mRNA_E-fasciculatus_F_contig14449.3231.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14449.3231.1
Unique NamemRNA_E-fasciculatus_F_contig14449.3231.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14449.3231.1 vs. uniprot
Match: D8LPT3_ECTSI (EsV-1-7 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPT3_ECTSI)

HSP 1 Score: 292 bits (747), Expect = 2.050e-93
Identity = 248/373 (66.49%), Postives = 261/373 (69.97%), Query Frame = 1 
Query:   10 RCESELGCVRQPTFGWEGEKARFCSAHKMENMLDVKNPRC--------------------------------------GEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXLASRRSTAGTGGAKAGSGSPAKRPRNGPRSFAHDSAXXXXXXXXXXPALPAGAMPAFSLGAGXXXXXXXXXXXRAPLPKRGHPXXXXXXTPARAGGHRRATSESWIDFCPKRVFETTSGKDAADLGA-DNNDPVPRHAAAVAARRARHHQPAPRTVNTTMATIAXXXXXXXXXXXXXXXXGSLSTMAGKGDDYRFGGKDGGGGVGRGIATTXXFFHPESVAGXXXXXXXAWVPGXXXXXXXXXXXXXXXXXX--ATGRGGVSSA 1005
            RC+   GC + P +   G+KA +C+ HKM+N +DVK+PRC                                      GEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXLASRRSTAG   AK  S SPAKR RNGPRSFAHDSA XXXXXXXX PALPAGAMPAFSLGA XXXXXXXXXXXRAPLPKRGHPXXXXXXTPARAGGHRRATSESWIDFCPKRVFETT+GKDAADLGA DNNDPVPRHAAAVA R   HHQP+PRTVNT MATIA                GS  +M GKGDDYRF GKDGGG  GRGI  T  FFHPES AG       AW  G        XXXXXXXXXX  ATGRGGV+SA
Sbjct:   17 RCQMP-GCSKPPRYALPGQKAEYCTLHKMDNYVDVKHPRCESELGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXLASRRSTAGA--AKPCS-SPAKRARNGPRSFAHDSAAXXXXXXXXPPALPAGAMPAFSLGAXXXXXXXXXXXXRAPLPKRGHPXXXXXXTPARAGGHRRATSESWIDFCPKRVFETTTGKDAADLGASDNNDPVPRHAAAVARRARHHHQPSPRTVNTNMATIAAAAAVGVDLPGTTANGGSSLSMEGKGDDYRFSGKDGGGSGGRGIVMTTSFFHPESGAGRTGGGGRAWAHGNAAVGWLSXXXXXXXXXXXXATGRGGVTSA 385
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BLAST of mRNA_E-fasciculatus_F_contig14449.3231.1 vs. uniprot
Match: A0A6H5KQR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQR5_9PHAE)

HSP 1 Score: 263 bits (673), Expect = 2.570e-77
Identity = 216/309 (69.90%), Postives = 220/309 (71.20%), Query Frame = 1 
Query:    1 QHPRCESELGCVRQPTFGWEGEKARFCSAHKMENMLDVKNPRCGEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXLASRRSTAGTGGAKAGSGSPAKRPRNGPRSFAHDSAXXXXXXXXXXPALPAGAMPAFSLGAGXXXXXXXXXXXRAPLPKRGHPXXXXXXTPARAGGHRRATSESWIDFCPKRVFETTSGKDAADLG-ADNNDPVPRHAAAVAARRARHHQPAPRTVNTTMATIAXXXXXXXXXXXXXXXXGSL-STMAGKGDDYRFGGKDGGGGVGRGIATTXXFFHPESVAGXXXXXXXAWVPG 921
            +HPRCESELG                                 GEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXLASRRSTAG GG      SPAKR RNGPRSFAHDSAXXXXXXXXX P LPAGAMPAFSLGA  XXXXXXXXXXRAPLPKRGHPXXXXXXTPARAGGHRRATSESWIDFCPKRVFETT+GKDAADLG +DNNDPVPRHAAAVA R   HHQPAPRTVN  MAT+A              XX    S MAGKGDDYRFGG       GRGIATT  FFHP SVAG       AW PG
Sbjct:  426 KHPRCESELGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXLASRRSTAGGGGGAKPCSSPAKRARNGPRSFAHDSAXXXXXXXXXPPGLPAGAMPAFSLGAAGXXXXXXXXXXRAPLPKRGHPXXXXXXTPARAGGHRRATSESWIDFCPKRVFETTTGKDAADLGTSDNNDPVPRHAAAVARRARHHHQPAPRTVNPNMATVAAAAAVGVDLPATTAXXXXXXSMMAGKGDDYRFGGG------GRGIATTTSFFHPGSVAGRTGGGGRAWAPG 728
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BLAST of mRNA_E-fasciculatus_F_contig14449.3231.1 vs. uniprot
Match: A0A835ZKV3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKV3_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.070e-6
Identity = 22/42 (52.38%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:   13 CESELGCVRQPTFGWEGEKARFCSAHKMENMLDVKNPRCGEP 138
            C +  GC +QP+FG+ GE+ R+C+ HK+  M+DVKN RC EP
Sbjct:    9 CNAPEGCDKQPSFGFIGERPRYCATHKLGGMIDVKNKRCEEP 50
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BLAST of mRNA_E-fasciculatus_F_contig14449.3231.1 vs. uniprot
Match: D7G0X0_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0X0_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 9.440e-5
Identity = 23/39 (58.97%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:   10 RCESELGCVRQPTFGWEGEKARFCSAHKMENMLDVKNPR 126
            RCE    C RQPT+G +G++AR+CS+HK E M+DVKN R
Sbjct:    9 RCEF-FECTRQPTYGQDGQRARYCSSHKEEGMIDVKNCR 46
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14449.3231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LPT3_ECTSI2.050e-9366.49EsV-1-7 (Partial) (Fragment) n=1 Tax=Ectocarpus si... [more]
A0A6H5KQR5_9PHAE2.570e-7769.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZKV3_9STRA2.070e-652.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G0X0_ECTSI9.440e-558.97EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14449contigE-fasciculatus_F_contig14449:34..1712 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1008
Cds size1008
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14449.3231.1prot_E-fasciculatus_F_contig14449.3231.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14449 34..1712 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927932.0782175-CDS-E-fasciculatus_F_contig14449:33..5251622927932.0782175-CDS-E-fasciculatus_F_contig14449:33..525Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14449 34..525 -
1695995756.2758207-CDS-E-fasciculatus_F_contig14449:33..5251695995756.2758207-CDS-E-fasciculatus_F_contig14449:33..525Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14449 34..525 -
1622927932.0982597-CDS-E-fasciculatus_F_contig14449:974..13731622927932.0982597-CDS-E-fasciculatus_F_contig14449:974..1373Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14449 975..1373 -
1695995756.2859917-CDS-E-fasciculatus_F_contig14449:974..13731695995756.2859917-CDS-E-fasciculatus_F_contig14449:974..1373Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14449 975..1373 -
1622927932.1260931-CDS-E-fasciculatus_F_contig14449:1595..17121622927932.1260931-CDS-E-fasciculatus_F_contig14449:1595..1712Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14449 1596..1712 -
1695995756.2958446-CDS-E-fasciculatus_F_contig14449:1595..17121695995756.2958446-CDS-E-fasciculatus_F_contig14449:1595..1712Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14449 1596..1712 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14449.3231.1

>prot_E-fasciculatus_F_contig14449.3231.1 ID=prot_E-fasciculatus_F_contig14449.3231.1|Name=mRNA_E-fasciculatus_F_contig14449.3231.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=336bp
QHPRCESELGCVRQPTFGWEGEKARFCSAHKMENMLDVKNPRCGEPGCLK
RPRYGEEGGRARFCAAHRFDDMVDLASRRSTAGTGGAKAGSGSPAKRPRN
GPRSFAHDSAAAAAAAAAKPPALPAGAMPAFSLGAGGGAGGGGGGGGRAP
LPKRGHPVPKRGHTPARAGGHRRATSESWIDFCPKRVFETTSGKDAADLG
ADNNDPVPRHAAAVAARRARHHQPAPRTVNTTMATIAAATAVGVDPPPPT
TNSGSLSTMAGKGDDYRFGGKDGGGGVGRGIATTTSFFHPESVAGRTGGG
GRAWVPGNAAAGWLSSGGGGGGGSAATGRGGVSSAS
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mRNA from alignment at E-fasciculatus_F_contig14449:34..1712-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14449.3231.1 ID=mRNA_E-fasciculatus_F_contig14449.3231.1|Name=mRNA_E-fasciculatus_F_contig14449.3231.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1679bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14449:34..1712- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGCACCCTCGATGCGAGTCCGAGCTCGGATGTGTTCGCCAGCCGACTTT
CGGGTGGGAGGGGGAGAAGGCCCGCTTCTGCAGCGCGCACAAAATGGAGA
ACATGCTTGACGTTAAGGTCAGTGTTGTTGCCTCTTGTGTGGTGTGTGGT
TTGTCAGGTTGTTGCGTGTGTGTTTACCACGTATTGACCGAGTGCGGAGA
GATTCATCCAAGCTGCTGGTGACTTGAGGCTTTTGTCGTGCTGCTGCTTT
TGTTGTTCATGATGATTTGGTCCACCCCGGAGATGCGCGTTCAAATTACC
CCGCCCTCGCCTTATCTCTCGCGGACACAATAACAACAGAACCCGCGTTG
CGGAGAGCCCGGCTGCCTGAAGCGTCCGAGGTACGGCGAGGAGGGTGGCC
GCGCTCGCTTCTGCGCCGCGCACAGGTTCGACGACATGGTCGATCTCGCT
TCTCGACGGTCGACGGCCGGCACCGGCGGCGCCAAGGCGGGCAGCGGCAG
CCCCGCCAAGCGCCCCCGCAACGGGCCCCGATCTTTCGCCCACGACTCCG
CGGCGGCGGCTGCCGCCGCTGCTGCCAAGCCTCCGGCCTTGCCCGCGGGA
GCCATGCCCGCGTTCAGCCTCGGTGCCGGTGGTGGCGCTGGTGGTGGTGG
TGGTGGTGGAGGGAGGGCACCCTTGCCGAAGAGGGGGCACCCTGTCCCCA
AGCGGGGGCACACGCCGGCGCGCGCTGGCGGTCACAGGGTGAGTTTTGTT
TTGGCCACGTTGTTGTGTCTACTGTAAACCTACCCCCCCCTCCCCCGCCC
CCTCCGTGTTGTTTCTGGGGAGTTGGTTCACCCTCGCCGCCGAAACGCTC
GATCTGTGTTGATGTGCAATTGTAGGGTGCGTGTGGTTTGGCAAGCGGGC
GGTTGGCAAAGGCTACATCGCTTCCGTTCCACACGCACGGCCTTGGCCCG
TAAAAGGGCGTGCTTTCGCCTTTGCTGCCTTGTTTCTGTCCCCCTCTGAT
CCGTCACGCTATTCATCTTTCACACCACCCGTTCGTCCCATCTCCCTGGT
TAACGAACGCGGCAGCTGTTACCCCTTGCCCTCCTCGTCCTCCCTTGTCT
CCGTCGCCCTCTGATCTCTCACACTCTTTCGTTCACACCGTCGTTTCCTC
CTCATTTCTTTTTCAAATTTACTCCGAAAAACGGCAGCGCGCGACCTCGG
AGAGCTGGATCGACTTCTGCCCCAAGCGCGTGTTCGAGACCACGAGCGGC
AAGGATGCCGCGGACCTGGGCGCCGACAACAACGACCCCGTCCCCCGCCA
CGCCGCCGCTGTCGCCGCCAGGAGGGCCCGGCATCACCAGCCCGCCCCCC
GGACCGTCAACACCACCATGGCAACCATCGCAGCGGCGACAGCGGTAGGA
GTGGACCCTCCTCCTCCTACGACCAACAGCGGCAGCCTGTCGACGATGGC
GGGGAAGGGAGACGACTATCGCTTCGGCGGCAAGGACGGCGGCGGCGGCG
TTGGCAGGGGCATCGCGACGACCACCTCCTTCTTCCACCCCGAGAGCGTC
GCCGGTAGAACAGGCGGCGGTGGTCGCGCCTGGGTCCCCGGAAACGCGGC
GGCGGGCTGGCTCTCTAGCGGCGGGGGCGGCGGCGGCGGCTCGGCCGCCA
CTGGCCGGGGAGGCGTTTCCTCCGCCTCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14449:34..1712-

>mRNA_E-fasciculatus_F_contig14449.3231.1 ID=mRNA_E-fasciculatus_F_contig14449.3231.1|Name=mRNA_E-fasciculatus_F_contig14449.3231.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2016bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14449:34..1712- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGCACCCTCGATGCGAGTCCGAGCTCGGATGTGTTCGCCAGCCGACTTT
CGGGTGGGAGGGGGAGAAGGCCCGCTTCTGCAGCGCGCACAAAATGGAGA
ACATGCTTGACGTTAAGCAGCACCCTCGATGCGAGTCCGAGCTCGGATGT
GTTCGCCAGCCGACTTTCGGGTGGGAGGGGGAGAAGGCCCGCTTCTGCAG
CGCGCACAAAATGGAGAACATGCTTGACGTTAAGAACCCGCGTTGCGGAG
AGCCCGGCTGCCTGAAGCGTCCGAGGTACGGCGAGGAGGGTGGCCGCGCT
CGCTTCTGCGCCGCGCACAGGTTCGACGACATGGTCGATCTCGCTTCTCG
ACGGTCGACGGCCGGCACCGGCGGCGCCAAGGCGGGCAGCGGCAGCCCCG
CCAAGCGCCCCCGCAACGGGCCCCGATCTTTCGCCCACGACTCCGCGGCG
GCGGCTGCCGCCGCTGCTGCCAAGCCTCCGGCCTTGCCCGCGGGAGCCAT
GCCCGCGTTCAGCCTCGGTGCCGGTGGTGGCGCTGGTGGTGGTGGTGGTG
GTGGAGGGAGGGCACCCTTGCCGAAGAGGGGGCACCCTGTCCCCAAGCGG
GGGCACACGCCGGCGCGCGCTGGCGGTCACAGGAACCCGCGTTGCGGAGA
GCCCGGCTGCCTGAAGCGTCCGAGGTACGGCGAGGAGGGTGGCCGCGCTC
GCTTCTGCGCCGCGCACAGGTTCGACGACATGGTCGATCTCGCTTCTCGA
CGGTCGACGGCCGGCACCGGCGGCGCCAAGGCGGGCAGCGGCAGCCCCGC
CAAGCGCCCCCGCAACGGGCCCCGATCTTTCGCCCACGACTCCGCGGCGG
CGGCTGCCGCCGCTGCTGCCAAGCCTCCGGCCTTGCCCGCGGGAGCCATG
CCCGCGTTCAGCCTCGGTGCCGGTGGTGGCGCTGGTGGTGGTGGTGGTGG
TGGAGGGAGGGCACCCTTGCCGAAGAGGGGGCACCCTGTCCCCAAGCGGG
GGCACACGCCGGCGCGCGCTGGCGGTCACAGGCGCGCGACCTCGGAGAGC
TGGATCGACTTCTGCCCCAAGCGCGTGTTCGAGACCACGAGCGGCAAGGA
TGCCGCGGACCTGGGCGCCGACAACAACGACCCCGTCCCCCGCCACGCCG
CCGCTGTCGCCGCCAGGAGGGCCCGGCATCACCAGCCCGCCCCCCGGACC
GTCAACACCACCATGGCAACCATCGCAGCGGCGACAGCGGTAGGAGTGGA
CCCTCCTCCTCCTACGACCAACAGCGGCAGCCTGTCGACGATGGCGGGGA
AGGGAGACGACTATCGCTTCGGCGGCAAGGACGGCGGCGGCGGCGTTGGC
AGGGGCATCGCGACGACCACCTCCTTCTTCCACCCCGAGAGCGTCGCCGG
TAGAACAGGCGGCGGTGGTCGCGCCTGGGTCCCCGGAAACGCGGCGGCGG
GCTGGCTCTCTAGCGGCGGGGGCGGCGGCGGCGGCTCGGCCGCCACTGGC
CGGGGAGGCGTTTCCTCCGCCTCCCGCGCGACCTCGGAGAGCTGGATCGA
CTTCTGCCCCAAGCGCGTGTTCGAGACCACGAGCGGCAAGGATGCCGCGG
ACCTGGGCGCCGACAACAACGACCCCGTCCCCCGCCACGCCGCCGCTGTC
GCCGCCAGGAGGGCCCGGCATCACCAGCCCGCCCCCCGGACCGTCAACAC
CACCATGGCAACCATCGCAGCGGCGACAGCGGTAGGAGTGGACCCTCCTC
CTCCTACGACCAACAGCGGCAGCCTGTCGACGATGGCGGGGAAGGGAGAC
GACTATCGCTTCGGCGGCAAGGACGGCGGCGGCGGCGTTGGCAGGGGCAT
CGCGACGACCACCTCCTTCTTCCACCCCGAGAGCGTCGCCGGTAGAACAG
GCGGCGGTGGTCGCGCCTGGGTCCCCGGAAACGCGGCGGCGGGCTGGCTC
TCTAGCGGCGGGGGCGGCGGCGGCGGCTCGGCCGCCACTGGCCGGGGAGG
CGTTTCCTCCGCCTCC
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