mRNA_E-fasciculatus_F_contig1453.3272.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1453.3272.1
Unique NamemRNA_E-fasciculatus_F_contig1453.3272.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1453.3272.1 vs. uniprot
Match: A0A6H5JA69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA69_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 3.880e-37
Identity = 106/131 (80.92%), Postives = 110/131 (83.97%), Query Frame = 1 
Query:   58 MASKGLLLLGLLLFPCYMYSFRFTPGSTGCTARVRHRVNTGASIAK--GRSASRQAPAVAGLRASPAEEEEERPSGDAGAESAADPTAXXXXXXXXXXXXXXXXEEGVSESGTAGGAESMELRDFRARLMS 444
            MASKGLLLLGLLLFPC+  SFRF PG+TGCTA VRH  N  AS+ K  GR ASRQAPAV GLRAS AE EEERPSGDA AESAA+ TA XXXXXXXXXXXXXX EEGVSESG A GAESMELRDFRARLMS
Sbjct:    1 MASKGLLLLGLLLFPCH--SFRFNPGTTGCTAGVRHGGNP-ASMTKTRGRPASRQAPAVPGLRASAAEGEEERPSGDARAESAAESTASXXXXXXXXXXXXXX-EEGVSESGAAEGAESMELRDFRARLMS 127
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BLAST of mRNA_E-fasciculatus_F_contig1453.3272.1 vs. uniprot
Match: D7FWE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWE6_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 2.150e-20
Identity = 64/84 (76.19%), Postives = 67/84 (79.76%), Query Frame = 1 
Query:  193 KGRSASRQAPAVAGLRASPAEEEEERPSGDAGAESAADPTAXXXXXXXXXXXXXXXXEEGVSESGTAGGAESMELRDFRARLMS 444
            +GR ASRQAPAVAGLRAS AE+EEERPS DA AESAA+ TA XXXXX          EEGVSESG AGGAESMELRDFRARLMS
Sbjct:    4 RGRPASRQAPAVAGLRASAAEDEEERPSRDARAESAAESTASXXXXX----------EEGVSESGAAGGAESMELRDFRARLMS 77
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1453.3272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JA69_9PHAE3.880e-3780.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWE6_ECTSI2.150e-2076.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1453contigE-fasciculatus_F_contig1453:899..2700 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionProtein of unknown function UPF0301
Ec32 orthologEc-09_003970.1
Exons2
Model size446
Cds size444
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927937.8906686-CDS-E-fasciculatus_F_contig1453:900..11491622927937.8906686-CDS-E-fasciculatus_F_contig1453:900..1149Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1453 901..1149 -
1695995758.8537738-CDS-E-fasciculatus_F_contig1453:900..11491695995758.8537738-CDS-E-fasciculatus_F_contig1453:900..1149Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1453 901..1149 -
1622927937.9044356-CDS-E-fasciculatus_F_contig1453:2505..27001622927937.9044356-CDS-E-fasciculatus_F_contig1453:2505..2700Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1453 2506..2700 -
1695995758.8620148-CDS-E-fasciculatus_F_contig1453:2505..27001695995758.8620148-CDS-E-fasciculatus_F_contig1453:2505..2700Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1453 2506..2700 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1453.3272.1prot_E-fasciculatus_F_contig1453.3272.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1453 901..2700 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1453.3272.1

>prot_E-fasciculatus_F_contig1453.3272.1 ID=prot_E-fasciculatus_F_contig1453.3272.1|Name=mRNA_E-fasciculatus_F_contig1453.3272.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=148bp
PRTRHIAEPRSCRDGGRFRMASKGLLLLGLLLFPCYMYSFRFTPGSTGCT
ARVRHRVNTGASIAKGRSASRQAPAVAGLRASPAEEEEERPSGDAGAESA
ADPTASEAAGDGSASGQNGGGEEGVSESGTAGGAESMELRDFRARLMS
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mRNA from alignment at E-fasciculatus_F_contig1453:899..2700-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1453.3272.1 ID=mRNA_E-fasciculatus_F_contig1453.3272.1|Name=mRNA_E-fasciculatus_F_contig1453.3272.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1802bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1453:899..2700- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCAAGAACAAGACACATTGCAGAGCCAAGGAGCTGCAGAGACGGGGGGAG
ATTCAGGATGGCTTCCAAGGGGTTATTGCTGTTGGGGCTGCTGCTGTTTC
CGTGCTACATGTACTCTTTCCGGTTCACCCCCGGGAGCACCGGTTGCACA
GCTAGAGTCAGGCATCGAGTAAACACCGGTGCTTCAATTGCTAAAGTGAG
CTCATGATGATACCTGCCTATGTACAGTAGTCTATCGTTGTTCAGTAAAA
GTGCCAATGCCATTGCCGACAACAGCAGTACGTGAGCTAACACGTGTTGC
TGAGAAGACCGGAAGCCGGAAGCTACCACATATCGTTTTCGGAGGCAACA
AATATGATGTGTGGGCGGGGAGTTTAAAACACGTTGTTTTTCACCCATTT
GAGAATGTGAAAGACGTGTTCATGCAGTGACAGCATCATGCGACGTGCAT
CAGCACGCAACTACACAACACGCCCCCGAACTACGCTACTACGCTACAAT
ACTGGCTGTAGGAGAGTTTCCTCAGCAGGATGTGTACGAAATCCCTGCAC
TGACGAGTGATCCACACTTTGAAAGTTATTTCCTTATATACGAAGTACTC
CGGAGTATACAATTTCAGGAAACGCCATCTACACTACCATCACACTTCCG
TGTACGAAGAAGATTCCACACATTCGCCACGAATTCGCAAACAAACCCTT
CGTGAACATGTTTGGAGAGGGGAGGACCGCAGGCATTTACACATCCGCCG
CCGTGAATTCCATCGCACTTCTGTTCCCCTCAAGCCCATCACTTTTCAGA
GTAACGCGAGTGAATGATGCAGCGAAATCATGCCACGAGATTTGGACGAC
GTTGTCATCCCGCGAGCTGCATGCCCGTATTGCACACCATTAGCCACTCG
GTGGCATGACGAGGGCGCTCTTGGTGACGTGCTTCATGTTGATCGACCCC
CCCCCCCCCCCCCCTTGAATCTACTTTCGAAAACACGCTCTCCTGCATCT
CCTGGGATACACGATGGAAACCAGGCCGCCCAAAGCAGCGGCAGCATGCG
ATGAAATATTGCTGGCGGCAACGAGACAGGGTTGTTTGATCTAATGATCT
AATCGCGTACAGCAGTAGAGTAAATATCGAAATACTGGTGGAATAGGACA
GACAATTTTTCGTTAGATCTGCGACAGCTATCGCCTCTTGCGAATGCTTC
CTTGGCTACAAGAAATTTCTCTATCGGAAAGACTTACGACAATTTTTCTT
GGACGCTCTGCACTGGTAGGCGTTATTGCAGGCTTACGATACGATCGGAA
TATCTCCCCTTCAAAACGTTTTTTTTTACATGTTCGGTCACACTTTCTAT
TGGCTTGTGGACCGTTCGGGCCCATTGTATACCGTTTTCTGGGTAAGTTC
GCCTGTGGCCACGGGAATCAATCAATCGTGTCAAGTGTTAGACTACATAG
TACGGACAGGAGAAGGTACTTGGTAGAGATATCACAACGGTTTTTAATGT
GAAGACAACAACAACAACAACAACAACAACAACACTCCCGACCACGCCCA
GGGCCGGTCAGCTTCAAGACAAGCCCCCGCCGTAGCAGGCTTGCGAGCGT
CACCAGCAGAGGAAGAAGAAGAGCGACCGAGCGGGGACGCCGGCGCGGAA
TCAGCGGCGGATCCAACCGCATCGGAGGCGGCAGGCGACGGCTCGGCGTC
TGGGCAAAATGGAGGGGGCGAAGAAGGTGTTTCGGAGAGCGGGACGGCCG
GGGGCGCGGAGAGCATGGAGCTCCGGGATTTCCGGGCTAGGCTCATGTCC
AA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1453:899..2700-

>mRNA_E-fasciculatus_F_contig1453.3272.1 ID=mRNA_E-fasciculatus_F_contig1453.3272.1|Name=mRNA_E-fasciculatus_F_contig1453.3272.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=888bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1453:899..2700- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCAAGAACAAGACACATTGCAGAGCCAAGGAGCTGCAGAGACGGGGGGAG
ATTCAGGATGGCTTCCAAGGGGTTATTGCTGTTGGGGCTGCTGCTGTTTC
CGTGCTACATGTACTCTTTCCGGTTCACCCCCGGGAGCACCGGTTGCACA
GCTAGAGTCAGGCATCGAGTAAACACCGGTGCTTCAATTGCTAAACCAAG
AACAAGACACATTGCAGAGCCAAGGAGCTGCAGAGACGGGGGGAGATTCA
GGATGGCTTCCAAGGGGTTATTGCTGTTGGGGCTGCTGCTGTTTCCGTGC
TACATGTACTCTTTCCGGTTCACCCCCGGGAGCACCGGTTGCACAGCTAG
AGTCAGGCATCGAGTAAACACCGGTGCTTCAATTGCTAAAGGCCGGTCAG
CTTCAAGACAAGCCCCCGCCGTAGCAGGCTTGCGAGCGTCACCAGCAGAG
GAAGAAGAAGAGCGACCGAGCGGGGACGCCGGCGCGGAATCAGCGGCGGA
TCCAACCGCATCGGAGGCGGCAGGCGACGGCTCGGCGTCTGGGCAAAATG
GAGGGGGCGAAGAAGGTGTTTCGGAGAGCGGGACGGCCGGGGGCGCGGAG
AGCATGGAGCTCCGGGATTTCCGGGCTAGGCTCATGTCCGGCCGGTCAGC
TTCAAGACAAGCCCCCGCCGTAGCAGGCTTGCGAGCGTCACCAGCAGAGG
AAGAAGAAGAGCGACCGAGCGGGGACGCCGGCGCGGAATCAGCGGCGGAT
CCAACCGCATCGGAGGCGGCAGGCGACGGCTCGGCGTCTGGGCAAAATGG
AGGGGGCGAAGAAGGTGTTTCGGAGAGCGGGACGGCCGGGGGCGCGGAGA
GCATGGAGCTCCGGGATTTCCGGGCTAGGCTCATGTCC
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