106 ITPDAVAERRKVSYADRGPDSIIG-----GYQH-LEVHPAATRKESKKNGGSKRAKKSKESKKTGXXXXXXXXXKVRVNKAGGRRLLQASTDPAL-PACASLFVPTGAGDELTGTYEFQGRYSHQRPVYAAENGNRFFATKDEGAMPITWYVIQPEESNSKYFLSLESDVFEPNDLELLQPWVRNNDPTCTSCISKLRMSCSDSTA--APTAXXXXXXXXXXXXXXSHAGNENSTMSXXXXXXXXXXXXXXXAPTDIPSDMTMVDTSAVGGCANLKIDNGEDRAGVYSLSGVDGEGGVVFRNGRPSYAAVGDKRTDVVFSTTMNVCAAGYGVVDADWAAHVGHLPLSATVNDVFLMYVAENVGVDTADDAAAAVATAAIASDNDDCEVPVWLLVADGAESLDDAGENTFLSVSGVDDPSEATSWAKFTPATDTTRPTLVENFWIDVGCANAGEVEEASAAA-DTGDGGEEEQVT 1497
            +T D V  RR V+Y   G   ++G     GY+H LEV PAAT  +SKKNGGSKRAKKS       XXXXXXXXXKVR NK GGRRL QASTD AL PACASLFVPTGAGDELTGTY+FQG YS +RPVYAA NGN+FFA KDE  +P TWYV Q    NS +FLSLES VFEP DLE LQPWVRNNDPTC SCISKL MSCS  TA   PTA       XXXXXXX  A NEN TMS            XXX    +P D TM DTSAVGGCANLKI+NGEDRAGVYSLS VDGEGGVVFRNGRPSYAAVG  RTDVVFST MNVCA+GYGVVDADWA HVG+LP ++TVN VFLMYVAENVGVDTADDAAAA+ATAA +SDND CEVPVWLLVADGAESLD AGENTFLSVSGVDDPSEATSWAKFTPAT TTRPTL ENFWIDVGCA AGEVEEASAAA  TG GGEEEQ T
Sbjct:    1 MTADTVVGRR-VNYGG-GESGLLGAGSSGGYRHHLEVQPAATANQSKKNGGSKRAKKSXXXX-XXXXXXXXXXXKVRANKGGGRRLQQASTDGALLPACASLFVPTGAGDELTGTYDFQGHYSDRRPVYAAANGNKFFA-KDEEGVPTTWYVTQASP-NSTFFLSLESAVFEPADLEDLQPWVRNNDPTCRSCISKLSMSCSALTADAIPTAPETTTPAXXXXXXXXXAENENLTMSTAETVVPPATTPXXXX---LPPDTTMADTSAVGGCANLKINNGEDRAGVYSLSDVDGEGGVVFRNGRPSYAAVGANRTDVVFSTMMNVCASGYGVVDADWANHVGYLPPTSTVNAVFLMYVAENVGVDTADDAAAAIATAAASSDNDGCEVPVWLLVADGAESLDAAGENTFLSVSGVDDPSEATSWAKFTPATSTTRPTLEENFWIDVGCAAAGEVEEASAAAVATGYGGEEEQGT 466
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BLAST of mRNA_E-fasciculatus_F_contig14580.3302.1 vs. uniprot
Match: D7G0N9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0N9_ECTSI)

HSP 1 Score: 565 bits (1457), Expect = 8.070e-197
Identity = 339/478 (70.92%), Postives = 363/478 (75.94%), Query Frame = 1 
Query:  106 ITPDAVAERRKVSYADRGPDSII------GGYQHLEVHPAATRKESKKNGGSKRAKKSKESKKTGXXXXXXXXXKVRVNKAGGRRLLQASTDPAL-PACASLFVPTGAGDELTGTYEFQGRYSHQRPVYAAENGNRFFATKDEGAMPITWYVIQPEESNSKYFLSLESDVFEPNDL----ELLQPWVRNNDPTCTSCISKLRMSCSDSTA--APTAXXXXXXXXXXXXXXSHAGNENSTMSXXXXXXXXXXXXXXXAPTDIPSDMTMVDTSAVGGCANLKIDNGEDRAGVYSLSGVDGEGGVVFRNGRPSYAAVGDKRTDVVFSTTMNVCAAGYGVVDADWAAHVGHLPLSATVNDVFLMYVAENVGVDTADDAAAAVATAAIASDNDDCEVPVWLLVADGAESLDDAGENTFLSVSGVDDPSEATSWAKFTPATDTTRPTLVENFWIDVGCANAGEVEEASAA-ADTGDGGEEEQVT 1497
            +T D V  RR  SY  RG +S +      GGYQHLEVHPA+  ++ KKNGGSKRAKK        XXXXXXXXXKV  NK GGRRLLQAS D AL PAC+SLFVPTGAGDELTGTY+FQG YS +RPVYAA NGN+FFA KDE  +P TWY+ Q    NSK+FLSLES VFEP DL    ++LQPWVRNNDPTC SCISKL MSCS  TA     A            X S A NENSTMS               APTD+P+D TMVDTSAVGGCANLKI+NGEDRAGVYSLSGVDGEGGVVFRNGRPSYAAVG  RTDVVFSTTMNVCA+GYGVVDADWA  V +LP ++TVN VFLMYVAENVGVDTADDAAA+       SDND CEVPVWLLVADGAESLD AGENTFLSVSGVDDPSEATSWAKFTPAT TTRPTL ENFWID GCA+AGEVEEA AA ADT  GGEEEQ T
Sbjct:    1 MTADTVVGRR-ASY--RGGESGLLEAGSSGGYQHLEVHPASAARKGKKNGGSKRAKKXXXXX-XXXXXXXXXXXKVEANKGGGRRLLQASADGALLPACSSLFVPTGAGDELTGTYDFQGHYSDRRPVYAAANGNKFFA-KDEEGVPTTWYITQASP-NSKFFLSLESAVFEPADLKDPEDMLQPWVRNNDPTCGSCISKLHMSCSAWTADVIAAAPVTTTPAPNDPVXSSPAENENSTMSTAETVVPPATTP---APTDLPTDTTMVDTSAVGGCANLKINNGEDRAGVYSLSGVDGEGGVVFRNGRPSYAAVGADRTDVVFSTTMNVCASGYGVVDADWAVGVEYLPPTSTVNTVFLMYVAENVGVDTADDAAAS-------SDNDGCEVPVWLLVADGAESLDAAGENTFLSVSGVDDPSEATSWAKFTPATSTTRPTLEENFWIDFGCADAGEVEEALAATADTRYGGEEEQGT 462
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14580.3302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JU08_9PHAE2.120e-20074.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0N9_ECTSI8.070e-19770.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14580contigE-fasciculatus_F_contig14580:1787..3283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_001700.1
Exons1
Model size1497
Cds size1497
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927944.5876007-CDS-E-fasciculatus_F_contig14580:1786..32831622927944.5876007-CDS-E-fasciculatus_F_contig14580:1786..3283Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14580 1787..3283 +
1695995760.7613711-CDS-E-fasciculatus_F_contig14580:1786..32831695995760.7613711-CDS-E-fasciculatus_F_contig14580:1786..3283Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14580 1787..3283 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14580.3302.1prot_E-fasciculatus_F_contig14580.3302.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14580 1787..3283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14580.3302.1

>prot_E-fasciculatus_F_contig14580.3302.1 ID=prot_E-fasciculatus_F_contig14580.3302.1|Name=mRNA_E-fasciculatus_F_contig14580.3302.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=499bp
MSNTAAVSLAALSVVLGLTPTPCSGGTSLRGSPMSITPDAVAERRKVSYA
DRGPDSIIGGYQHLEVHPAATRKESKKNGGSKRAKKSKESKKTGERAKKS
RKSKVRVNKAGGRRLLQASTDPALPACASLFVPTGAGDELTGTYEFQGRY
SHQRPVYAAENGNRFFATKDEGAMPITWYVIQPEESNSKYFLSLESDVFE
PNDLELLQPWVRNNDPTCTSCISKLRMSCSDSTAAPTAAPPTTTPAPTDP
VPSHAGNENSTMSTAAETVVPPATTPAPAPTDIPSDMTMVDTSAVGGCAN
LKIDNGEDRAGVYSLSGVDGEGGVVFRNGRPSYAAVGDKRTDVVFSTTMN
VCAAGYGVVDADWAAHVGHLPLSATVNDVFLMYVAENVGVDTADDAAAAV
ATAAIASDNDDCEVPVWLLVADGAESLDDAGENTFLSVSGVDDPSEATSW
AKFTPATDTTRPTLVENFWIDVGCANAGEVEEASAAADTGDGGEEEQVT
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mRNA from alignment at E-fasciculatus_F_contig14580:1787..3283+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14580.3302.1 ID=mRNA_E-fasciculatus_F_contig14580.3302.1|Name=mRNA_E-fasciculatus_F_contig14580.3302.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1497bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14580:1787..3283+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCGAACACAGCAGCAGTATCCTTGGCGGCGCTGTCGGTCGTCCTCGG
CTTGACCCCCACGCCTTGCTCAGGTGGCACCTCCCTGCGCGGATCGCCCA
TGTCCATTACCCCAGACGCCGTGGCGGAAAGGAGAAAGGTTAGCTACGCC
GACCGCGGCCCCGACAGCATCATCGGTGGGTACCAACATCTGGAGGTGCA
CCCAGCGGCGACCAGAAAGGAGAGCAAGAAGAACGGCGGGTCCAAAAGGG
CTAAAAAGAGCAAAGAGAGCAAGAAGACCGGCGAGCGCGCCAAGAAATCC
AGGAAGAGCAAGGTCAGGGTGAACAAGGCAGGCGGCCGCAGGCTGCTACA
AGCGTCCACCGACCCCGCCCTGCCGGCGTGCGCTAGCCTGTTCGTGCCGA
CGGGCGCCGGGGACGAACTGACCGGCACGTACGAGTTCCAGGGCCGCTAC
AGCCACCAGAGGCCGGTCTACGCCGCCGAAAACGGCAACAGGTTCTTCGC
AACAAAAGACGAGGGGGCGATGCCCATCACGTGGTATGTCATCCAGCCGG
AGGAGTCCAATTCCAAGTACTTCCTGTCCCTCGAATCGGACGTTTTCGAG
CCAAACGACCTGGAACTCCTGCAGCCCTGGGTCAGGAACAACGACCCCAC
CTGCACGTCGTGCATCTCGAAGCTCCGCATGTCGTGCTCCGACTCCACCG
CCGCCCCCACCGCCGCGCCGCCGACCACCACCCCGGCGCCCACTGACCCA
GTCCCTTCGCACGCGGGGAACGAGAACTCGACGATGTCCACTGCTGCGGA
GACCGTCGTCCCCCCGGCAACAACGCCGGCACCGGCACCTACCGATATCC
CCTCCGACATGACGATGGTTGACACTTCCGCGGTCGGCGGGTGCGCGAAC
CTCAAGATCGACAACGGCGAGGACCGGGCGGGCGTCTACTCCCTCAGCGG
CGTCGACGGCGAGGGCGGGGTCGTCTTCCGGAACGGCCGGCCGAGCTACG
CCGCCGTCGGCGACAAACGGACGGACGTCGTCTTCTCCACCACGATGAAC
GTCTGCGCGGCCGGGTACGGCGTGGTGGACGCCGACTGGGCCGCCCATGT
GGGGCACCTGCCCCTGAGCGCCACGGTCAACGACGTCTTCCTCATGTACG
TGGCCGAGAACGTCGGCGTGGACACCGCCGACGACGCCGCCGCCGCCGTC
GCCACCGCCGCCATCGCCTCCGACAACGACGACTGCGAGGTGCCCGTCTG
GCTTCTGGTCGCGGACGGCGCGGAGAGTCTCGACGACGCGGGGGAGAACA
CGTTCCTGTCGGTGTCCGGGGTCGACGACCCTTCCGAAGCGACCTCGTGG
GCCAAGTTCACGCCGGCGACGGACACCACGCGCCCGACCCTGGTGGAGAA
CTTCTGGATCGACGTCGGCTGCGCGAATGCCGGCGAGGTGGAGGAGGCCT
CGGCAGCAGCGGACACGGGAGACGGTGGGGAGGAAGAGCAGGTTACT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14580:1787..3283+

>mRNA_E-fasciculatus_F_contig14580.3302.1 ID=mRNA_E-fasciculatus_F_contig14580.3302.1|Name=mRNA_E-fasciculatus_F_contig14580.3302.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2994bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14580:1787..3283+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCGAACACAGCAGCAGTATCCTTGGCGGCGCTGTCGGTCGTCCTCGG
CTTGACCCCCACGCCTTGCTCAGGTGGCACCTCCCTGCGCGGATCGCCCA
TGTCCATTACCCCAGACGCCGTGGCGGAAAGGAGAAAGGTTAGCTACGCC
GACCGCGGCCCCGACAGCATCATCGGTGGGTACCAACATCTGGAGGTGCA
CCCAGCGGCGACCAGAAAGGAGAGCAAGAAGAACGGCGGGTCCAAAAGGG
CTAAAAAGAGCAAAGAGAGCAAGAAGACCGGCGAGCGCGCCAAGAAATCC
AGGAAGAGCAAGGTCAGGGTGAACAAGGCAGGCGGCCGCAGGCTGCTACA
AGCGTCCACCGACCCCGCCCTGCCGGCGTGCGCTAGCCTGTTCGTGCCGA
CGGGCGCCGGGGACGAACTGACCGGCACGTACGAGTTCCAGGGCCGCTAC
AGCCACCAGAGGCCGGTCTACGCCGCCGAAAACGGCAACAGGTTCTTCGC
AACAAAAGACGAGGGGGCGATGCCCATCACGTGGTATGTCATCCAGCCGG
AGGAGTCCAATTCCAAGTACTTCCTGTCCCTCGAATCGGACGTTTTCGAG
CCAAACGACCTGGAACTCCTGCAGCCCTGGGTCAGGAACAACGACCCCAC
CTGCACGTCGTGCATCTCGAAGCTCCGCATGTCGTGCTCCGACTCCACCG
CCGCCCCCACCGCCGCGCCGCCGACCACCACCCCGGCGCCCACTGACCCA
GTCCCTTCGCACGCGGGGAACGAGAACTCGACGATGTCCACTGCTGCGGA
GACCGTCGTCCCCCCGGCAACAACGCCGGCACCGGCACCTACCGATATCC
CCTCCGACATGACGATGGTTGACACTTCCGCGGTCGGCGGGTGCGCGAAC
CTCAAGATCGACAACGGCGAGGACCGGGCGGGCGTCTACTCCCTCAGCGG
CGTCGACGGCGAGGGCGGGGTCGTCTTCCGGAACGGCCGGCCGAGCTACG
CCGCCGTCGGCGACAAACGGACGGACGTCGTCTTCTCCACCACGATGAAC
GTCTGCGCGGCCGGGTACGGCGTGGTGGACGCCGACTGGGCCGCCCATGT
GGGGCACCTGCCCCTGAGCGCCACGGTCAACGACGTCTTCCTCATGTACG
TGGCCGAGAACGTCGGCGTGGACACCGCCGACGACGCCGCCGCCGCCGTC
GCCACCGCCGCCATCGCCTCCGACAACGACGACTGCGAGGTGCCCGTCTG
GCTTCTGGTCGCGGACGGCGCGGAGAGTCTCGACGACGCGGGGGAGAACA
CGTTCCTGTCGGTGTCCGGGGTCGACGACCCTTCCGAAGCGACCTCGTGG
GCCAAGTTCACGCCGGCGACGGACACCACGCGCCCGACCCTGGTGGAGAA
CTTCTGGATCGACGTCGGCTGCGCGAATGCCGGCGAGGTGGAGGAGGCCT
CGGCAGCAGCGGACACGGGAGACGGTGGGGAGGAAGAGCAGGTTACTATG
TCGAACACAGCAGCAGTATCCTTGGCGGCGCTGTCGGTCGTCCTCGGCTT
GACCCCCACGCCTTGCTCAGGTGGCACCTCCCTGCGCGGATCGCCCATGT
CCATTACCCCAGACGCCGTGGCGGAAAGGAGAAAGGTTAGCTACGCCGAC
CGCGGCCCCGACAGCATCATCGGTGGGTACCAACATCTGGAGGTGCACCC
AGCGGCGACCAGAAAGGAGAGCAAGAAGAACGGCGGGTCCAAAAGGGCTA
AAAAGAGCAAAGAGAGCAAGAAGACCGGCGAGCGCGCCAAGAAATCCAGG
AAGAGCAAGGTCAGGGTGAACAAGGCAGGCGGCCGCAGGCTGCTACAAGC
GTCCACCGACCCCGCCCTGCCGGCGTGCGCTAGCCTGTTCGTGCCGACGG
GCGCCGGGGACGAACTGACCGGCACGTACGAGTTCCAGGGCCGCTACAGC
CACCAGAGGCCGGTCTACGCCGCCGAAAACGGCAACAGGTTCTTCGCAAC
AAAAGACGAGGGGGCGATGCCCATCACGTGGTATGTCATCCAGCCGGAGG
AGTCCAATTCCAAGTACTTCCTGTCCCTCGAATCGGACGTTTTCGAGCCA
AACGACCTGGAACTCCTGCAGCCCTGGGTCAGGAACAACGACCCCACCTG
CACGTCGTGCATCTCGAAGCTCCGCATGTCGTGCTCCGACTCCACCGCCG
CCCCCACCGCCGCGCCGCCGACCACCACCCCGGCGCCCACTGACCCAGTC
CCTTCGCACGCGGGGAACGAGAACTCGACGATGTCCACTGCTGCGGAGAC
CGTCGTCCCCCCGGCAACAACGCCGGCACCGGCACCTACCGATATCCCCT
CCGACATGACGATGGTTGACACTTCCGCGGTCGGCGGGTGCGCGAACCTC
AAGATCGACAACGGCGAGGACCGGGCGGGCGTCTACTCCCTCAGCGGCGT
CGACGGCGAGGGCGGGGTCGTCTTCCGGAACGGCCGGCCGAGCTACGCCG
CCGTCGGCGACAAACGGACGGACGTCGTCTTCTCCACCACGATGAACGTC
TGCGCGGCCGGGTACGGCGTGGTGGACGCCGACTGGGCCGCCCATGTGGG
GCACCTGCCCCTGAGCGCCACGGTCAACGACGTCTTCCTCATGTACGTGG
CCGAGAACGTCGGCGTGGACACCGCCGACGACGCCGCCGCCGCCGTCGCC
ACCGCCGCCATCGCCTCCGACAACGACGACTGCGAGGTGCCCGTCTGGCT
TCTGGTCGCGGACGGCGCGGAGAGTCTCGACGACGCGGGGGAGAACACGT
TCCTGTCGGTGTCCGGGGTCGACGACCCTTCCGAAGCGACCTCGTGGGCC
AAGTTCACGCCGGCGACGGACACCACGCGCCCGACCCTGGTGGAGAACTT
CTGGATCGACGTCGGCTGCGCGAATGCCGGCGAGGTGGAGGAGGCCTCGG
CAGCAGCGGACACGGGAGACGGTGGGGAGGAAGAGCAGGTTACT
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