mRNA_E-fasciculatus_F_contig14413.3210.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14413.3210.1 vs. uniprot
Match: D7G787_ECTSI (Exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G787_ECTSI) HSP 1 Score: 389 bits (998), Expect = 1.320e-123 Identity = 275/329 (83.59%), Postives = 280/329 (85.11%), Query Frame = 1
Query: 1 EEGHLVLHVRAPVLGGKSSPTDTDTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPATVDVRDMMDTEGGGAADGNASPGGGADADGGPVGETRGEDDDEEEWLMFNDFLVEKTVLDDARGFGPEWKEPCVLVYRRVPSPEEEGENARRAAAMAVTKKRLAITPSVFDIAPLSKNRPVSQVVRLPPDRLPGKGDIVAIDAEFVSLTVEESRLRGDGSKVVTKQGRQSLARVSALDGRHSGSGSGSEANAIVMMDDYVVQSEPVVDHLTRFSGITPG 987
EEGHLVLHVRAPVLGGK S TD +TA XXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VDVRDM DTEGGGAADGNASPGGG DAD G V RGE+++EEEWLMFNDFLVEKTVLDDARGFGPEWKEPCVLVYRRVPS EEEGENARRAAAMA+TKKRLAITPSVFDIAPLSKNRPVSQVVRLPPDRLPGKGDIVAIDAEFVSLTVEESRLRGDGSKVVTKQGRQSLARVSALDGRHSG SE NAIVMMDDYVVQSEPVVDHLTRFSGITPG
Sbjct: 607 EEGHLVLHVRAPVLGGKPSSTD-NTATPTKPXXXXXXXXXXXXXXXXXXXXXXAKGRREGGAAVASPGATGGKNGGSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDVRDMTDTEGGGAADGNASPGGGRDADRGTV---RGEEEEEEEWLMFNDFLVEKTVLDDARGFGPEWKEPCVLVYRRVPSAEEEGENARRAAAMALTKKRLAITPSVFDIAPLSKNRPVSQVVRLPPDRLPGKGDIVAIDAEFVSLTVEESRLRGDGSKVVTKQGRQSLARVSALDGRHSG----SEVNAIVMMDDYVVQSEPVVDHLTRFSGITPG 927
BLAST of mRNA_E-fasciculatus_F_contig14413.3210.1 vs. uniprot
Match: A0A6H5KX54_9PHAE (Exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX54_9PHAE) HSP 1 Score: 322 bits (826), Expect = 1.600e-96 Identity = 164/174 (94.25%), Postives = 167/174 (95.98%), Query Frame = 1
Query: 466 WLMFNDFLVEKTVLDDARGFGPEWKEPCVLVYRRVPSPEEEGENARRAAAMAVTKKRLAITPSVFDIAPLSKNRPVSQVVRLPPDRLPGKGDIVAIDAEFVSLTVEESRLRGDGSKVVTKQGRQSLARVSALDGRHSGSGSGSEANAIVMMDDYVVQSEPVVDHLTRFSGITPG 987
WLMFNDFLVEKTVLDDARGFGPEWKEPCVLVYRRVPS EEE ENARRAAAMA+ +KRLAITPSVFDIAPLSKNRPVSQVVRLPPDRLPGKGDIVAIDAEFVSLTVEESRLRGDGSKVVTKQGRQSLARVSALDGR+SG SEANAIVMMDDYVVQSEPVVDHLTRFSGITPG
Sbjct: 1321 WLMFNDFLVEKTVLDDARGFGPEWKEPCVLVYRRVPSAEEEAENARRAAAMALARKRLAITPSVFDIAPLSKNRPVSQVVRLPPDRLPGKGDIVAIDAEFVSLTVEESRLRGDGSKVVTKQGRQSLARVSALDGRYSG----SEANAIVMMDDYVVQSEPVVDHLTRFSGITPG 1490
BLAST of mRNA_E-fasciculatus_F_contig14413.3210.1 vs. uniprot
Match: A0A836CIT6_9STRA (Exonuclease-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIT6_9STRA) HSP 1 Score: 168 bits (426), Expect = 1.590e-45 Identity = 90/198 (45.45%), Postives = 122/198 (61.62%), Query Frame = 1
Query: 385 NASPGGGADADGGPVGETRGEDDDEEEWLMFNDFLVEKTVLDDARGFGPEWKEPCVLVYRRVPSPEEEGENARRAAAMAVTKKRLAITPSVFDIAPLSKNRPVSQVVRLPPDRLPGKGDIVAIDAEFVSLTVEESRLRGDGSKVVTKQGRQSLARVSALDGRHSGSGSGSEANAIVMMDDYVVQSEPVVDHLTRFSGI 978
+ + GGG DA+ + G+ WL+FND L ++T LDD RGFGP WK PC+L+YR +E E A LA+ P+VF I ++N P + +PP++LPG+G +VA+DAEFV L +EE RLR DGS+VVTK RQ LARVS +D A V++DDY++Q+EPV+DHLTRFSG+
Sbjct: 61 STAAGGGDDAESSSQADAAGDGG----WLIFNDMLSQRTFLDDVRGFGPAWKNPCILLYR------DESEGRLPAKLCEQPPPALAMPPAVFSIPSFAQNSPGGRKPAIPPEKLPGEGAVVALDAEFVCLEMEEVRLRSDGSRVVTKPARQGLARVSVVD-----------AEGQVIIDDYIIQTEPVLDHLTRFSGV 237
BLAST of mRNA_E-fasciculatus_F_contig14413.3210.1 vs. uniprot
Match: K8ZCB7_NANGC (PAB-dependent poly(A)-specific ribonuclease subunit 2 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8ZCB7_NANGC) HSP 1 Score: 135 bits (340), Expect = 2.490e-33 Identity = 95/243 (39.09%), Postives = 121/243 (49.79%), Query Frame = 1
Query: 349 MMDTEGGGAADGNASPGGGADADGGPVGETRGEDDDEEEWLMFNDFLVEKTVLDDARGFGPEWKEPCVLVYRRVPSP---------------------------EEEGEN-----ARRAAAMAVTKKRLAITPSVFDIAPLSKNRPVSQVVR-LPPDRLPGKGDIVAIDAEFVSLTVEESRLRGDGSKVVTKQGRQSLARVSALDGRHSGSGSGSEANAIVMMDDYVVQSEPVVDHLTRFSGI 978
M EGGG DG S D E +W + NDFLVE T+L+DA GF P WKEPC+L+YR S EE+GEN A A +AV +I S+F S P+ L P+ LPG+GD+V IDAEFV L +E + + G++VV K+GRQ+LAR+S LD R VM+DDYV+ SEPV+D+LTRFSGI
Sbjct: 1 MEGVEGGGGEDGRGS-------------------DPEWQWYIVNDFLVEPTILEDALGFLPAWKEPCILLYRDRTSTAAAHAAWLEQLRAAGARVAGGGKREVGEEKGENDSSADASGAGGLAVGTLPPSIPVSIFASPSRSTATPLPPTFXXLTPEALPGRGDLVGIDAEFVQLEMETASVLETGARVVFKEGRQALARLSLLDVRSDQ----------VMVDDYVLPSEPVMDYLTRFSGI 214
BLAST of mRNA_E-fasciculatus_F_contig14413.3210.1 vs. uniprot
Match: A0A4D9D4P1_9STRA (Exonuclease domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D4P1_9STRA) HSP 1 Score: 138 bits (347), Expect = 1.660e-32 Identity = 93/223 (41.70%), Postives = 119/223 (53.36%), Query Frame = 1
Query: 427 VGETRGED----DDEEEWLMFNDFLVEKTVLDDARGFGPEWKEPCVLVYRRVPSP---------------------------EEEGEN-----ARRAAAMAVTKKRLAITPSVFDIAPLSKNRPVSQVVR-LPPDRLPGKGDIVAIDAEFVSLTVEESRLRGDGSKVVTKQGRQSLARVSALDGRHSGSGSGSEANAIVMMDDYVVQSEPVVDHLTRFSGITP 984
V E GED D E +W + NDFLVE T+L+DA GF P WKEPC+L+YR S EE+ EN A A +AV +I S+F LS P+ L P+ LPG+GD+V IDAEFV L +E + + G++VV K+GRQ+LAR+S LD R VM+DDYV+ SEPV+D+LTRFSGI P
Sbjct: 602 VEEGGGEDGRGTDPEWQWYIVNDFLVEATILEDALGFLPTWKEPCILLYRDRTSTAAAHAAWLEQLRAVGARVAGGGKREVDEEKAENDSSTDASGAGGLAVGSLPPSIPVSIFASPSLSTATPLPPTFTPLTPEALPGRGDLVGIDAEFVQLEMETASVLETGARVVFKEGRQALARLSLLDVRSDQ----------VMVDDYVLPSEPVMDYLTRFSGIVP 814
BLAST of mRNA_E-fasciculatus_F_contig14413.3210.1 vs. uniprot
Match: A0A7S1B6P0_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B6P0_9STRA) HSP 1 Score: 136 bits (343), Expect = 6.500e-32 Identity = 78/186 (41.94%), Postives = 107/186 (57.53%), Query Frame = 1
Query: 457 EEEWLMFNDFLVEKTVLDDARGFGPEWKEPCVLVYRRVPSPEEEGENARRAAAMAVTK----------KRLAITPSVFDIAPLSKNRPVSQVVRLPPDRLPGKGDIVAIDAEFVSLTVEESRLRGDGSKVVTKQGRQSLARVSALDGRHSGSGSGSEANAIVMMDDYVVQSEPVVDHLTRFSGITP 984
E+EW++FN F V +T++DDAR F +K+PC+++YR E +N + + + K+ I PSV D + S ++ P+ LPGKGD+VAID EFVS+ E+S L G+KV+ +GR LARVS +D RH GS V+ DDYV EPVVD+LTR SGITP
Sbjct: 1394 EDEWVLFNGFNVSRTIVDDARAFHIPFKDPCIVLYRSCGEEEGVDKNLQTGSKKEWSPSNMPQKTYFAKKRNIPPSVMDSPSIVAGFQPSSCRKISPEDLPGKGDLVAIDTEFVSVQHEQSTLTTKGTKVMVTEGRSVLARVSVIDCRHIEDGS----KGGVLFDDYVYPMEPVVDYLTRHSGITP 1575
BLAST of mRNA_E-fasciculatus_F_contig14413.3210.1 vs. uniprot
Match: A0A397BVH1_9STRA (Exonuclease domain-containing protein (Fragment) n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BVH1_9STRA) HSP 1 Score: 132 bits (332), Expect = 1.160e-31 Identity = 77/172 (44.77%), Postives = 106/172 (61.63%), Query Frame = 1
Query: 466 WLMFNDFLVEKTVLDDARGFGPEWKEPCVLVYRRVPSPEEEGENARRAAAMAVTKKRLAITPSVFDIAPLSKNRPVSQVVRLPPDRLPGKGDIVAIDAEFVSLTVEESRLRGDGSKVVTKQGRQSLARVSALDGRHSGSGSGSEANAIVMMDDYVVQSEPVVDHLTRFSGIT 981
W++ NDF V + +DDA F P WK P VL++RR SP A+A TK + I +VFD APL N V+ V++ LP +GD VAID EFV + +EE+ L+ DG++VV K+ RQSLARVS + G +V++DDY++ +EPVVD+LTRFSG+T
Sbjct: 146 WMLLNDFAVSTSTVDDAVNFSPPWKYPSVLLFRRASSPN----------AVADTKV-VPIPSTVFDAAPL--NPSVASVIKAV--TLPKRGDRVAIDTEFVIVEMEEATLQTDGTRVVIKESRQSLARVSVIHGETD----------VVIVDDYILPNEPVVDYLTRFSGLT 292
BLAST of mRNA_E-fasciculatus_F_contig14413.3210.1 vs. uniprot
Match: A0A6G0XRY2_9STRA (Exonuclease domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XRY2_9STRA) HSP 1 Score: 134 bits (336), Expect = 4.850e-31 Identity = 78/176 (44.32%), Postives = 105/176 (59.66%), Query Frame = 1
Query: 460 EEWLMFNDFLVEKTVLDDARGFGPEWKEPCVLVYRRVPSPEEEGENARRAAAMAVTKKRLAITPSVFDIAPLSKNRPVSQVVRLPPDRLPGKGDIVAIDAEFVSLTVEESRLRGDGSKVVTKQGRQSLARVSALDGRHSGSGSGSEANAIVMMDDYVVQSEPVVDHLTRFSGITPG 987
EEWL+ NDF V + DDA F P+WK PCVL++ R S E + + + I S+F APL+ P + V +P RLP +GD VAID EFV + +EE+ L+ DG+++VTK+ RQSLARVS L G V++DDYV+ +EPVVD+LTRFSG+ G
Sbjct: 760 EEWLLCNDFSVTTSTEDDALDFSPQWKFPCVLLFSRGSSDYE-----------STVETSIQIPDSIFQAAPLN---PGAAAVEMP--RLPQRGDRVAIDTEFVIVEMEEAVLQTDGTRIVTKESRQSLARVSLLHGETDN----------VIVDDYVLPNEPVVDYLTRFSGLVAG 909
BLAST of mRNA_E-fasciculatus_F_contig14413.3210.1 vs. uniprot
Match: A0A024UA66_9STRA (Exonuclease domain-containing protein n=4 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UA66_9STRA) HSP 1 Score: 131 bits (330), Expect = 3.010e-30 Identity = 76/172 (44.19%), Postives = 103/172 (59.88%), Query Frame = 1
Query: 466 WLMFNDFLVEKTVLDDARGFGPEWKEPCVLVYRRVPSPEEEGENARRAAAMAVTKKRLAITPSVFDIAPLSKNRPVSQVVRLPPDRLPGKGDIVAIDAEFVSLTVEESRLRGDGSKVVTKQGRQSLARVSALDGRHSGSGSGSEANAIVMMDDYVVQSEPVVDHLTRFSGIT 981
W++ NDF V ++ +DDA F P WK P VL+YRR SP + T I ++FD APL+ P R+ LP KGD VAID EFV + +EE+ L+ DG++VV K+ RQSLARVS + G E +A V++DDY++ +EPVVD+LTRFSG+T
Sbjct: 777 WMLLNDFTVSESSVDDAINFSPPWKYPSVLLYRREGSP----------VVLDTTAPPAPIPSTIFDAAPLN---PTVARPRMSTVTLPKKGDRVAIDTEFVIVEMEEATLQTDGTRVVIKESRQSLARVSVIHG---------ETDA-VLVDDYILPNEPVVDYLTRFSGLT 925
BLAST of mRNA_E-fasciculatus_F_contig14413.3210.1 vs. uniprot
Match: W4G622_9STRA (Exonuclease domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G622_9STRA) HSP 1 Score: 130 bits (328), Expect = 5.510e-30 Identity = 78/172 (45.35%), Postives = 108/172 (62.79%), Query Frame = 1
Query: 466 WLMFNDFLVEKTVLDDARGFGPEWKEPCVLVYRRVPSPEEEGENARRAAAMAVTKKRLAITPSVFDIAPLSKNRPVSQVVRLPPDRLPGKGDIVAIDAEFVSLTVEESRLRGDGSKVVTKQGRQSLARVSALDGRHSGSGSGSEANAIVMMDDYVVQSEPVVDHLTRFSGIT 981
W++ NDF V + +DDA F P WK P VL++RR S A+A TK + I SVFD APL N V+ V++ +LP +GD VAID EFV + +EE+ L+ DG++VV K+ RQSLARVS + G E +A+++ DDY++ +EPVVD+LTRFSG+T
Sbjct: 769 WMLLNDFAVSTSTVDDAVNFSPPWKYPSVLLFRRASSSSLN--------AVADTKV-VPIPSSVFDAAPL--NPSVASVIKAV--KLPKRGDRVAIDTEFVIVEMEEATLQTDGTRVVIKESRQSLARVSVIHG---------ETDAVIV-DDYILPNEPVVDYLTRFSGLT 917 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14413.3210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14413.3210.1 >prot_E-fasciculatus_F_contig14413.3210.1 ID=prot_E-fasciculatus_F_contig14413.3210.1|Name=mRNA_E-fasciculatus_F_contig14413.3210.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=329bp EEGHLVLHVRAPVLGGKSSPTDTDTATPTKPPPPPAVKKDARKDGGGGGGback to top mRNA from alignment at E-fasciculatus_F_contig14413:993..3311- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14413.3210.1 ID=mRNA_E-fasciculatus_F_contig14413.3210.1|Name=mRNA_E-fasciculatus_F_contig14413.3210.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2319bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14413:993..3311- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14413:993..3311- >mRNA_E-fasciculatus_F_contig14413.3210.1 ID=mRNA_E-fasciculatus_F_contig14413.3210.1|Name=mRNA_E-fasciculatus_F_contig14413.3210.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1974bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14413:993..3311- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |