mRNA_E-fasciculatus_F_contig14481.3242.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14481.3242.1
Unique NamemRNA_E-fasciculatus_F_contig14481.3242.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14481.3242.1 vs. uniprot
Match: D8LQU8_ECTSI (Tryptophan synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQU8_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 2.790e-27
Identity = 58/64 (90.62%), Postives = 60/64 (93.75%), Query Frame = 1 
Query:    1 LTGVTGARAHLPTGLDKFIRRVRRATSKPLSVGFGISSTEQVQAVASIADGVVVGSAFMNVIDE 192
            +TGVTGARAHLP GL+KFIRRVRRAT KPLSVGFGISSTEQVQAVA IADGVVVGSAFMN IDE
Sbjct:  210 VTGVTGARAHLPIGLEKFIRRVRRATGKPLSVGFGISSTEQVQAVAGIADGVVVGSAFMNAIDE 273
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BLAST of mRNA_E-fasciculatus_F_contig14481.3242.1 vs. uniprot
Match: A0A6H5K496_9PHAE (Tryptophan synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K496_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 2.830e-24
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 1 
Query:    1 LTGVTGARAHLPTGLDKFIRRVRRATSKPLSVGFGISSTEQVQAVASIADGVVVGSAFMNVIDE 192
            +TGVTGARAHLPTG++KFIRRVRR T +PL VGFGIS TEQVQAVA IADGVVVG AFMN IDE
Sbjct:  220 VTGVTGARAHLPTGVEKFIRRVRRVTGQPLFVGFGISLTEQVQAVARIADGVVVGWAFMNAIDE 283
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BLAST of mRNA_E-fasciculatus_F_contig14481.3242.1 vs. uniprot
Match: D8LLB1_ECTSI (Tryptophan synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLB1_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 2.730e-19
Identity = 47/64 (73.44%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    1 LTGVTGARAHLPTGLDKFIRRVRRATSKPLSVGFGISSTEQVQAVASIADGVVVGSAFMNVIDE 192
            + GVTGAR+ LP  L  F+ RVR AT KPLSVGFGISS EQVQ VA IADGVVVGSAFMN +DE
Sbjct:  238 VAGVTGARSGLPADLKDFVGRVRAATDKPLSVGFGISSKEQVQEVAGIADGVVVGSAFMNAVDE 301
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BLAST of mRNA_E-fasciculatus_F_contig14481.3242.1 vs. uniprot
Match: A0A7C5AP45_9CHLR (Tryptophan synthase alpha chain n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C5AP45_9CHLR)

HSP 1 Score: 77.8 bits (190), Expect = 9.340e-16
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    1 LTGVTGARAHLPTGLDKFIRRVRRATSKPLSVGFGISSTEQVQAVASIADGVVVGSAFM 177
            +TGVTGAR HLP  L  F++RVRR T +PL VGFGIS  EQVQ VA +ADGV+VGSA +
Sbjct:  176 VTGVTGAREHLPPDLAAFVQRVRRQTDQPLCVGFGISLPEQVQEVARVADGVIVGSAIL 234
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BLAST of mRNA_E-fasciculatus_F_contig14481.3242.1 vs. uniprot
Match: A0A7C3FF62_9CHLR (Tryptophan synthase alpha chain n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A7C3FF62_9CHLR)

HSP 1 Score: 77.4 bits (189), Expect = 1.160e-15
Identity = 38/64 (59.38%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:    1 LTGVTGARAHLPTGLDKFIRRVRRATSKPLSVGFGISSTEQVQAVASIADGVVVGSAFMNVIDE 192
            LTGVTGAR +LP  L+ F+RRVR+  S+PL VGFG+SS EQ + +A IADGV+VGS  + +I+E
Sbjct:  174 LTGVTGARQNLPAELEDFVRRVRQKASQPLCVGFGVSSPEQARRIARIADGVIVGSHLIRLIEE 237
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BLAST of mRNA_E-fasciculatus_F_contig14481.3242.1 vs. uniprot
Match: A0A497ADP5_9CHLR (Tryptophan synthase alpha chain n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A497ADP5_9CHLR)

HSP 1 Score: 77.4 bits (189), Expect = 1.160e-15
Identity = 37/64 (57.81%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:    1 LTGVTGARAHLPTGLDKFIRRVRRATSKPLSVGFGISSTEQVQAVASIADGVVVGSAFMNVIDE 192
            LTGVTGARA LP  L+ F+ RVR  T KPL VGFG+S+ EQ + +A++ADGV+VGS  + ++DE
Sbjct:  175 LTGVTGARAKLPQELEGFVARVRERTEKPLCVGFGVSTPEQARRIANVADGVIVGSRIIQLLDE 238
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BLAST of mRNA_E-fasciculatus_F_contig14481.3242.1 vs. uniprot
Match: A0A3D1Z0M7_9ACTN (Tryptophan synthase alpha chain n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A3D1Z0M7_9ACTN)

HSP 1 Score: 77.4 bits (189), Expect = 1.210e-15
Identity = 39/62 (62.90%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:    1 LTGVTGARAHLPTGLDKFIRRVRRATSKPLSVGFGISSTEQVQAVASIADGVVVGSAFMNVI 186
            LTGVTGARA+LP+ L  FI RVR+ T KPL+VGFGIS  EQ + V+ IADGV++GSA + +I
Sbjct:  175 LTGVTGARANLPSNLTDFIYRVRKLTDKPLAVGFGISEPEQAKDVSGIADGVIIGSALVGLI 236
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BLAST of mRNA_E-fasciculatus_F_contig14481.3242.1 vs. uniprot
Match: UPI001BBEA744 (Tryptophan synthase subunit alpha n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=UPI001BBEA744)

HSP 1 Score: 77.4 bits (189), Expect = 1.340e-15
Identity = 38/62 (61.29%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:    1 LTGVTGARAHLPTGLDKFIRRVRRATSKPLSVGFGISSTEQVQAVASIADGVVVGSAFMNVI 186
            LTGVTGARA+LP+ L  FI RVR  T KPL+VGFGIS  EQ + V++IADGV++GSA + ++
Sbjct:  183 LTGVTGARANLPSNLTDFIHRVRALTDKPLAVGFGISEPEQAKEVSAIADGVIIGSALVGLV 244
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BLAST of mRNA_E-fasciculatus_F_contig14481.3242.1 vs. uniprot
Match: A0A3N5LXW9_9CHLR (Tryptophan synthase alpha chain n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3N5LXW9_9CHLR)

HSP 1 Score: 77.0 bits (188), Expect = 1.640e-15
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    1 LTGVTGARAHLPTGLDKFIRRVRRATSKPLSVGFGISSTEQVQAVASIADGVVVGSAFM 177
            LTGVTGAR  LP GL +F+ RVR+AT KPL+VGFGI S EQ  AV  +ADGV+VGSA +
Sbjct:  177 LTGVTGARRTLPAGLAEFVGRVRKATGKPLAVGFGIGSGEQAAAVGRLADGVIVGSALV 235
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BLAST of mRNA_E-fasciculatus_F_contig14481.3242.1 vs. uniprot
Match: A0A7C2WNA8_9CHLR (Tryptophan synthase alpha chain n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A7C2WNA8_9CHLR)

HSP 1 Score: 76.6 bits (187), Expect = 2.300e-15
Identity = 39/62 (62.90%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:    1 LTGVTGARAHLPTGLDKFIRRVRRATSKPLSVGFGISSTEQVQAVASIADGVVVGSAFMNVI 186
            L GVTGAR  LP GL  F+RRVR+ T+KPL VGFGIS+ EQ Q V  IADGV+VGS  + +I
Sbjct:  175 LLGVTGARESLPVGLGDFVRRVRKETTKPLCVGFGISTPEQAQQVGQIADGVIVGSRLVQLI 236
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14481.3242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQU8_ECTSI2.790e-2790.63Tryptophan synthase n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5K496_9PHAE2.830e-2482.81Tryptophan synthase n=1 Tax=Ectocarpus sp. CCAP 13... [more]
D8LLB1_ECTSI2.730e-1973.44Tryptophan synthase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A7C5AP45_9CHLR9.340e-1666.10Tryptophan synthase alpha chain n=1 Tax=Anaeroline... [more]
A0A7C3FF62_9CHLR1.160e-1559.38Tryptophan synthase alpha chain n=1 Tax=Dehalococc... [more]
A0A497ADP5_9CHLR1.160e-1557.81Tryptophan synthase alpha chain n=1 Tax=Chloroflex... [more]
A0A3D1Z0M7_9ACTN1.210e-1562.90Tryptophan synthase alpha chain n=2 Tax=Actinobact... [more]
UPI001BBEA7441.340e-1561.29Tryptophan synthase subunit alpha n=1 Tax=Actinomy... [more]
A0A3N5LXW9_9CHLR1.640e-1566.10Tryptophan synthase alpha chain n=1 Tax=Chloroflex... [more]
A0A7C2WNA8_9CHLR2.300e-1562.90Tryptophan synthase alpha chain n=1 Tax=Dehalococc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14481contigE-fasciculatus_F_contig14481:277..468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.2
Seed ortholog evalue4.4e-23
Seed eggNOG ortholog2880.D8LQU8
Preferred nameTRP5
KEGG rclassRC00209,RC00210,RC00700,RC00701,RC02868
KEGG koko:K01694,ko:K01695,ko:K01696,ko:K10882,ko:K13222
KEGG ReactionR00674,R02340,R02722
KEGG Pathwayko00260,ko00400,ko00402,ko01100,ko01110,ko01130,ko01230,ko03440,ko03460,map00260,map00400,map00402,map01100,map01110,map01130,map01230,map03440,map03460
KEGG ModuleM00023
GOsGO:0000162,GO:0003674,GO:0003824,GO:0004834,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005886,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006970,GO:0006979,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009606,GO:0009607,GO:0009617,GO:0009628,GO:0009629,GO:0009630,GO:0009651,GO:0009683,GO:0009684,GO:0009719,GO:0009725,GO:0009735,GO:0009850,GO:0009851,GO:0009941,GO:0009987,GO:0010033,GO:0010817,GO:0016020,GO:0016043,GO:0016053,GO:0016829,GO:0016830,GO:0016832,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0019904,GO:0031967,GO:0031975,GO:0032787,GO:0033036,GO:0033037,GO:0033554,GO:0033984,GO:0034641,GO:0034754,GO:0042221,GO:0042401,GO:0042430,GO:0042435,GO:0042445,GO:0042446,GO:0042545,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045229,GO:0046219,GO:0046394,GO:0046483,GO:0050896,GO:0051179,GO:0051641,GO:0051704,GO:0051707,GO:0051716,GO:0052386,GO:0052482,GO:0052542,GO:0052543,GO:0052544,GO:0052545,GO:0065007,GO:0065008,GO:0070727,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071944,GO:0072330,GO:0098542,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.tryptophan synthase activity
EggNOG OGsCOG0133@1,COG0159@1,KOG1395@2759,KOG4175@2759
EC4.1.2.8,4.2.1.20
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size193
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927933.4462295-CDS-E-fasciculatus_F_contig14481:276..4681622927933.4462295-CDS-E-fasciculatus_F_contig14481:276..468Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14481 277..468 -
1695995756.9313486-CDS-E-fasciculatus_F_contig14481:276..4681695995756.9313486-CDS-E-fasciculatus_F_contig14481:276..468Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14481 277..468 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14481.3242.1prot_E-fasciculatus_F_contig14481.3242.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14481 277..468 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14481.3242.1

>prot_E-fasciculatus_F_contig14481.3242.1 ID=prot_E-fasciculatus_F_contig14481.3242.1|Name=mRNA_E-fasciculatus_F_contig14481.3242.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=64bp
LTGVTGARAHLPTGLDKFIRRVRRATSKPLSVGFGISSTEQVQAVASIAD
GVVVGSAFMNVIDE
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mRNA from alignment at E-fasciculatus_F_contig14481:277..468-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14481.3242.1 ID=mRNA_E-fasciculatus_F_contig14481.3242.1|Name=mRNA_E-fasciculatus_F_contig14481.3242.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=192bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14481:277..468- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGACCGGGGTAACGGGTGCTCGCGCCCACCTCCCCACCGGCCTGGATAA
GTTCATCCGTCGCGTGCGCCGGGCGACAAGCAAGCCTCTTTCCGTCGGAT
TCGGCATCAGCTCGACCGAGCAGGTGCAAGCGGTAGCCAGCATCGCCGAT
GGGGTTGTGGTTGGGTCGGCCTTCATGAACGTCATCGATGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14481:277..468-

>mRNA_E-fasciculatus_F_contig14481.3242.1 ID=mRNA_E-fasciculatus_F_contig14481.3242.1|Name=mRNA_E-fasciculatus_F_contig14481.3242.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=384bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14481:277..468- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGACCGGGGTAACGGGTGCTCGCGCCCACCTCCCCACCGGCCTGGATAA
GTTCATCCGTCGCGTGCGCCGGGCGACAAGCAAGCCTCTTTCCGTCGGAT
TCGGCATCAGCTCGACCGAGCAGGTGCAAGCGGTAGCCAGCATCGCCGAT
GGGGTTGTGGTTGGGTCGGCCTTCATGAACGTCATCGATGAGTTGACCGG
GGTAACGGGTGCTCGCGCCCACCTCCCCACCGGCCTGGATAAGTTCATCC
GTCGCGTGCGCCGGGCGACAAGCAAGCCTCTTTCCGTCGGATTCGGCATC
AGCTCGACCGAGCAGGTGCAAGCGGTAGCCAGCATCGCCGATGGGGTTGT
GGTTGGGTCGGCCTTCATGAACGTCATCGATGAG
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