prot_E-fasciculatus_F_contig14481.3242.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig14481.3242.1
Unique Nameprot_E-fasciculatus_F_contig14481.3242.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length64
Homology
BLAST of mRNA_E-fasciculatus_F_contig14481.3242.1 vs. uniprot
Match: D8LQU8_ECTSI (Tryptophan synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQU8_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 2.790e-27
Identity = 58/64 (90.62%), Postives = 60/64 (93.75%), Query Frame = 0
Query:    1 LTGVTGARAHLPTGLDKFIRRVRRATSKPLSVGFGISSTEQVQAVASIADGVVVGSAFMNVIDE 64
            +TGVTGARAHLP GL+KFIRRVRRAT KPLSVGFGISSTEQVQAVA IADGVVVGSAFMN IDE
Sbjct:  210 VTGVTGARAHLPIGLEKFIRRVRRATGKPLSVGFGISSTEQVQAVAGIADGVVVGSAFMNAIDE 273          
BLAST of mRNA_E-fasciculatus_F_contig14481.3242.1 vs. uniprot
Match: A0A6H5K496_9PHAE (Tryptophan synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K496_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 2.830e-24
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 0
Query:    1 LTGVTGARAHLPTGLDKFIRRVRRATSKPLSVGFGISSTEQVQAVASIADGVVVGSAFMNVIDE 64
            +TGVTGARAHLPTG++KFIRRVRR T +PL VGFGIS TEQVQAVA IADGVVVG AFMN IDE
Sbjct:  220 VTGVTGARAHLPTGVEKFIRRVRRVTGQPLFVGFGISLTEQVQAVARIADGVVVGWAFMNAIDE 283          
BLAST of mRNA_E-fasciculatus_F_contig14481.3242.1 vs. uniprot
Match: D8LLB1_ECTSI (Tryptophan synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLB1_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 2.730e-19
Identity = 47/64 (73.44%), Postives = 51/64 (79.69%), Query Frame = 0
Query:    1 LTGVTGARAHLPTGLDKFIRRVRRATSKPLSVGFGISSTEQVQAVASIADGVVVGSAFMNVIDE 64
            + GVTGAR+ LP  L  F+ RVR AT KPLSVGFGISS EQVQ VA IADGVVVGSAFMN +DE
Sbjct:  238 VAGVTGARSGLPADLKDFVGRVRAATDKPLSVGFGISSKEQVQEVAGIADGVVVGSAFMNAVDE 301          
BLAST of mRNA_E-fasciculatus_F_contig14481.3242.1 vs. uniprot
Match: A0A7C5AP45_9CHLR (Tryptophan synthase alpha chain n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C5AP45_9CHLR)

HSP 1 Score: 77.8 bits (190), Expect = 9.340e-16
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 0
Query:    1 LTGVTGARAHLPTGLDKFIRRVRRATSKPLSVGFGISSTEQVQAVASIADGVVVGSAFM 59
            +TGVTGAR HLP  L  F++RVRR T +PL VGFGIS  EQVQ VA +ADGV+VGSA +
Sbjct:  176 VTGVTGAREHLPPDLAAFVQRVRRQTDQPLCVGFGISLPEQVQEVARVADGVIVGSAIL 234          
BLAST of mRNA_E-fasciculatus_F_contig14481.3242.1 vs. uniprot
Match: A0A7C3FF62_9CHLR (Tryptophan synthase alpha chain n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A7C3FF62_9CHLR)

HSP 1 Score: 77.4 bits (189), Expect = 1.160e-15
Identity = 38/64 (59.38%), Postives = 50/64 (78.12%), Query Frame = 0
Query:    1 LTGVTGARAHLPTGLDKFIRRVRRATSKPLSVGFGISSTEQVQAVASIADGVVVGSAFMNVIDE 64
            LTGVTGAR +LP  L+ F+RRVR+  S+PL VGFG+SS EQ + +A IADGV+VGS  + +I+E
Sbjct:  174 LTGVTGARQNLPAELEDFVRRVRQKASQPLCVGFGVSSPEQARRIARIADGVIVGSHLIRLIEE 237          
BLAST of mRNA_E-fasciculatus_F_contig14481.3242.1 vs. uniprot
Match: A0A497ADP5_9CHLR (Tryptophan synthase alpha chain n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A497ADP5_9CHLR)

HSP 1 Score: 77.4 bits (189), Expect = 1.160e-15
Identity = 37/64 (57.81%), Postives = 49/64 (76.56%), Query Frame = 0
Query:    1 LTGVTGARAHLPTGLDKFIRRVRRATSKPLSVGFGISSTEQVQAVASIADGVVVGSAFMNVIDE 64
            LTGVTGARA LP  L+ F+ RVR  T KPL VGFG+S+ EQ + +A++ADGV+VGS  + ++DE
Sbjct:  175 LTGVTGARAKLPQELEGFVARVRERTEKPLCVGFGVSTPEQARRIANVADGVIVGSRIIQLLDE 238          
BLAST of mRNA_E-fasciculatus_F_contig14481.3242.1 vs. uniprot
Match: A0A3D1Z0M7_9ACTN (Tryptophan synthase alpha chain n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A3D1Z0M7_9ACTN)

HSP 1 Score: 77.4 bits (189), Expect = 1.210e-15
Identity = 39/62 (62.90%), Postives = 49/62 (79.03%), Query Frame = 0
Query:    1 LTGVTGARAHLPTGLDKFIRRVRRATSKPLSVGFGISSTEQVQAVASIADGVVVGSAFMNVI 62
            LTGVTGARA+LP+ L  FI RVR+ T KPL+VGFGIS  EQ + V+ IADGV++GSA + +I
Sbjct:  175 LTGVTGARANLPSNLTDFIYRVRKLTDKPLAVGFGISEPEQAKDVSGIADGVIIGSALVGLI 236          
BLAST of mRNA_E-fasciculatus_F_contig14481.3242.1 vs. uniprot
Match: UPI001BBEA744 (Tryptophan synthase subunit alpha n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=UPI001BBEA744)

HSP 1 Score: 77.4 bits (189), Expect = 1.340e-15
Identity = 38/62 (61.29%), Postives = 49/62 (79.03%), Query Frame = 0
Query:    1 LTGVTGARAHLPTGLDKFIRRVRRATSKPLSVGFGISSTEQVQAVASIADGVVVGSAFMNVI 62
            LTGVTGARA+LP+ L  FI RVR  T KPL+VGFGIS  EQ + V++IADGV++GSA + ++
Sbjct:  183 LTGVTGARANLPSNLTDFIHRVRALTDKPLAVGFGISEPEQAKEVSAIADGVIIGSALVGLV 244          
BLAST of mRNA_E-fasciculatus_F_contig14481.3242.1 vs. uniprot
Match: A0A3N5LXW9_9CHLR (Tryptophan synthase alpha chain n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3N5LXW9_9CHLR)

HSP 1 Score: 77.0 bits (188), Expect = 1.640e-15
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 0
Query:    1 LTGVTGARAHLPTGLDKFIRRVRRATSKPLSVGFGISSTEQVQAVASIADGVVVGSAFM 59
            LTGVTGAR  LP GL +F+ RVR+AT KPL+VGFGI S EQ  AV  +ADGV+VGSA +
Sbjct:  177 LTGVTGARRTLPAGLAEFVGRVRKATGKPLAVGFGIGSGEQAAAVGRLADGVIVGSALV 235          
BLAST of mRNA_E-fasciculatus_F_contig14481.3242.1 vs. uniprot
Match: A0A7C2WNA8_9CHLR (Tryptophan synthase alpha chain n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A7C2WNA8_9CHLR)

HSP 1 Score: 76.6 bits (187), Expect = 2.300e-15
Identity = 39/62 (62.90%), Postives = 46/62 (74.19%), Query Frame = 0
Query:    1 LTGVTGARAHLPTGLDKFIRRVRRATSKPLSVGFGISSTEQVQAVASIADGVVVGSAFMNVI 62
            L GVTGAR  LP GL  F+RRVR+ T+KPL VGFGIS+ EQ Q V  IADGV+VGS  + +I
Sbjct:  175 LLGVTGARESLPVGLGDFVRRVRKETTKPLCVGFGISTPEQAQQVGQIADGVIVGSRLVQLI 236          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14481.3242.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQU8_ECTSI2.790e-2790.63Tryptophan synthase n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5K496_9PHAE2.830e-2482.81Tryptophan synthase n=1 Tax=Ectocarpus sp. CCAP 13... [more]
D8LLB1_ECTSI2.730e-1973.44Tryptophan synthase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A7C5AP45_9CHLR9.340e-1666.10Tryptophan synthase alpha chain n=1 Tax=Anaeroline... [more]
A0A7C3FF62_9CHLR1.160e-1559.38Tryptophan synthase alpha chain n=1 Tax=Dehalococc... [more]
A0A497ADP5_9CHLR1.160e-1557.81Tryptophan synthase alpha chain n=1 Tax=Chloroflex... [more]
A0A3D1Z0M7_9ACTN1.210e-1562.90Tryptophan synthase alpha chain n=2 Tax=Actinobact... [more]
UPI001BBEA7441.340e-1561.29Tryptophan synthase subunit alpha n=1 Tax=Actinomy... [more]
A0A3N5LXW9_9CHLR1.640e-1566.10Tryptophan synthase alpha chain n=1 Tax=Chloroflex... [more]
A0A7C2WNA8_9CHLR2.300e-1562.90Tryptophan synthase alpha chain n=1 Tax=Dehalococc... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002028Tryptophan synthase, alpha chainPFAMPF00290Trp_syntAcoord: 2..63
e-value: 3.3E-19
score: 68.8
IPR013785Aldolase-type TIM barrelGENE3D3.20.20.70coord: 1..64
e-value: 8.6E-22
score: 79.1
NoneNo IPR availablePANTHERPTHR43406FAMILY NOT NAMEDcoord: 2..63
NoneNo IPR availablePANTHERPTHR43406:SF1TRYPTOPHAN SYNTHASE ALPHA CHAINcoord: 2..63
IPR011060Ribulose-phosphate binding barrelSUPERFAMILY51366Ribulose-phoshate binding barrelcoord: 2..63

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14481contigE-fasciculatus_F_contig14481:277..468 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14481.3242.1mRNA_E-fasciculatus_F_contig14481.3242.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig14481 277..468 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig14481.3242.1 ID=prot_E-fasciculatus_F_contig14481.3242.1|Name=mRNA_E-fasciculatus_F_contig14481.3242.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=64bp
LTGVTGARAHLPTGLDKFIRRVRRATSKPLSVGFGISSTEQVQAVASIAD
GVVVGSAFMNVIDE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011060RibuloseP-bd_barrel
IPR013785Aldolase_TIM
IPR002028Trp_synthase_suA