mRNA_E-fasciculatus_F_contig145.3251.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig145.3251.1
Unique NamemRNA_E-fasciculatus_F_contig145.3251.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig145.3251.1 vs. uniprot
Match: D7FPW5_ECTSI (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPW5_ECTSI)

HSP 1 Score: 222 bits (565), Expect = 3.520e-67
Identity = 105/108 (97.22%), Postives = 107/108 (99.07%), Query Frame = 1
Query:    7 EGGDEELSDELKAALAMSMQAEDAGVEGAAGPGLPANFKGTYELFAVVTHKGREADGGHYMGWVRQEGDDWLVFDDSDVSPCKTEDIMNLKGGGDWHMAYLTFYRFKE 330
            EG DEELSD+LKAALAMSMQAEDAGVEGAAGPGLPA+FKGTYELFAVVTHKGREADGGHYMGWVRQEGDDWLVFDDSDVSPCKTEDIMNLKGGGDWHMAYLTFYRFKE
Sbjct:  531 EGEDEELSDDLKAALAMSMQAEDAGVEGAAGPGLPADFKGTYELFAVVTHKGREADGGHYMGWVRQEGDDWLVFDDSDVSPCKTEDIMNLKGGGDWHMAYLTFYRFKE 638          
BLAST of mRNA_E-fasciculatus_F_contig145.3251.1 vs. uniprot
Match: A0A7S3XWY9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWY9_HETAK)

HSP 1 Score: 155 bits (393), Expect = 1.340e-46
Identity = 77/115 (66.96%), Postives = 87/115 (75.65%), Query Frame = 1
Query:    7 EGGDEELSDELKAALAMSMQAEDA-GVEGAAGPGLPANFKGTYELFAVVTHKGREADGGHYMGWVRQEG------DDWLVFDDSDVSPCKTEDIMNLKGGGDWHMAYLTFYRFKE 330
            EG  EE  + L+AALA+SMQ   A   EGAAGPGLP +F+G YELF VVTHKGREADGGHYMGWV+QEG      D W VFDD+DVS    E++M LKGGGDWHMAYLTFYR+K 
Sbjct:   39 EGAGEEEREALEAALALSMQPGAAVAAEGAAGPGLPGDFRGNYELFGVVTHKGREADGGHYMGWVKQEGGRGDPSDKWFVFDDADVSETTEEEVMKLKGGGDWHMAYLTFYRYKN 153          
BLAST of mRNA_E-fasciculatus_F_contig145.3251.1 vs. uniprot
Match: A0A7S0AW48_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AW48_9STRA)

HSP 1 Score: 148 bits (374), Expect = 1.280e-43
Identity = 76/127 (59.84%), Postives = 86/127 (67.72%), Query Frame = 1
Query:    1 AVEGGDEELSDELKAALAMSMQAEDAGVEGAAGPGLPANFKGTYELFAVVTHKGREADGGHYMGWVRQE-----------------GDDWLVFDDSDVSPCKTEDIMNLKGGGDWHMAYLTFYRFKE 330
            AV G D E  + LKAALAMS++ E   V    GPGLP NF+G YELFAVVTHKGR+ADGGHYM WVR E                  DDW VFDD +VSPCKTED++ LKGGGDWHM+YL FYR K+
Sbjct:   38 AVAGDDAEEDEALKAALAMSVEEELTPV----GPGLPDNFQGQYELFAVVTHKGRDADGGHYMAWVRGEKPEGAPEAEKIGDSEDTNDDWYVFDDDEVSPCKTEDVLKLKGGGDWHMSYLNFYRCKK 160          
BLAST of mRNA_E-fasciculatus_F_contig145.3251.1 vs. uniprot
Match: K0TKS4_THAOC (USP domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TKS4_THAOC)

HSP 1 Score: 146 bits (369), Expect = 1.810e-42
Identity = 73/131 (55.73%), Postives = 89/131 (67.94%), Query Frame = 1
Query:    4 VEGGDEELSDELKAALAMSMQAEDAGVEGAAGPGLPANFKGTYELFAVVTHKGREADGGHYMGWVR----------------------QEGDDWLVFDDSDVSPCKTEDIMNLKGGGDWHMAYLTFYRFKE 330
            ++G D+E   +L+AALAMS++ E   V    GPGLP +F+G YELFAVVTHKGR+ADGGHYMGWV+                      +E DDW VFDD +VSPCKTEDI+ LKGGGDWHM+YL FYR K+
Sbjct:   64 MDGADDEDDADLRAALAMSVEPELPPV----GPGLPPDFRGLYELFAVVTHKGRDADGGHYMGWVKADNSGRQAAGDDKKREKIGDTEEENDDWYVFDDDEVSPCKTEDILKLKGGGDWHMSYLNFYRAKK 190          
BLAST of mRNA_E-fasciculatus_F_contig145.3251.1 vs. uniprot
Match: W7TNR7_9STRA (Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNR7_9STRA)

HSP 1 Score: 154 bits (390), Expect = 2.140e-42
Identity = 76/107 (71.03%), Postives = 83/107 (77.57%), Query Frame = 1
Query:   13 GDEELSDELKAALAMSM-QAEDAGVEGA-AGPGLPANFKGTYELFAVVTHKGREADGGHYMGWVRQEGDDWLVFDDSDVSPCKTEDIMNLKGGGDWHMAYLTFYRFK 327
            G  E    L+AALAMSM  + DA V  A  GPGLP +FKG YELF VVTHKGR ADGGHYMGWVRQ+GDDWLVFDD DVS CKT +++ L GGGDWHMAYL FYRFK
Sbjct:  406 GSSEEEAALQAALAMSMADSADAAVPPAPCGPGLPMDFKGLYELFGVVTHKGRTADGGHYMGWVRQKGDDWLVFDDEDVSECKTAEVLQLSGGGDWHMAYLCFYRFK 512          
BLAST of mRNA_E-fasciculatus_F_contig145.3251.1 vs. uniprot
Match: A0A6V2FVX1_9STRA (Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2FVX1_9STRA)

HSP 1 Score: 154 bits (388), Expect = 7.350e-42
Identity = 74/114 (64.91%), Postives = 85/114 (74.56%), Query Frame = 1
Query:   34 ELKAALAMSMQAEDAGVEGAAGPGLPANFKGTYELFAVVTHKGREADGGHYMGWVRQE---------------GDDWLVFDDSDVSPCKTEDIMNLKGGGDWHMAYLTFYRFKE 330
            E+KAALAMS+Q E+   E A GPGLPANF+G YELFAVVTHKGR+ADGGHYMGWV+ E                DDW VFDD +VSPCKTED++ LKGGGDWHM+YL FYR K+
Sbjct:  463 EMKAALAMSLQTEEETNE-AVGPGLPANFQGQYELFAVVTHKGRDADGGHYMGWVKAEKQNDDAQKIADTDEMNDDWFVFDDDEVSPCKTEDVLKLKGGGDWHMSYLNFYRAKK 575          
BLAST of mRNA_E-fasciculatus_F_contig145.3251.1 vs. uniprot
Match: A0A7S2DH50_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DH50_9STRA)

HSP 1 Score: 147 bits (372), Expect = 7.380e-42
Identity = 71/110 (64.55%), Postives = 86/110 (78.18%), Query Frame = 1
Query:   16 DEELSDELKAALAMSMQAEDAGVEGAA-----GPGLPANFKGTYELFAVVTHKGREADGGHYMGWVRQEGDDWLVFDDSDVSPCKTEDIMNLKGGGDWHMAYLTFYRFKE 330
            +E+  ++LKAALA+S     A  +  +     G GL  +F+G YELFA+VTHKGR ADGGHY+GWVRQEGDDWLVFDD+DVSPCKTED++ LKGGGD+HMAYLTFYR K 
Sbjct:  170 EEDEDEDLKAALALSTAMNTADSQPVSNKDRVGYGLDPDFQGNYELFALVTHKGRLADGGHYIGWVRQEGDDWLVFDDADVSPCKTEDVLPLKGGGDYHMAYLTFYRSKN 279          
BLAST of mRNA_E-fasciculatus_F_contig145.3251.1 vs. uniprot
Match: M4BKS8_HYAAE (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BKS8_HYAAE)

HSP 1 Score: 151 bits (382), Expect = 1.990e-41
Identity = 69/104 (66.35%), Postives = 80/104 (76.92%), Query Frame = 1
Query:   19 EELSDELKAALAMSMQAEDAGVEGAAGPGLPANFKGTYELFAVVTHKGREADGGHYMGWVRQEGDDWLVFDDSDVSPCKTEDIMNLKGGGDWHMAYLTFYRFKE 330
            +E  D L+AA A+SM A+  G+E      LPANF+G YEL+A++THKGR AD GHYM WVR EGDDW  +DD DVSPCKTEDIM LKGGGDWHMAYL FYR K+
Sbjct:  401 QEEKDALEAACALSMGAKSPGIE------LPANFQGNYELYAILTHKGRSADSGHYMAWVRHEGDDWYCYDDDDVSPCKTEDIMKLKGGGDWHMAYLAFYRAKK 498          
BLAST of mRNA_E-fasciculatus_F_contig145.3251.1 vs. uniprot
Match: A0A7S1TQP1_9STRA (Ubiquitin carboxyl-terminal hydrolase n=4 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQP1_9STRA)

HSP 1 Score: 150 bits (379), Expect = 4.970e-41
Identity = 75/108 (69.44%), Postives = 80/108 (74.07%), Query Frame = 1
Query:    7 EGGDEELS---DELKAALAMSMQAEDAGVEGAAGPGLPANFKGTYELFAVVTHKGREADGGHYMGWVRQEGDDWLVFDDSDVSPCKTEDIMNLKGGGDWHMAYLTFYR 321
            E G EE+    DELKAA+AMSM   DAG      PGLP +FKG YELF VVTHKGREAD GHY+GWVRQEGD WLVFDD  V    TE I+NLKGGGDWHMAYL FYR
Sbjct:  382 EAGGEEMEVVDDELKAAMAMSMPPVDAG------PGLPDDFKGNYELFGVVTHKGREADAGHYIGWVRQEGDQWLVFDDDHVEEVNTEAILNLKGGGDWHMAYLAFYR 483          
BLAST of mRNA_E-fasciculatus_F_contig145.3251.1 vs. uniprot
Match: B7G630_PHATC (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G630_PHATC)

HSP 1 Score: 150 bits (379), Expect = 5.510e-41
Identity = 66/106 (62.26%), Postives = 83/106 (78.30%), Query Frame = 1
Query:   22 ELSDELKAALAMSMQAEDAGVEGAAGPGLPANFKGTYELFAVVTHKGREADGGHYMGWVRQEG---DDWLVFDDSDVSPCKTEDIMNLKGGGDWHMAYLTFYRFKE 330
            E  ++L+AALAMS++  D   +   GPGLP NF+G YELFAV+THKGR+ADGGHYM WV+ +    +DW VFDD +VSPCKTED++ LKGGGDWHM+YL FYR K+
Sbjct:  394 EADEDLQAALAMSLETTDGTAKTPIGPGLPENFQGQYELFAVITHKGRDADGGHYMAWVKADNPTNEDWFVFDDDEVSPCKTEDVLKLKGGGDWHMSYLNFYRAKK 499          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig145.3251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPW5_ECTSI3.520e-6797.22Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Ecto... [more]
A0A7S3XWY9_HETAK1.340e-4666.96Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0AW48_9STRA1.280e-4359.84Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
K0TKS4_THAOC1.810e-4255.73USP domain-containing protein n=1 Tax=Thalassiosir... [more]
W7TNR7_9STRA2.140e-4271.03Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Mono... [more]
A0A6V2FVX1_9STRA7.350e-4264.91Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Dity... [more]
A0A7S2DH50_9STRA7.380e-4264.55Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
M4BKS8_HYAAE1.990e-4166.35Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Hyal... [more]
A0A7S1TQP1_9STRA4.970e-4169.44Ubiquitin carboxyl-terminal hydrolase n=4 Tax=Phae... [more]
B7G630_PHATC5.510e-4162.26Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Phae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig145contigE-fasciculatus_F_contig145:72..1061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score223.0
Seed ortholog evalue6.8e-56
Seed eggNOG ortholog2880.D7FPW5
KEGG koko:K11843
EggNOG free text desc.negative regulation of ER-associated ubiquitin-dependent protein catabolic process
EggNOG OGsKOG1872@1,KOG1872@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size333
Cds size333
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927934.407095-CDS-E-fasciculatus_F_contig145:71..2491622927934.407095-CDS-E-fasciculatus_F_contig145:71..249Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig145 72..249 +
1695995757.3198488-CDS-E-fasciculatus_F_contig145:71..2491695995757.3198488-CDS-E-fasciculatus_F_contig145:71..249Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig145 72..249 +
1622927934.4204352-CDS-E-fasciculatus_F_contig145:906..10611622927934.4204352-CDS-E-fasciculatus_F_contig145:906..1061Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig145 907..1061 +
1695995757.3337364-CDS-E-fasciculatus_F_contig145:906..10611695995757.3337364-CDS-E-fasciculatus_F_contig145:906..1061Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig145 907..1061 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig145.3251.1prot_E-fasciculatus_F_contig145.3251.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig145 72..1061 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig145.3251.1

>prot_E-fasciculatus_F_contig145.3251.1 ID=prot_E-fasciculatus_F_contig145.3251.1|Name=mRNA_E-fasciculatus_F_contig145.3251.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=111bp
AVEGGDEELSDELKAALAMSMQAEDAGVEGAAGPGLPANFKGTYELFAVV
THKGREADGGHYMGWVRQEGDDWLVFDDSDVSPCKTEDIMNLKGGGDWHM
AYLTFYRFKE*
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mRNA from alignment at E-fasciculatus_F_contig145:72..1061+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig145.3251.1 ID=mRNA_E-fasciculatus_F_contig145.3251.1|Name=mRNA_E-fasciculatus_F_contig145.3251.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=990bp|location=Sequence derived from alignment at E-fasciculatus_F_contig145:72..1061+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGGTAGAGGGGGGGGACGAGGAGCTAAGCGACGAGCTCAAGGCCGCGTT GGCGATGTCGATGCAGGCGGAGGACGCGGGCGTGGAGGGGGCCGCCGGGC CGGGACTCCCGGCGAACTTCAAGGGTACCTACGAGCTTTTCGCCGTGGTG ACCCACAAGGGCAGGGAGGCGGACGGAGGTGAGGAAGGGCGGCGGGCACT TGTCATGTCGTGTTGTGTTGTGTTGTGTCGTGTGGTAGTGGTAGTGGTGT CTCGAAAGCCGGAGAATGGCAGAGGTGAGTGTGAGACGCCTGCCAGCCGA GAAGGTAGAGCTGACGTCAGTGGCTGGTCGTGGTTTGTGTTCGTCGGCGT TTTCGTGGAAAAGGCCAAACGCCGCACACTCGGAGATTCGGAAGCCGAAA GCTTAGGTACATACTTTGTGTTCGAGAATTAGAGAGACTTGTTGGCTTGA CTAGGTTTGTTTGTTTCGTGTGTGCTCTGAGTTTTTTTGTCTTTCATCAC ACACCCCTGTGACCGGCTGACTGACTCACTGACTCACTCACTCATGTGTT CACTCCTCAAGTTGTACGCTCTTGAGCTGTTACGCTTGTCTGCGCCGCTG TTGTCTTCAGAAGTGTGGCGTACATGTGTTTTGTATTCTTACAGTAGTGT CTAGCGCTGACTGCGCTGACCGCCTGGCCAACGAACATACGTCAATCGGC TACATCGACCGTTGGCCTATGTCTAAGTTGTGCTGATGGCGCTCATCGGC GACTAATAGAATAACACCACCCGTATTTCAAAAGTACAACCGGATGAAAA AAACGCGCGCGCATGGGTGTGTATCTTGGGGGCAGGTCACTACATGGGGT GGGTGCGGCAAGAGGGAGACGACTGGCTGGTTTTCGACGACTCGGACGTT TCCCCCTGCAAGACCGAGGACATCATGAACCTCAAGGGCGGCGGGGACTG GCACATGGCGTACCTCACCTTCTACCGCTTCAAGGAGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig145:72..1061+

>mRNA_E-fasciculatus_F_contig145.3251.1 ID=mRNA_E-fasciculatus_F_contig145.3251.1|Name=mRNA_E-fasciculatus_F_contig145.3251.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=666bp|location=Sequence derived from alignment at E-fasciculatus_F_contig145:72..1061+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGGTAGAGGGGGGGGACGAGGAGCTAAGCGACGAGCTCAAGGCCGCGTT
GGCGATGTCGATGCAGGCGGAGGACGCGGGCGTGGAGGGGGCCGCCGGGC
CGGGACTCCCGGCGAACTTCAAGGGTACCTACGAGCTTTTCGCCGTGGTG
ACCCACAAGGGCAGGGAGGCGGACGGAGGCGGTAGAGGGGGGGGACGAGG
AGCTAAGCGACGAGCTCAAGGCCGCGTTGGCGATGTCGATGCAGGCGGAG
GACGCGGGCGTGGAGGGGGCCGCCGGGCCGGGACTCCCGGCGAACTTCAA
GGGTACCTACGAGCTTTTCGCCGTGGTGACCCACAAGGGCAGGGAGGCGG
ACGGAGGTCACTACATGGGGTGGGTGCGGCAAGAGGGAGACGACTGGCTG
GTTTTCGACGACTCGGACGTTTCCCCCTGCAAGACCGAGGACATCATGAA
CCTCAAGGGCGGCGGGGACTGGCACATGGCGTACCTCACCTTCTACCGCT
TCAAGGAGTAGGTCACTACATGGGGTGGGTGCGGCAAGAGGGAGACGACT
GGCTGGTTTTCGACGACTCGGACGTTTCCCCCTGCAAGACCGAGGACATC
ATGAACCTCAAGGGCGGCGGGGACTGGCACATGGCGTACCTCACCTTCTA
CCGCTTCAAGGAGTAG
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