mRNA_E-fasciculatus_F_contig14491.3248.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14491.3248.1
Unique NamemRNA_E-fasciculatus_F_contig14491.3248.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14491.3248.1 vs. uniprot
Match: D8LJE5_ECTSI (Putative ubiquitously-expressed transcript variant 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJE5_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 1.230e-35
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 1 
Query:    1 VQDPSKVFVKVALGFHVEFTLPEAISFADVKRSSLASAATKLRDSEAEVARDIASAESMIRDLRALGEAVS 213
            VQDPSKVFVKVALGFHVEFTLPEAISFADVKRSSLASAA KLRDSEAEVARDIASAESMIRDLRALGEAVS
Sbjct:   79 VQDPSKVFVKVALGFHVEFTLPEAISFADVKRSSLASAAAKLRDSEAEVARDIASAESMIRDLRALGEAVS 149
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14491.3248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJE5_ECTSI1.230e-3598.59Putative ubiquitously-expressed transcript variant... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14491contigE-fasciculatus_F_contig14491:2449..2664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPrefoldin alpha-like
Ec32 orthologEc-06_010110.1
Exons1
Model size216
Cds size216
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927934.1924057-CDS-E-fasciculatus_F_contig14491:2448..26641622927934.1924057-CDS-E-fasciculatus_F_contig14491:2448..2664Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14491 2449..2664 -
1695995757.254944-CDS-E-fasciculatus_F_contig14491:2448..26641695995757.254944-CDS-E-fasciculatus_F_contig14491:2448..2664Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14491 2449..2664 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14491.3248.1prot_E-fasciculatus_F_contig14491.3248.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14491 2449..2664 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14491.3248.1

>prot_E-fasciculatus_F_contig14491.3248.1 ID=prot_E-fasciculatus_F_contig14491.3248.1|Name=mRNA_E-fasciculatus_F_contig14491.3248.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=72bp
VQDPSKVFVKVALGFHVEFTLPEAISFADVKRSSLASAATKLRDSEAEVA
RDIASAESMIRDLRALGEAVS*
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mRNA from alignment at E-fasciculatus_F_contig14491:2449..2664-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14491.3248.1 ID=mRNA_E-fasciculatus_F_contig14491.3248.1|Name=mRNA_E-fasciculatus_F_contig14491.3248.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=216bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14491:2449..2664- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGCAAGACCCGTCCAAAGTTTTCGTGAAGGTGGCTCTTGGATTCCACGT
GGAGTTCACACTCCCAGAGGCGATTTCGTTCGCCGATGTGAAACGGTCAA
GCCTGGCGAGTGCCGCGACGAAGCTCAGAGACAGTGAAGCAGAAGTAGCC
CGGGATATCGCATCGGCGGAGTCCATGATCCGAGATTTGAGGGCTCTGGG
TGAAGCAGTTTCATGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14491:2449..2664-

>mRNA_E-fasciculatus_F_contig14491.3248.1 ID=mRNA_E-fasciculatus_F_contig14491.3248.1|Name=mRNA_E-fasciculatus_F_contig14491.3248.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=432bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14491:2449..2664- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGCAAGACCCGTCCAAAGTTTTCGTGAAGGTGGCTCTTGGATTCCACGT
GGAGTTCACACTCCCAGAGGCGATTTCGTTCGCCGATGTGAAACGGTCAA
GCCTGGCGAGTGCCGCGACGAAGCTCAGAGACAGTGAAGCAGAAGTAGCC
CGGGATATCGCATCGGCGGAGTCCATGATCCGAGATTTGAGGGCTCTGGG
TGAAGCAGTTTCATGAGTGCAAGACCCGTCCAAAGTTTTCGTGAAGGTGG
CTCTTGGATTCCACGTGGAGTTCACACTCCCAGAGGCGATTTCGTTCGCC
GATGTGAAACGGTCAAGCCTGGCGAGTGCCGCGACGAAGCTCAGAGACAG
TGAAGCAGAAGTAGCCCGGGATATCGCATCGGCGGAGTCCATGATCCGAG
ATTTGAGGGCTCTGGGTGAAGCAGTTTCATGA
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